Wall clock time and date at job start Tue Mar 31 2020 00:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47161 * 2 1 4 4 H 1.08990 * 109.47606 * 305.00336 * 3 2 1 5 5 C 1.53005 * 109.46723 * 65.00749 * 3 2 1 6 6 C 1.53005 * 109.46925 * 184.99992 * 3 2 1 7 7 C 1.53002 * 109.46615 * 65.92322 * 6 3 2 8 8 H 1.08996 * 109.47040 * 303.92965 * 7 6 3 9 9 C 1.53007 * 109.46743 * 183.93440 * 7 6 3 10 10 N 1.46493 * 109.47267 * 63.93448 * 7 6 3 11 11 C 1.39131 * 120.00056 * 204.99810 * 10 7 6 12 12 C 1.39165 * 119.63004 * 359.97438 * 11 10 7 13 13 C 1.38200 * 119.17162 * 179.97438 * 12 11 10 14 14 C 1.39454 * 118.44867 * 0.02562 * 13 12 11 15 15 O 1.35819 * 120.40276 * 180.02562 * 14 13 12 16 16 C 1.34809 * 116.99997 * 354.63404 * 15 14 13 17 17 H 1.08004 * 119.99956 * 5.09932 * 16 15 14 18 18 C 1.38635 * 119.99667 * 185.09416 * 16 15 14 19 19 N 1.31567 * 120.00286 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99609 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47329 * 60.00197 * 20 18 16 22 22 H 1.48501 * 109.46764 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47060 * 300.00127 * 20 18 16 24 24 C 1.38669 * 119.19183 * 359.97438 * 14 13 12 25 25 N 1.31925 * 120.75356 * 359.74487 * 24 14 13 26 26 H 1.09002 * 109.47461 * 59.99094 * 1 2 3 27 27 H 1.08997 * 109.47625 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46773 * 299.99676 * 1 2 3 29 29 H 1.09006 * 109.46541 * 240.00806 * 2 1 3 30 30 H 1.08994 * 109.47339 * 120.00627 * 2 1 3 31 31 H 1.09001 * 109.47131 * 184.29208 * 5 3 2 32 32 H 1.08998 * 109.47236 * 304.29012 * 5 3 2 33 33 H 1.08994 * 109.47171 * 64.29412 * 5 3 2 34 34 H 1.08995 * 109.47177 * 305.92020 * 6 3 2 35 35 H 1.09004 * 109.46632 * 185.92013 * 6 3 2 36 36 H 1.08997 * 109.46633 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.46861 * 59.99786 * 9 7 6 38 38 H 1.08999 * 109.46748 * 300.00052 * 9 7 6 39 39 H 0.97002 * 120.00127 * 25.00222 * 10 7 6 40 40 H 1.08001 * 120.41101 * 359.95788 * 12 11 10 41 41 H 1.07999 * 120.77876 * 180.02562 * 13 12 11 42 42 H 0.97004 * 120.00499 * 179.97438 * 19 18 16 43 43 H 1.08003 * 119.61603 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1264 1.3075 6 6 3.5649 1.4443 -0.1257 7 6 3.9641 0.8949 -1.4968 8 1 3.5331 -0.0973 -1.6301 9 6 5.4889 0.8047 -1.5857 10 7 3.4658 1.7887 -2.5450 11 6 3.2287 1.2962 -3.8244 12 6 3.4680 -0.0467 -4.1000 13 6 3.2287 -0.5260 -5.3740 14 6 2.7542 0.3615 -6.3394 15 8 2.5050 -0.0671 -7.6039 16 6 2.8415 -1.3394 -7.8963 17 1 3.2110 -1.9924 -7.1194 18 6 2.7132 -1.8095 -9.1942 19 7 2.2635 -1.0138 -10.1406 20 14 3.1788 -3.5726 -9.5992 21 1 2.3435 -4.5020 -8.7968 22 1 2.9516 -3.8249 -11.0449 23 1 4.6119 -3.7924 -9.2780 24 6 2.5387 1.6866 -5.9923 25 7 2.7727 2.1090 -4.7646 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.9317 3.1749 1.2759 32 1 0.5549 2.0579 1.4342 33 1 2.1312 1.6338 2.1438 34 1 3.9946 0.8179 0.6559 35 1 3.9369 2.4634 -0.0203 36 1 5.7733 0.4129 -2.5623 37 1 5.8596 0.1397 -0.8057 38 1 5.9199 1.7969 -1.4523 39 1 3.3012 2.7239 -2.3471 40 1 3.8364 -0.7061 -3.3280 41 1 3.4050 -1.5636 -5.6163 42 1 2.1741 -1.3426 -11.0488 43 1 2.1709 2.3797 -6.7344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168692908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:27 Heat of formation + Delta-G solvation = -10.787159 kcal Electronic energy + Delta-G solvation = -21625.605084 eV Core-core repulsion = 18477.926160 eV Total energy + Delta-G solvation = -3147.678924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.68718 -38.30596 -36.96593 -35.02467 -32.31816 -31.26814 -31.20609 -29.91104 -27.61625 -26.91168 -25.18826 -23.63265 -23.06272 -21.80561 -20.77253 -19.68008 -18.12802 -17.46884 -16.23186 -15.95426 -15.26993 -14.87815 -14.71947 -14.42983 -14.04157 -13.84518 -13.64660 -13.40866 -13.25782 -12.74186 -12.70712 -12.30942 -12.25795 -12.12851 -12.04529 -11.77988 -11.66828 -11.54288 -11.28900 -11.20382 -11.01766 -10.68578 -10.52042 -10.51175 -10.28116 -9.61914 -9.29464 -8.93339 -8.70184 -8.51317 -6.60730 -6.39614 -3.96867 2.06948 2.46474 3.14752 3.16152 3.18647 3.65403 4.00457 4.55530 4.65563 4.70080 4.77031 5.05696 5.13084 5.16786 5.28302 5.34489 5.37030 5.44156 5.48791 5.49860 5.52771 5.62682 5.64717 5.77157 5.82258 5.84165 5.87719 5.96968 5.98246 6.03081 6.04688 6.17535 6.23245 6.33515 6.34987 6.56703 6.77129 7.14213 7.24820 7.30069 7.73845 8.01662 8.20339 8.95679 9.05742 9.75897 10.78382 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.003606 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.422114 B = 7762.842807 C = 7924.030777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.077 0.923 5 C -0.148 4.148 6 C -0.120 4.120 7 C 0.157 3.843 8 H 0.078 0.922 9 C -0.171 4.171 10 N -0.732 5.732 11 C 0.314 3.686 12 C -0.186 4.186 13 C -0.155 4.155 14 C 0.063 3.937 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.087 0.913 18 C 0.039 3.961 19 N -0.865 5.865 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C 0.068 3.932 25 N -0.503 5.503 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.394 0.606 40 H 0.116 0.884 41 H 0.135 0.865 42 H 0.270 0.730 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 1.933 20.231 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.095 0.905 5 C -0.205 4.205 6 C -0.158 4.158 7 C 0.051 3.949 8 H 0.096 0.904 9 C -0.230 4.230 10 N -0.370 5.370 11 C 0.082 3.918 12 C -0.210 4.210 13 C -0.182 4.182 14 C 0.008 3.992 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.104 0.896 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.763 3.237 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.091 4.091 25 N -0.220 5.220 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.228 0.772 40 H 0.134 0.866 41 H 0.152 0.848 42 H 0.079 0.921 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.535 2.712 20.036 20.277 hybrid contribution 0.426 -1.537 -0.331 1.629 sum 1.961 1.175 19.705 19.837 Atomic orbital electron populations 1.21813 0.96063 1.01436 1.01752 1.21608 0.95923 0.96420 1.01829 1.21168 0.95086 0.96527 0.98401 0.90456 1.21889 1.01371 1.00099 0.97183 1.21913 0.95893 1.01705 0.96262 1.20812 0.93131 0.94473 0.86506 0.90396 1.22333 0.96581 1.01855 1.02185 1.44026 1.75269 1.11414 1.06336 1.17919 0.98409 0.89211 0.86239 1.21111 1.07927 0.94647 0.97344 1.21399 1.03394 1.00774 0.92653 1.20242 0.97729 0.93911 0.87339 1.83994 1.71806 1.30341 1.22101 1.21176 1.45196 0.85290 0.95069 0.89567 1.25226 0.96897 0.99952 0.94412 1.70026 1.42561 1.35733 1.01694 0.85824 0.79141 0.80705 0.77994 1.19596 1.20308 1.19609 1.21441 1.03538 0.92058 0.92088 1.66930 1.16692 1.37462 1.00888 0.92639 0.93008 0.92814 0.91604 0.92392 0.92962 0.92511 0.92997 0.90879 0.91564 0.92081 0.92368 0.92597 0.77188 0.86628 0.84785 0.92058 0.83250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 37.16 0.36 -1.13 16 2 C -0.12 -1.16 5.28 -26.73 -0.14 -1.30 16 3 C -0.09 -0.87 2.33 -90.61 -0.21 -1.08 16 4 H 0.08 0.87 7.55 -51.93 -0.39 0.48 16 5 C -0.15 -1.18 9.04 37.16 0.34 -0.84 16 6 C -0.12 -1.05 4.22 -26.73 -0.11 -1.16 16 7 C 0.16 1.74 2.13 -67.93 -0.14 1.60 16 8 H 0.08 0.92 4.63 -51.93 -0.24 0.68 16 9 C -0.17 -1.82 9.40 37.16 0.35 -1.47 16 10 N -0.73 -10.26 4.56 -53.89 -0.25 -10.51 16 11 C 0.31 5.75 7.63 -154.90 -1.18 4.57 16 12 C -0.19 -3.45 8.82 -39.25 -0.35 -3.79 16 13 C -0.16 -3.35 9.25 -39.14 -0.36 -3.71 16 14 C 0.06 1.53 6.67 -38.97 -0.26 1.27 16 15 O -0.18 -5.09 9.77 -0.11 0.00 -5.10 16 16 C -0.39 -10.89 9.50 30.88 0.29 -10.60 16 17 H 0.09 2.21 5.25 -52.48 -0.28 1.93 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 20 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C 0.07 1.50 11.14 -17.35 -0.19 1.31 16 25 N -0.50 -10.29 10.38 -12.25 -0.13 -10.42 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.46 6.48 -51.92 -0.34 0.12 16 29 H 0.07 0.72 6.31 -51.93 -0.33 0.40 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.45 6.37 -51.93 -0.33 0.12 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.39 5.26 8.72 -40.82 -0.36 4.90 16 40 H 0.12 1.82 6.06 -52.49 -0.32 1.50 16 41 H 0.13 2.84 5.75 -52.49 -0.30 2.54 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.15 3.13 8.06 -52.48 -0.42 2.71 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -30.32 344.26 -7.80 -38.13 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.64 Total: 7.25 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -1.71 Total: -15.36 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.39 Total: -45.60 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.32 -7.80 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168692908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.339 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds