Wall clock time and date at job start Tue Mar 31 2020 00:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47054 * 2 1 4 4 H 1.09004 * 109.47315 * 55.00479 * 3 2 1 5 5 C 1.52999 * 109.47434 * 295.00346 * 3 2 1 6 6 C 1.53006 * 109.47209 * 175.00263 * 3 2 1 7 7 C 1.53003 * 109.46860 * 294.10020 * 6 3 2 8 8 H 1.08999 * 109.46838 * 56.19074 * 7 6 3 9 9 C 1.52996 * 109.46898 * 176.18612 * 7 6 3 10 10 N 1.46491 * 109.47221 * 296.18900 * 7 6 3 11 11 C 1.39125 * 120.00357 * 155.00149 * 10 7 6 12 12 C 1.39174 * 119.62571 * 359.97438 * 11 10 7 13 13 C 1.38206 * 119.16739 * 179.97438 * 12 11 10 14 14 C 1.39459 * 118.45024 * 359.97438 * 13 12 11 15 15 O 1.35815 * 120.40074 * 179.97438 * 14 13 12 16 16 C 1.34808 * 117.00430 * 5.39629 * 15 14 13 17 17 H 1.08004 * 119.99593 * 354.90083 * 16 15 14 18 18 C 1.38628 * 120.00353 * 174.90394 * 16 15 14 19 19 N 1.31578 * 119.99669 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00252 * 179.72244 * 18 16 15 21 21 H 1.48502 * 109.47050 * 270.27729 * 20 18 16 22 22 H 1.48505 * 109.47054 * 30.27136 * 20 18 16 23 23 H 1.48496 * 109.47488 * 150.27072 * 20 18 16 24 24 C 1.38661 * 119.19138 * 0.25445 * 14 13 12 25 25 N 1.31935 * 120.75930 * 359.47407 * 24 14 13 26 26 H 1.08996 * 109.47193 * 59.99388 * 1 2 3 27 27 H 1.09001 * 109.46894 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46673 * 299.99615 * 1 2 3 29 29 H 1.09007 * 109.46662 * 240.00507 * 2 1 3 30 30 H 1.08996 * 109.47193 * 120.00612 * 2 1 3 31 31 H 1.08995 * 109.47403 * 65.34403 * 5 3 2 32 32 H 1.09007 * 109.47010 * 185.34335 * 5 3 2 33 33 H 1.09002 * 109.46982 * 305.34113 * 5 3 2 34 34 H 1.09000 * 109.47099 * 174.10211 * 6 3 2 35 35 H 1.09001 * 109.46623 * 54.09719 * 6 3 2 36 36 H 1.09002 * 109.47471 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47239 * 300.00075 * 9 7 6 38 38 H 1.08999 * 109.47151 * 60.00027 * 9 7 6 39 39 H 0.97001 * 119.99963 * 334.99447 * 10 7 6 40 40 H 1.07998 * 120.41887 * 0.02562 * 12 11 10 41 41 H 1.08001 * 120.77366 * 179.97438 * 13 12 11 42 42 H 0.96997 * 120.00133 * 359.73378 * 19 18 16 43 43 H 1.08001 * 119.62154 * 179.74507 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 6 3.9643 0.8944 1.4964 8 1 3.5351 -0.0988 1.6285 9 6 5.4891 0.8072 1.5864 10 7 3.4634 1.7862 2.5452 11 6 3.2264 1.2920 3.8240 12 6 3.4673 -0.0510 4.0981 13 6 3.2291 -0.5317 5.3718 14 6 2.7541 0.3544 6.3383 15 8 2.5060 -0.0757 7.6024 16 6 2.8445 -1.3477 7.8937 17 1 3.2147 -1.9995 7.1161 18 6 2.7174 -1.8191 9.1911 19 7 2.2667 -1.0249 10.1384 20 14 3.1791 -3.5839 9.5932 21 1 1.9919 -4.4585 9.4172 22 1 4.2631 -4.0318 8.6822 23 1 3.6494 -3.6646 10.9994 24 6 2.5326 1.6785 5.9913 25 7 2.7757 2.1048 4.7667 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.5494 2.2103 -1.3525 32 1 2.0783 3.1216 -1.3490 33 1 1.9896 1.5353 -2.1517 34 1 3.9368 2.4635 0.0206 35 1 3.9946 0.8182 -0.6563 36 1 5.7737 0.4150 2.5627 37 1 5.8617 0.1436 0.8060 38 1 5.9183 1.8003 1.4542 39 1 3.2971 2.7213 2.3481 40 1 3.8365 -0.7092 3.3255 41 1 3.4066 -1.5694 5.6130 42 1 2.0272 -0.1084 9.9298 43 1 2.1608 2.3697 6.7332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168692910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:30 Heat of formation + Delta-G solvation = -35.329960 kcal Electronic energy + Delta-G solvation = -21661.062838 eV Core-core repulsion = 18512.319658 eV Total energy + Delta-G solvation = -3148.743180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40557 -39.65815 -38.57937 -36.17359 -34.31150 -32.97235 -32.50268 -30.76064 -29.14342 -27.70523 -26.82248 -24.69865 -24.43556 -23.42680 -21.92592 -20.55380 -20.38806 -19.13874 -17.87257 -17.68553 -16.33944 -16.05883 -16.02218 -15.88265 -15.56967 -15.44738 -15.06051 -14.65934 -14.57826 -14.27840 -13.99081 -13.74145 -13.63770 -13.18056 -12.93795 -12.82869 -12.60874 -12.55896 -12.46403 -12.23570 -12.03472 -11.91396 -11.71331 -11.48859 -11.30571 -11.10818 -10.94570 -10.65103 -10.42519 -10.31980 -8.89860 -8.29235 -6.16422 0.29561 0.67993 1.50543 1.64068 1.78871 2.28638 2.41254 2.90136 3.16144 3.37207 3.69375 3.79532 3.89095 3.99155 4.02840 4.18650 4.24686 4.29518 4.36621 4.43262 4.63066 4.69133 4.74259 4.80289 4.82941 4.86225 4.92838 4.95136 5.00920 5.08671 5.15055 5.22735 5.24444 5.28895 5.33560 5.38079 5.48302 5.52348 5.55731 5.59433 6.22590 6.30108 6.74693 6.90964 7.29990 7.67837 8.56042 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.003619 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.950859 B = 7736.002473 C = 7895.359020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.092 4.092 4 H 0.053 0.947 5 C -0.144 4.144 6 C -0.111 4.111 7 C 0.150 3.850 8 H 0.076 0.924 9 C -0.167 4.167 10 N -0.715 5.715 11 C 0.338 3.662 12 C -0.182 4.182 13 C -0.146 4.146 14 C 0.023 3.977 15 O -0.249 6.249 16 C -0.484 4.484 17 H 0.090 0.910 18 C -0.046 4.046 19 N -0.921 5.921 20 Si 1.146 2.854 21 H -0.265 1.265 22 H -0.258 1.258 23 H -0.275 1.275 24 C 0.066 3.934 25 N -0.516 5.516 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.401 0.599 40 H 0.152 0.848 41 H 0.134 0.866 42 H 0.261 0.739 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 1.455 -24.802 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.072 0.928 5 C -0.201 4.201 6 C -0.149 4.149 7 C 0.045 3.955 8 H 0.094 0.906 9 C -0.226 4.226 10 N -0.352 5.352 11 C 0.102 3.898 12 C -0.206 4.206 13 C -0.173 4.173 14 C -0.030 4.030 15 O -0.157 6.157 16 C -0.561 4.561 17 H 0.107 0.893 18 C -0.242 4.242 19 N -0.556 5.556 20 Si 0.963 3.037 21 H -0.190 1.190 22 H -0.182 1.182 23 H -0.200 1.200 24 C -0.091 4.091 25 N -0.234 5.234 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.237 0.763 40 H 0.170 0.830 41 H 0.152 0.848 42 H 0.069 0.931 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.086 1.175 -23.675 23.904 hybrid contribution -0.248 0.893 -0.489 1.048 sum 2.838 2.068 -24.164 24.418 Atomic orbital electron populations 1.21803 0.96447 1.01460 1.01384 1.21626 0.95637 0.96623 1.01867 1.21130 0.95418 0.96121 0.98396 0.92845 1.21837 1.01199 1.00442 0.96604 1.21885 0.95415 1.02655 0.94933 1.21132 0.93662 0.93920 0.86751 0.90578 1.22293 0.95607 1.02731 1.01964 1.44311 1.73326 1.12470 1.05121 1.18350 0.95146 0.89059 0.87226 1.21405 1.07048 0.95328 0.96812 1.21573 1.01902 1.00536 0.93302 1.20474 1.00778 0.95249 0.86484 1.83651 1.75278 1.31303 1.25448 1.22549 1.48801 0.86107 0.98596 0.89289 1.28318 0.95257 1.10887 0.89719 1.70682 1.41307 1.08273 1.35352 0.82551 0.77646 0.66625 0.76924 1.19018 1.18236 1.20009 1.21532 1.03037 0.91371 0.93162 1.67060 1.18138 1.37573 1.00597 0.91623 0.92851 0.94599 0.90636 0.93185 0.92951 0.92400 0.91725 0.90582 0.88504 0.94231 0.89649 0.92155 0.76347 0.83031 0.84791 0.93088 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.67 71.98 0.70 -2.02 16 2 C -0.12 -1.97 5.28 30.59 0.16 -1.81 16 3 C -0.09 -1.42 2.33 -10.79 -0.03 -1.44 16 4 H 0.05 1.08 7.54 -2.38 -0.02 1.06 16 5 C -0.14 -1.78 8.81 71.98 0.63 -1.15 16 6 C -0.11 -1.46 4.22 30.60 0.13 -1.33 16 7 C 0.15 2.76 2.13 44.99 0.10 2.85 16 8 H 0.08 1.50 4.64 -2.39 -0.01 1.49 16 9 C -0.17 -2.88 9.41 71.98 0.68 -2.20 16 10 N -0.72 -18.00 4.56 -324.43 -1.48 -19.48 16 11 C 0.34 11.74 7.63 133.04 1.02 12.76 16 12 C -0.18 -6.43 8.83 22.49 0.20 -6.23 16 13 C -0.15 -6.38 9.25 22.56 0.21 -6.17 16 14 C 0.02 1.14 6.67 22.67 0.15 1.29 16 15 O -0.25 -14.82 9.17 -23.24 -0.21 -15.03 16 16 C -0.48 -28.23 9.50 67.91 0.64 -27.59 16 17 H 0.09 4.79 5.25 -2.91 -0.02 4.77 16 18 C -0.05 -2.65 5.49 84.82 0.47 -2.18 16 19 N -0.92 -57.93 13.70 21.61 0.30 -57.63 16 20 Si 1.15 48.15 29.92 68.60 2.05 50.20 16 21 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 23 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 24 C 0.07 2.98 11.14 84.78 0.94 3.92 16 25 N -0.52 -20.73 10.39 -192.67 -2.00 -22.73 16 26 H 0.06 0.98 6.69 -2.39 -0.02 0.97 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.05 0.97 6.31 -2.39 -0.02 0.96 16 31 H 0.05 0.69 6.83 -2.39 -0.02 0.67 16 32 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.04 0.86 7.66 -2.39 -0.02 0.84 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.40 9.50 8.71 -92.71 -0.81 8.69 16 40 H 0.15 4.29 6.06 -2.91 -0.02 4.27 16 41 H 0.13 5.82 5.75 -2.91 -0.02 5.80 16 42 H 0.26 17.09 7.97 -92.71 -0.74 16.35 16 43 H 0.15 6.52 8.06 -2.91 -0.02 6.50 16 Total: -1.00 -69.98 344.15 4.88 -65.10 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.23 Total: 30.86 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 6.00 Total: -31.30 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -3.18 Total: -99.83 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.21 Total: -15.03 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.05 Total: 50.20 kcal Total: -69.98 4.88 -65.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168692910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.769 kcal (2) G-P(sol) polarization free energy of solvation -69.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds