Wall clock time and date at job start Tue Mar 31 2020 00:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 C 1.53007 * 109.47256 * 240.00134 * 2 1 3 5 5 O 1.42895 * 109.47177 * 119.99887 * 2 1 3 6 6 C 1.35748 * 117.00308 * 62.98283 * 5 2 1 7 7 C 1.39488 * 120.79947 * 355.50229 * 6 5 2 8 8 C 1.37803 * 119.25676 * 180.02562 * 7 6 5 9 9 N 1.32057 * 120.91642 * 0.02562 * 8 7 6 10 10 C 1.32495 * 121.75524 * 359.65444 * 9 8 7 11 11 N 1.39013 * 119.67465 * 180.33634 * 10 9 8 12 12 C 1.46504 * 120.00128 * 180.29301 * 11 10 9 13 13 C 1.52994 * 109.47675 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47296 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00335 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00165 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00067 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99556 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47640 * 90.00110 * 19 17 15 21 21 H 1.48500 * 109.46993 * 210.00058 * 19 17 15 22 22 H 1.48504 * 109.47292 * 329.99612 * 19 17 15 23 23 C 1.38896 * 120.64511 * 0.63697 * 10 9 8 24 24 H 1.09002 * 109.47470 * 316.71923 * 1 2 3 25 25 H 1.09006 * 109.46945 * 76.71563 * 1 2 3 26 26 H 1.09000 * 109.47169 * 196.71640 * 1 2 3 27 27 H 1.09003 * 109.47575 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47177 * 299.99799 * 3 2 1 29 29 H 1.08997 * 109.47542 * 60.00045 * 3 2 1 30 30 H 1.08993 * 109.46535 * 290.38958 * 4 2 1 31 31 H 1.08995 * 109.47239 * 50.39139 * 4 2 1 32 32 H 1.09001 * 109.47057 * 170.39248 * 4 2 1 33 33 H 1.07999 * 120.37227 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.54184 * 179.97438 * 8 7 6 35 35 H 0.97002 * 120.00622 * 0.29037 * 11 10 9 36 36 H 1.08998 * 109.46933 * 300.00365 * 12 11 10 37 37 H 1.09003 * 109.46833 * 60.00037 * 12 11 10 38 38 H 1.08998 * 109.47224 * 300.00169 * 13 12 11 39 39 H 1.09007 * 109.46833 * 59.99605 * 13 12 11 40 40 H 1.09002 * 109.47253 * 299.99541 * 14 13 12 41 41 H 1.08991 * 109.47199 * 60.00443 * 14 13 12 42 42 H 0.97001 * 119.99159 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.48558 * 179.68201 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0062 -0.6736 1.1667 6 6 1.6937 -1.9888 1.2899 7 6 0.8633 -2.6157 0.3608 8 6 0.5663 -3.9522 0.5168 9 7 1.0560 -4.6422 1.5307 10 6 1.8532 -4.0870 2.4317 11 7 2.3498 -4.8558 3.4780 12 6 3.2267 -4.2477 4.4819 13 6 3.6291 -5.3029 5.5141 14 6 4.5453 -4.6679 6.5620 15 6 4.9422 -5.7074 7.5783 16 1 4.5770 -6.7198 7.4863 17 6 5.7705 -5.3661 8.6263 18 7 6.1164 -6.2732 9.5135 19 14 6.4014 -3.6151 8.7860 20 1 5.4511 -2.8190 9.6035 21 1 7.7321 -3.6266 9.4450 22 1 6.5228 -3.0077 7.4363 23 6 2.1925 -2.7430 2.3445 24 1 -0.3634 0.7481 0.7045 25 1 -0.3633 0.2362 -1.0002 26 1 -0.3633 -0.9842 0.2956 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.8235 -1.7863 -1.1676 31 1 1.5434 -0.3161 -2.1309 32 1 3.1164 -0.5751 -1.3392 33 1 0.4577 -2.0597 -0.4716 34 1 -0.0765 -4.4421 -0.1997 35 1 2.1158 -5.7949 3.5436 36 1 4.1201 -3.8570 3.9950 37 1 2.6992 -3.4342 4.9801 38 1 2.7358 -5.6940 6.0010 39 1 4.1567 -6.1161 5.0155 40 1 5.4386 -4.2771 6.0747 41 1 4.0181 -3.8546 7.0606 42 1 6.6995 -6.0330 10.2506 43 1 2.8383 -2.2919 3.0832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168436296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:05 Heat of formation + Delta-G solvation = -19.095935 kcal Electronic energy + Delta-G solvation = -21191.209573 eV Core-core repulsion = 18043.170353 eV Total energy + Delta-G solvation = -3148.039220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.99761 -40.02278 -37.55619 -35.42089 -35.24878 -33.59375 -32.22231 -30.83671 -28.79588 -28.33795 -27.89797 -25.10016 -24.26521 -23.24083 -22.00894 -21.25357 -19.01645 -18.75902 -17.91607 -17.36465 -16.64869 -16.57930 -16.27355 -16.18362 -15.79044 -15.23843 -15.13498 -14.76069 -14.69216 -14.33974 -14.21201 -13.74517 -13.62290 -13.58910 -13.16553 -12.88627 -12.76833 -12.70318 -12.65632 -11.97479 -11.89110 -11.81132 -11.71968 -11.64604 -11.59176 -11.34170 -10.92459 -10.76713 -10.36792 -9.76068 -8.68405 -8.29787 -6.34452 0.38519 0.54389 1.37341 1.39002 1.50922 1.97380 2.34225 2.36516 2.96554 3.05892 3.70368 3.82558 3.83255 3.94470 3.97281 4.09699 4.18220 4.20694 4.25052 4.42718 4.54941 4.62009 4.67169 4.75395 4.82713 4.86496 4.87474 4.90831 4.91463 4.94249 5.01295 5.15093 5.19089 5.31325 5.36637 5.41749 5.51120 5.54687 5.64365 6.00203 6.27294 6.42346 6.63662 6.73935 7.28111 7.30295 8.87070 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.003164 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.499936 B = 8848.588196 C = 9830.689666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.096 3.904 3 C -0.138 4.138 4 C -0.200 4.200 5 O -0.321 6.321 6 C 0.209 3.791 7 C -0.326 4.326 8 C 0.172 3.828 9 N -0.590 5.590 10 C 0.422 3.578 11 N -0.719 5.719 12 C 0.137 3.863 13 C -0.102 4.102 14 C -0.009 4.009 15 C -0.534 4.534 16 H 0.032 0.968 17 C 0.002 3.998 18 N -0.953 5.953 19 Si 0.952 3.048 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.243 1.243 23 C -0.302 4.302 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.181 0.819 34 H 0.188 0.812 35 H 0.407 0.593 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.266 0.734 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.619 16.144 -25.774 32.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.059 3.941 3 C -0.195 4.195 4 C -0.257 4.257 5 O -0.234 6.234 6 C 0.155 3.845 7 C -0.349 4.349 8 C 0.015 3.985 9 N -0.312 5.312 10 C 0.186 3.814 11 N -0.350 5.350 12 C 0.012 3.988 13 C -0.140 4.140 14 C -0.047 4.047 15 C -0.572 4.572 16 H 0.050 0.950 17 C -0.195 4.195 18 N -0.593 5.593 19 Si 0.775 3.225 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.167 1.167 23 C -0.328 4.328 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.198 0.802 34 H 0.205 0.795 35 H 0.243 0.757 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.462 15.530 -25.256 32.161 hybrid contribution 0.668 0.592 0.734 1.155 sum -11.795 16.122 -24.522 31.628 Atomic orbital electron populations 1.22865 0.93530 1.04209 1.04753 1.22214 0.95091 0.93462 0.83296 1.21872 1.01940 0.91675 1.04017 1.22918 1.02412 1.02886 0.97471 1.86121 1.72847 1.19325 1.45065 1.18941 0.90044 0.83298 0.92246 1.22658 1.08753 0.98136 1.05397 1.22796 0.93073 0.90591 0.92075 1.67264 1.16578 1.40632 1.06771 1.18161 0.88536 0.87470 0.87186 1.44645 1.52318 1.12668 1.25359 1.21419 0.92895 0.96212 0.88239 1.21458 0.99488 0.97590 0.95435 1.19442 0.95591 0.95728 0.93902 1.21487 1.29285 0.96919 1.09539 0.94985 1.26053 0.96111 1.02297 0.94992 1.70076 1.37494 1.36503 1.15265 0.85633 0.77739 0.79325 0.79818 1.19108 1.21093 1.16657 1.20644 1.13607 0.93804 1.04756 0.91860 0.88308 0.90429 0.92107 0.87816 0.91948 0.90029 0.88282 0.92332 0.80227 0.79481 0.75695 0.91717 0.91659 0.92386 0.92395 0.95656 0.95778 0.92488 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.25 8.13 71.98 0.59 -1.66 16 2 C 0.10 1.40 1.11 -10.79 -0.01 1.39 16 3 C -0.14 -1.60 8.76 71.98 0.63 -0.97 16 4 C -0.20 -2.38 8.09 71.98 0.58 -1.80 16 5 O -0.32 -7.43 9.80 -90.73 -0.89 -8.32 16 6 C 0.21 5.14 6.10 22.73 0.14 5.28 16 7 C -0.33 -6.27 5.86 22.47 0.13 -6.14 16 8 C 0.17 3.56 11.17 84.56 0.94 4.51 16 9 N -0.59 -16.48 10.39 -193.49 -2.01 -18.49 16 10 C 0.42 12.61 7.65 132.97 1.02 13.63 16 11 N -0.72 -21.52 5.73 -345.20 -1.98 -23.50 16 12 C 0.14 4.27 4.89 86.38 0.42 4.69 16 13 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 14 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 15 C -0.53 -30.89 9.66 25.60 0.25 -30.64 16 16 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 17 C 0.00 0.12 5.47 84.66 0.46 0.58 16 18 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 19 Si 0.95 44.21 27.47 68.60 1.88 46.09 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 22 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 23 C -0.30 -8.72 9.29 22.59 0.21 -8.51 16 24 H 0.06 0.77 8.03 -2.39 -0.02 0.75 16 25 H 0.10 0.59 7.90 -2.38 -0.02 0.57 16 26 H 0.08 1.04 4.70 -2.39 -0.01 1.03 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 1.10 4.45 -2.39 -0.01 1.09 16 31 H 0.10 0.63 7.95 -2.39 -0.02 0.62 16 32 H 0.06 0.79 8.12 -2.39 -0.02 0.77 16 33 H 0.18 2.33 3.71 -2.91 -0.01 2.32 16 34 H 0.19 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.41 11.75 8.60 -92.71 -0.80 10.95 16 36 H 0.06 1.98 7.93 -2.39 -0.02 1.96 16 37 H 0.07 1.99 7.93 -2.39 -0.02 1.97 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 41 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 42 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.13 3.80 6.70 -2.91 -0.02 3.78 16 Total: -1.00 -70.31 339.42 3.10 -67.21 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.15 Total: 20.62 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 5.64 Total: -23.58 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -3.69 Total: -102.02 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.89 Total: -8.32 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -70.31 3.10 -67.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.113 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds