Wall clock time and date at job start Tue Mar 31 2020 00:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47161 * 2 1 4 4 H 1.08990 * 109.47606 * 305.00336 * 3 2 1 5 5 C 1.53005 * 109.46723 * 65.00749 * 3 2 1 6 6 C 1.53005 * 109.46925 * 184.99992 * 3 2 1 7 7 C 1.53002 * 109.46615 * 65.92322 * 6 3 2 8 8 H 1.08996 * 109.47040 * 303.92965 * 7 6 3 9 9 C 1.53007 * 109.46743 * 183.93440 * 7 6 3 10 10 N 1.46493 * 109.47267 * 63.93448 * 7 6 3 11 11 C 1.39131 * 120.00056 * 204.99810 * 10 7 6 12 12 C 1.39165 * 119.63004 * 359.97438 * 11 10 7 13 13 C 1.38200 * 119.17162 * 179.97438 * 12 11 10 14 14 C 1.39454 * 118.44867 * 0.02562 * 13 12 11 15 15 O 1.35819 * 120.40276 * 180.02562 * 14 13 12 16 16 C 1.34809 * 116.99997 * 354.63404 * 15 14 13 17 17 H 1.08004 * 119.99956 * 5.09932 * 16 15 14 18 18 C 1.38635 * 119.99667 * 185.09416 * 16 15 14 19 19 N 1.31567 * 120.00286 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99609 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47329 * 60.00197 * 20 18 16 22 22 H 1.48501 * 109.46764 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47060 * 300.00127 * 20 18 16 24 24 C 1.38669 * 119.19183 * 359.97438 * 14 13 12 25 25 N 1.31925 * 120.75356 * 359.74487 * 24 14 13 26 26 H 1.09002 * 109.47461 * 59.99094 * 1 2 3 27 27 H 1.08997 * 109.47625 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46773 * 299.99676 * 1 2 3 29 29 H 1.09006 * 109.46541 * 240.00806 * 2 1 3 30 30 H 1.08994 * 109.47339 * 120.00627 * 2 1 3 31 31 H 1.09001 * 109.47131 * 184.29208 * 5 3 2 32 32 H 1.08998 * 109.47236 * 304.29012 * 5 3 2 33 33 H 1.08994 * 109.47171 * 64.29412 * 5 3 2 34 34 H 1.08995 * 109.47177 * 305.92020 * 6 3 2 35 35 H 1.09004 * 109.46632 * 185.92013 * 6 3 2 36 36 H 1.08997 * 109.46633 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.46861 * 59.99786 * 9 7 6 38 38 H 1.08999 * 109.46748 * 300.00052 * 9 7 6 39 39 H 0.97002 * 120.00127 * 25.00222 * 10 7 6 40 40 H 1.08001 * 120.41101 * 359.95788 * 12 11 10 41 41 H 1.07999 * 120.77876 * 180.02562 * 13 12 11 42 42 H 0.97004 * 120.00499 * 179.97438 * 19 18 16 43 43 H 1.08003 * 119.61603 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1264 1.3075 6 6 3.5649 1.4443 -0.1257 7 6 3.9641 0.8949 -1.4968 8 1 3.5331 -0.0973 -1.6301 9 6 5.4889 0.8047 -1.5857 10 7 3.4658 1.7887 -2.5450 11 6 3.2287 1.2962 -3.8244 12 6 3.4680 -0.0467 -4.1000 13 6 3.2287 -0.5260 -5.3740 14 6 2.7542 0.3615 -6.3394 15 8 2.5050 -0.0671 -7.6039 16 6 2.8415 -1.3394 -7.8963 17 1 3.2110 -1.9924 -7.1194 18 6 2.7132 -1.8095 -9.1942 19 7 2.2635 -1.0138 -10.1406 20 14 3.1788 -3.5726 -9.5992 21 1 2.3435 -4.5020 -8.7968 22 1 2.9516 -3.8249 -11.0449 23 1 4.6119 -3.7924 -9.2780 24 6 2.5387 1.6866 -5.9923 25 7 2.7727 2.1090 -4.7646 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.9317 3.1749 1.2759 32 1 0.5549 2.0579 1.4342 33 1 2.1312 1.6338 2.1438 34 1 3.9946 0.8179 0.6559 35 1 3.9369 2.4634 -0.0203 36 1 5.7733 0.4129 -2.5623 37 1 5.8596 0.1397 -0.8057 38 1 5.9199 1.7969 -1.4523 39 1 3.3012 2.7239 -2.3471 40 1 3.8364 -0.7061 -3.3280 41 1 3.4050 -1.5636 -5.6163 42 1 2.1741 -1.3426 -11.0488 43 1 2.1709 2.3797 -6.7344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168692908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:26 Heat of formation + Delta-G solvation = -28.357227 kcal Electronic energy + Delta-G solvation = -21626.366980 eV Core-core repulsion = 18477.926160 eV Total energy + Delta-G solvation = -3148.440820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.30557 -39.55053 -38.47528 -36.11871 -34.26947 -32.89459 -32.47103 -30.72886 -29.17012 -27.71231 -27.08459 -24.68510 -24.40774 -23.33442 -21.86559 -20.51694 -19.99298 -19.14243 -17.84888 -17.44178 -16.24426 -16.14280 -16.00951 -15.81470 -15.73523 -15.09543 -14.96475 -14.60999 -14.52825 -14.05260 -13.93870 -13.71010 -13.53296 -13.34970 -13.13235 -12.84164 -12.77072 -12.68976 -12.55001 -12.26642 -12.17391 -12.02101 -11.56878 -11.46545 -11.27055 -11.07388 -10.94905 -10.56940 -10.36725 -10.26141 -8.41757 -8.20874 -6.06656 0.38174 0.76662 1.37408 1.48214 1.53459 2.19672 2.39431 2.91226 3.22490 3.55552 3.74330 3.86412 3.92088 4.01813 4.10364 4.22880 4.33496 4.34471 4.41587 4.46792 4.65101 4.71384 4.77492 4.84148 4.87342 4.90100 4.96297 4.99789 5.02398 5.09697 5.16127 5.24535 5.26822 5.29119 5.37730 5.40621 5.51925 5.56803 5.60905 5.65095 6.02023 6.35176 6.81178 7.02294 7.37891 7.83873 8.81463 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.003606 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.422114 B = 7762.842807 C = 7924.030777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.092 4.092 4 H 0.053 0.947 5 C -0.145 4.145 6 C -0.111 4.111 7 C 0.151 3.849 8 H 0.076 0.924 9 C -0.167 4.167 10 N -0.717 5.717 11 C 0.334 3.666 12 C -0.182 4.182 13 C -0.149 4.149 14 C 0.022 3.978 15 O -0.229 6.229 16 C -0.411 4.411 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.016 2.984 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.258 1.258 24 C 0.064 3.936 25 N -0.516 5.516 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.400 0.600 40 H 0.151 0.849 41 H 0.136 0.864 42 H 0.271 0.729 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 0.939 23.857 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.072 0.928 5 C -0.202 4.202 6 C -0.149 4.149 7 C 0.046 3.954 8 H 0.094 0.906 9 C -0.226 4.226 10 N -0.354 5.354 11 C 0.099 3.901 12 C -0.206 4.206 13 C -0.176 4.176 14 C -0.031 4.031 15 O -0.135 6.135 16 C -0.488 4.488 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.836 3.164 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.093 4.093 25 N -0.234 5.234 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.236 0.764 40 H 0.169 0.831 41 H 0.154 0.846 42 H 0.080 0.920 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.896 1.752 23.750 23.990 hybrid contribution 0.041 -1.051 -1.067 1.498 sum 2.937 0.701 22.683 22.883 Atomic orbital electron populations 1.21819 0.96456 1.01461 1.01407 1.21614 0.95625 0.96654 1.01865 1.21127 0.95434 0.96123 0.98368 0.92837 1.21852 1.01420 1.00286 0.96648 1.21879 0.95400 1.02606 0.95000 1.21115 0.93655 0.93896 0.86742 0.90582 1.22294 0.95663 1.02666 1.01961 1.44291 1.73612 1.12342 1.05155 1.18335 0.95427 0.89160 0.87224 1.21389 1.07072 0.95251 0.96871 1.21562 1.02211 1.00568 0.93289 1.20595 1.00293 0.95235 0.87007 1.83957 1.74369 1.30928 1.24288 1.21723 1.45366 0.85720 0.95964 0.88241 1.26531 0.96621 1.05033 0.93901 1.70185 1.45249 1.38422 1.02245 0.84679 0.79445 0.74409 0.77885 1.18120 1.19867 1.18194 1.21513 1.03267 0.91584 0.92929 1.67036 1.18007 1.37748 1.00635 0.94569 0.92842 0.91583 0.93124 0.90684 0.92618 0.92719 0.91689 0.88559 0.90659 0.94164 0.89729 0.92220 0.76446 0.83146 0.84593 0.91966 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.67 71.98 0.70 -2.05 16 2 C -0.12 -2.00 5.28 30.59 0.16 -1.84 16 3 C -0.09 -1.45 2.33 -10.79 -0.03 -1.47 16 4 H 0.05 1.10 7.55 -2.39 -0.02 1.09 16 5 C -0.14 -1.84 9.04 71.98 0.65 -1.19 16 6 C -0.11 -1.50 4.22 30.60 0.13 -1.37 16 7 C 0.15 2.82 2.13 45.00 0.10 2.91 16 8 H 0.08 1.52 4.63 -2.39 -0.01 1.51 16 9 C -0.17 -2.92 9.40 71.98 0.68 -2.24 16 10 N -0.72 -18.31 4.56 -324.42 -1.48 -19.79 16 11 C 0.33 11.72 7.63 133.03 1.02 12.73 16 12 C -0.18 -6.43 8.82 22.48 0.20 -6.23 16 13 C -0.15 -6.47 9.25 22.55 0.21 -6.26 16 14 C 0.02 1.09 6.67 22.67 0.15 1.24 16 15 O -0.23 -13.78 9.77 -23.30 -0.23 -14.01 16 16 C -0.41 -23.80 9.50 67.91 0.64 -23.16 16 17 H 0.10 5.21 5.25 -2.91 -0.02 5.19 16 18 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 19 N -0.92 -56.84 13.67 21.61 0.30 -56.54 16 20 Si 1.02 42.65 29.55 68.60 2.03 44.68 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 C 0.06 2.94 11.14 84.78 0.94 3.89 16 25 N -0.52 -21.04 10.38 -192.67 -2.00 -23.04 16 26 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.00 6.48 -2.38 -0.02 0.98 16 29 H 0.05 0.99 6.31 -2.38 -0.02 0.98 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.72 6.37 -2.39 -0.02 0.71 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.04 0.88 7.65 -2.39 -0.02 0.86 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.40 9.67 8.72 -92.71 -0.81 8.87 16 40 H 0.15 4.25 6.06 -2.91 -0.02 4.24 16 41 H 0.14 5.75 5.75 -2.91 -0.02 5.74 16 42 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.15 6.63 8.06 -2.91 -0.02 6.61 16 Total: -1.00 -69.43 344.26 4.83 -64.61 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.20 Total: 30.00 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 6.01 Total: -25.91 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -3.19 Total: -99.37 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.23 Total: -14.01 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -69.43 4.83 -64.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168692908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.248 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds