Wall clock time and date at job start Tue Mar 31 2020 00:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 C 1.53007 * 109.47256 * 240.00134 * 2 1 3 5 5 O 1.42895 * 109.47177 * 119.99887 * 2 1 3 6 6 C 1.35748 * 117.00308 * 62.98283 * 5 2 1 7 7 C 1.39488 * 120.79947 * 355.50229 * 6 5 2 8 8 C 1.37803 * 119.25676 * 180.02562 * 7 6 5 9 9 N 1.32057 * 120.91642 * 0.02562 * 8 7 6 10 10 C 1.32495 * 121.75524 * 359.65444 * 9 8 7 11 11 N 1.39013 * 119.67465 * 180.33634 * 10 9 8 12 12 C 1.46504 * 120.00128 * 180.29301 * 11 10 9 13 13 C 1.52994 * 109.47675 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47296 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00335 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00165 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00067 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99556 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47640 * 90.00110 * 19 17 15 21 21 H 1.48500 * 109.46993 * 210.00058 * 19 17 15 22 22 H 1.48504 * 109.47292 * 329.99612 * 19 17 15 23 23 C 1.38896 * 120.64511 * 0.63697 * 10 9 8 24 24 H 1.09002 * 109.47470 * 316.71923 * 1 2 3 25 25 H 1.09006 * 109.46945 * 76.71563 * 1 2 3 26 26 H 1.09000 * 109.47169 * 196.71640 * 1 2 3 27 27 H 1.09003 * 109.47575 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47177 * 299.99799 * 3 2 1 29 29 H 1.08997 * 109.47542 * 60.00045 * 3 2 1 30 30 H 1.08993 * 109.46535 * 290.38958 * 4 2 1 31 31 H 1.08995 * 109.47239 * 50.39139 * 4 2 1 32 32 H 1.09001 * 109.47057 * 170.39248 * 4 2 1 33 33 H 1.07999 * 120.37227 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.54184 * 179.97438 * 8 7 6 35 35 H 0.97002 * 120.00622 * 0.29037 * 11 10 9 36 36 H 1.08998 * 109.46933 * 300.00365 * 12 11 10 37 37 H 1.09003 * 109.46833 * 60.00037 * 12 11 10 38 38 H 1.08998 * 109.47224 * 300.00169 * 13 12 11 39 39 H 1.09007 * 109.46833 * 59.99605 * 13 12 11 40 40 H 1.09002 * 109.47253 * 299.99541 * 14 13 12 41 41 H 1.08991 * 109.47199 * 60.00443 * 14 13 12 42 42 H 0.97001 * 119.99159 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.48558 * 179.68201 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0062 -0.6736 1.1667 6 6 1.6937 -1.9888 1.2899 7 6 0.8633 -2.6157 0.3608 8 6 0.5663 -3.9522 0.5168 9 7 1.0560 -4.6422 1.5307 10 6 1.8532 -4.0870 2.4317 11 7 2.3498 -4.8558 3.4780 12 6 3.2267 -4.2477 4.4819 13 6 3.6291 -5.3029 5.5141 14 6 4.5453 -4.6679 6.5620 15 6 4.9422 -5.7074 7.5783 16 1 4.5770 -6.7198 7.4863 17 6 5.7705 -5.3661 8.6263 18 7 6.1164 -6.2732 9.5135 19 14 6.4014 -3.6151 8.7860 20 1 5.4511 -2.8190 9.6035 21 1 7.7321 -3.6266 9.4450 22 1 6.5228 -3.0077 7.4363 23 6 2.1925 -2.7430 2.3445 24 1 -0.3634 0.7481 0.7045 25 1 -0.3633 0.2362 -1.0002 26 1 -0.3633 -0.9842 0.2956 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.8235 -1.7863 -1.1676 31 1 1.5434 -0.3161 -2.1309 32 1 3.1164 -0.5751 -1.3392 33 1 0.4577 -2.0597 -0.4716 34 1 -0.0765 -4.4421 -0.1997 35 1 2.1158 -5.7949 3.5436 36 1 4.1201 -3.8570 3.9950 37 1 2.6992 -3.4342 4.9801 38 1 2.7358 -5.6940 6.0010 39 1 4.1567 -6.1161 5.0155 40 1 5.4386 -4.2771 6.0747 41 1 4.0181 -3.8546 7.0606 42 1 6.6995 -6.0330 10.2506 43 1 2.8383 -2.2919 3.0832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168436296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:05 Heat of formation + Delta-G solvation = 0.639384 kcal Electronic energy + Delta-G solvation = -21190.353786 eV Core-core repulsion = 18043.170353 eV Total energy + Delta-G solvation = -3147.183432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.12810 -39.09538 -36.28246 -34.54326 -33.62631 -31.83557 -31.20602 -29.65103 -27.80938 -27.78709 -26.63390 -23.78596 -23.19480 -21.99556 -20.63308 -20.16536 -17.87704 -17.18001 -16.68111 -16.44373 -15.67231 -15.53110 -15.08223 -14.86375 -14.38605 -14.32573 -13.93122 -13.83102 -13.46465 -13.29507 -12.89871 -12.70534 -12.64761 -12.32494 -12.25523 -12.07570 -11.92259 -11.26523 -11.18635 -11.08386 -10.95121 -10.87420 -10.17783 -9.98362 -9.76398 -9.70828 -9.38635 -9.24084 -8.81297 -8.56610 -7.62475 -6.06916 -4.05737 1.35164 1.52369 2.82686 3.29686 3.37036 3.39345 3.40426 3.95048 4.32777 4.40185 4.43006 4.53902 4.68517 4.84678 5.03558 5.13543 5.14907 5.22575 5.26818 5.29528 5.31109 5.40908 5.41789 5.48318 5.57743 5.67143 5.70456 5.82949 5.85375 5.86898 5.93821 6.20622 6.27234 6.41065 6.50763 6.75317 7.09892 7.20716 7.28290 7.34006 7.71662 7.76947 8.30182 8.50009 8.97420 9.54949 11.06443 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.003164 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.499936 B = 8848.588196 C = 9830.689666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.109 3.891 3 C -0.139 4.139 4 C -0.203 4.203 5 O -0.302 6.302 6 C 0.213 3.787 7 C -0.343 4.343 8 C 0.178 3.822 9 N -0.570 5.570 10 C 0.437 3.563 11 N -0.714 5.714 12 C 0.120 3.880 13 C -0.113 4.113 14 C -0.010 4.010 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.280 4.280 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.406 0.594 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 13.543 -23.142 29.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.071 3.929 3 C -0.196 4.196 4 C -0.260 4.260 5 O -0.214 6.214 6 C 0.160 3.840 7 C -0.367 4.367 8 C 0.020 3.980 9 N -0.291 5.291 10 C 0.201 3.799 11 N -0.344 5.344 12 C -0.004 4.004 13 C -0.151 4.151 14 C -0.048 4.048 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.306 4.306 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.242 0.758 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.417 12.914 -22.582 28.409 hybrid contribution 0.423 1.415 0.016 1.477 sum -10.994 14.329 -22.566 28.903 Atomic orbital electron populations 1.22883 0.94700 1.04860 1.03177 1.21819 0.94055 0.92972 0.84034 1.21818 1.02304 0.92458 1.02982 1.22935 1.02538 1.03491 0.96999 1.86129 1.72470 1.19677 1.43147 1.18805 0.90052 0.82818 0.92348 1.22345 1.10372 0.98353 1.05582 1.22146 0.93318 0.90127 0.92436 1.67242 1.16156 1.39740 1.06001 1.18080 0.87731 0.87254 0.86818 1.44824 1.51875 1.12596 1.25101 1.21746 0.92429 0.97486 0.88737 1.21683 1.00589 0.97117 0.95684 1.19499 0.94440 0.96807 0.94052 1.21100 1.29588 0.97259 1.08094 0.90976 1.25035 0.95780 0.97239 0.95448 1.69916 1.36219 1.33786 1.14228 0.86770 0.78374 0.85386 0.78716 1.20241 1.21355 1.18941 1.20579 1.12646 0.93568 1.03775 0.91584 0.90995 0.89461 0.91439 0.90414 0.91424 0.89202 0.90998 0.91599 0.83079 0.82963 0.75770 0.92056 0.92055 0.91949 0.91925 0.96323 0.96757 0.92682 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 8.13 37.15 0.30 -1.14 16 2 C 0.11 0.93 1.11 -90.62 -0.10 0.83 16 3 C -0.14 -0.96 8.76 37.16 0.33 -0.63 16 4 C -0.20 -1.51 8.09 37.16 0.30 -1.21 16 5 O -0.30 -3.68 9.80 -18.95 -0.19 -3.86 16 6 C 0.21 2.75 6.10 -38.87 -0.24 2.52 16 7 C -0.34 -3.69 5.86 -39.27 -0.23 -3.92 16 8 C 0.18 2.05 11.17 -17.61 -0.20 1.85 16 9 N -0.57 -8.26 10.39 -12.51 -0.13 -8.39 16 10 C 0.44 6.63 7.65 -155.02 -1.19 5.44 16 11 N -0.71 -10.72 5.73 -60.46 -0.35 -11.07 16 12 C 0.12 1.90 4.89 -4.04 -0.02 1.88 16 13 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 14 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 15 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 16 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 19 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 23 C -0.28 -4.08 9.29 -39.09 -0.36 -4.45 16 24 H 0.07 0.48 8.03 -51.93 -0.42 0.06 16 25 H 0.07 0.37 7.90 -51.93 -0.41 -0.04 16 26 H 0.09 0.72 4.70 -51.93 -0.24 0.47 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.74 4.45 -51.93 -0.23 0.51 16 31 H 0.07 0.38 7.95 -51.93 -0.41 -0.03 16 32 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.15 1.24 3.71 -52.49 -0.19 1.05 16 34 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.41 5.82 8.60 -40.82 -0.35 5.47 16 36 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 37 H 0.06 0.96 7.93 -51.93 -0.41 0.54 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.14 2.00 6.70 -52.49 -0.35 1.65 16 LS Contribution 339.42 15.07 5.11 5.11 Total: -1.00 -31.71 339.42 -8.28 -39.99 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.75 Total: 3.04 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -2.09 Total: -14.69 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.30 Total: -46.50 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.19 Total: -3.86 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.71 -8.28 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.631 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds