Wall clock time and date at job start Tue Mar 31 2020 00:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47054 * 2 1 4 4 H 1.09004 * 109.47315 * 55.00479 * 3 2 1 5 5 C 1.52999 * 109.47434 * 295.00346 * 3 2 1 6 6 C 1.53006 * 109.47209 * 175.00263 * 3 2 1 7 7 C 1.53003 * 109.46860 * 294.10020 * 6 3 2 8 8 H 1.08999 * 109.46838 * 56.19074 * 7 6 3 9 9 C 1.52996 * 109.46898 * 176.18612 * 7 6 3 10 10 N 1.46491 * 109.47221 * 296.18900 * 7 6 3 11 11 C 1.39125 * 120.00357 * 155.00149 * 10 7 6 12 12 C 1.39174 * 119.62571 * 359.97438 * 11 10 7 13 13 C 1.38206 * 119.16739 * 179.97438 * 12 11 10 14 14 C 1.39459 * 118.45024 * 359.97438 * 13 12 11 15 15 O 1.35815 * 120.40074 * 179.97438 * 14 13 12 16 16 C 1.34808 * 117.00430 * 5.39629 * 15 14 13 17 17 H 1.08004 * 119.99593 * 354.90083 * 16 15 14 18 18 C 1.38628 * 120.00353 * 174.90394 * 16 15 14 19 19 N 1.31578 * 119.99669 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00252 * 179.72244 * 18 16 15 21 21 H 1.48502 * 109.47050 * 270.27729 * 20 18 16 22 22 H 1.48505 * 109.47054 * 30.27136 * 20 18 16 23 23 H 1.48496 * 109.47488 * 150.27072 * 20 18 16 24 24 C 1.38661 * 119.19138 * 0.25445 * 14 13 12 25 25 N 1.31935 * 120.75930 * 359.47407 * 24 14 13 26 26 H 1.08996 * 109.47193 * 59.99388 * 1 2 3 27 27 H 1.09001 * 109.46894 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46673 * 299.99615 * 1 2 3 29 29 H 1.09007 * 109.46662 * 240.00507 * 2 1 3 30 30 H 1.08996 * 109.47193 * 120.00612 * 2 1 3 31 31 H 1.08995 * 109.47403 * 65.34403 * 5 3 2 32 32 H 1.09007 * 109.47010 * 185.34335 * 5 3 2 33 33 H 1.09002 * 109.46982 * 305.34113 * 5 3 2 34 34 H 1.09000 * 109.47099 * 174.10211 * 6 3 2 35 35 H 1.09001 * 109.46623 * 54.09719 * 6 3 2 36 36 H 1.09002 * 109.47471 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47239 * 300.00075 * 9 7 6 38 38 H 1.08999 * 109.47151 * 60.00027 * 9 7 6 39 39 H 0.97001 * 119.99963 * 334.99447 * 10 7 6 40 40 H 1.07998 * 120.41887 * 0.02562 * 12 11 10 41 41 H 1.08001 * 120.77366 * 179.97438 * 13 12 11 42 42 H 0.96997 * 120.00133 * 359.73378 * 19 18 16 43 43 H 1.08001 * 119.62154 * 179.74507 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 6 3.9643 0.8944 1.4964 8 1 3.5351 -0.0988 1.6285 9 6 5.4891 0.8072 1.5864 10 7 3.4634 1.7862 2.5452 11 6 3.2264 1.2920 3.8240 12 6 3.4673 -0.0510 4.0981 13 6 3.2291 -0.5317 5.3718 14 6 2.7541 0.3544 6.3383 15 8 2.5060 -0.0757 7.6024 16 6 2.8445 -1.3477 7.8937 17 1 3.2147 -1.9995 7.1161 18 6 2.7174 -1.8191 9.1911 19 7 2.2667 -1.0249 10.1384 20 14 3.1791 -3.5839 9.5932 21 1 1.9919 -4.4585 9.4172 22 1 4.2631 -4.0318 8.6822 23 1 3.6494 -3.6646 10.9994 24 6 2.5326 1.6785 5.9913 25 7 2.7757 2.1048 4.7667 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.5494 2.2103 -1.3525 32 1 2.0783 3.1216 -1.3490 33 1 1.9896 1.5353 -2.1517 34 1 3.9368 2.4635 0.0206 35 1 3.9946 0.8182 -0.6563 36 1 5.7737 0.4150 2.5627 37 1 5.8617 0.1436 0.8060 38 1 5.9183 1.8003 1.4542 39 1 3.2971 2.7213 2.3481 40 1 3.8365 -0.7092 3.3255 41 1 3.4066 -1.5694 5.6130 42 1 2.0272 -0.1084 9.9298 43 1 2.1608 2.3697 6.7332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168692910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:30 Heat of formation + Delta-G solvation = -17.646067 kcal Electronic energy + Delta-G solvation = -21660.296007 eV Core-core repulsion = 18512.319658 eV Total energy + Delta-G solvation = -3147.976349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.76858 -38.37393 -37.09320 -35.08184 -32.34827 -31.31052 -31.24544 -29.94910 -27.60778 -26.92308 -24.86601 -23.64899 -23.07853 -21.85095 -20.84440 -19.72452 -18.47849 -17.51720 -16.22457 -16.10972 -15.29683 -14.92809 -14.90081 -14.16397 -13.94390 -13.91505 -13.78901 -13.56455 -13.42934 -12.80056 -12.77073 -12.51996 -12.33678 -12.20309 -12.13182 -11.81492 -11.77203 -11.42105 -11.22792 -10.90946 -10.71232 -10.57145 -10.48671 -10.32103 -10.31049 -9.74378 -9.33710 -8.98758 -8.74497 -8.50373 -6.74071 -6.67576 -4.00093 1.98957 2.39025 3.24475 3.31026 3.44046 3.59669 4.14368 4.51943 4.62081 4.65681 4.74046 5.02980 5.11361 5.14147 5.21758 5.26702 5.34264 5.39441 5.41871 5.45961 5.49876 5.58022 5.61262 5.73777 5.78887 5.81441 5.83992 5.89853 5.94730 5.97039 6.00587 6.12320 6.19781 6.29729 6.31582 6.48378 6.72327 7.09102 7.13787 7.47946 7.66424 8.12805 8.43564 8.87215 8.97419 9.65530 10.71773 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.003619 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.950859 B = 7736.002473 C = 7895.359020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.077 0.923 5 C -0.147 4.147 6 C -0.120 4.120 7 C 0.157 3.843 8 H 0.078 0.922 9 C -0.171 4.171 10 N -0.731 5.731 11 C 0.317 3.683 12 C -0.186 4.186 13 C -0.150 4.150 14 C 0.066 3.934 15 O -0.204 6.204 16 C -0.471 4.471 17 H 0.079 0.921 18 C 0.009 3.991 19 N -0.884 5.884 20 Si 1.098 2.902 21 H -0.281 1.281 22 H -0.284 1.284 23 H -0.276 1.276 24 C 0.065 3.935 25 N -0.503 5.503 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.394 0.606 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.282 0.718 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 2.204 -20.942 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.095 0.905 5 C -0.204 4.204 6 C -0.158 4.158 7 C 0.050 3.950 8 H 0.096 0.904 9 C -0.230 4.230 10 N -0.370 5.370 11 C 0.084 3.916 12 C -0.210 4.210 13 C -0.177 4.177 14 C 0.011 3.989 15 O -0.108 6.108 16 C -0.547 4.547 17 H 0.097 0.903 18 C -0.196 4.196 19 N -0.517 5.517 20 Si 0.922 3.078 21 H -0.208 1.208 22 H -0.209 1.209 23 H -0.201 1.201 24 C -0.093 4.093 25 N -0.219 5.219 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.229 0.771 40 H 0.135 0.865 41 H 0.153 0.847 42 H 0.092 0.908 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.754 1.882 -19.716 19.884 hybrid contribution 0.122 0.474 -1.257 1.349 sum 1.876 2.356 -20.974 21.189 Atomic orbital electron populations 1.21797 0.96039 1.01448 1.01736 1.21618 0.95950 0.96361 1.01834 1.21170 0.95065 0.96547 0.98415 0.90493 1.21874 1.01276 1.00107 0.97162 1.21918 0.95916 1.01724 0.96223 1.20823 0.93138 0.94493 0.86502 0.90379 1.22331 0.96526 1.01897 1.02205 1.44036 1.75078 1.11522 1.06330 1.17933 0.98260 0.89149 0.86218 1.21135 1.07848 0.94682 0.97347 1.21421 1.02933 1.00852 0.92525 1.20087 0.98138 0.93838 0.86851 1.83674 1.72702 1.31077 1.23372 1.22140 1.49075 0.85532 0.97973 0.90300 1.26467 0.96101 1.07227 0.89805 1.70544 1.37668 1.08911 1.34578 0.83066 0.76604 0.71425 0.76682 1.20773 1.20937 1.20081 1.21407 1.03694 0.91914 0.92321 1.66934 1.16824 1.37354 1.00836 0.92838 0.92998 0.92678 0.92350 0.91646 0.92635 0.92930 0.92954 0.91542 0.90822 0.92109 0.92294 0.92572 0.77147 0.86494 0.84656 0.90765 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.67 37.16 0.36 -1.12 16 2 C -0.12 -1.15 5.28 -26.73 -0.14 -1.29 16 3 C -0.09 -0.86 2.33 -90.62 -0.21 -1.07 16 4 H 0.08 0.86 7.54 -51.93 -0.39 0.47 16 5 C -0.15 -1.16 8.81 37.16 0.33 -0.83 16 6 C -0.12 -1.04 4.22 -26.73 -0.11 -1.15 16 7 C 0.16 1.73 2.13 -67.94 -0.14 1.58 16 8 H 0.08 0.92 4.64 -51.93 -0.24 0.68 16 9 C -0.17 -1.81 9.41 37.16 0.35 -1.46 16 10 N -0.73 -10.19 4.56 -53.90 -0.25 -10.44 16 11 C 0.32 5.78 7.63 -154.90 -1.18 4.60 16 12 C -0.19 -3.45 8.83 -39.25 -0.35 -3.80 16 13 C -0.15 -3.28 9.25 -39.14 -0.36 -3.64 16 14 C 0.07 1.60 6.67 -38.97 -0.26 1.34 16 15 O -0.20 -5.74 9.17 -0.09 0.00 -5.74 16 16 C -0.47 -13.24 9.50 30.88 0.29 -12.95 16 17 H 0.08 2.08 5.25 -52.48 -0.28 1.81 16 18 C 0.01 0.25 5.49 -17.52 -0.10 0.16 16 19 N -0.88 -26.52 13.70 55.48 0.76 -25.76 16 20 Si 1.10 23.81 29.92 -169.99 -5.09 18.72 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 C 0.07 1.44 11.14 -17.35 -0.19 1.24 16 25 N -0.50 -10.24 10.39 -12.25 -0.13 -10.37 16 26 H 0.05 0.46 6.69 -51.93 -0.35 0.11 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.72 6.31 -51.93 -0.33 0.39 16 31 H 0.05 0.44 6.83 -51.93 -0.35 0.08 16 32 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.76 7.66 -51.93 -0.40 0.37 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.39 5.22 8.71 -40.82 -0.36 4.87 16 40 H 0.12 1.85 6.06 -52.49 -0.32 1.53 16 41 H 0.14 2.94 5.75 -52.49 -0.30 2.64 16 42 H 0.28 8.64 7.97 -40.82 -0.33 8.32 16 43 H 0.15 3.04 8.06 -52.49 -0.42 2.61 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -30.56 344.15 -7.89 -38.46 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.66 Total: 8.33 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -1.72 Total: -18.40 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.39 Total: -46.56 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: 0.00 Total: -5.74 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.09 Total: 18.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.56 -7.89 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168692910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.811 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds