Wall clock time and date at job start Tue Mar 31 2020 00:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47125 * 2 1 4 4 H 1.08994 * 109.47068 * 55.00066 * 3 2 1 5 5 C 1.53004 * 109.47290 * 294.99900 * 3 2 1 6 6 C 1.53007 * 109.47149 * 174.99995 * 3 2 1 7 7 C 1.52998 * 109.47046 * 185.00080 * 6 3 2 8 8 H 1.08999 * 109.46910 * 305.00016 * 7 6 3 9 9 C 1.53005 * 109.46853 * 185.00036 * 7 6 3 10 10 N 1.46501 * 109.47246 * 65.00310 * 7 6 3 11 11 C 1.39122 * 120.00198 * 205.00154 * 10 7 6 12 12 C 1.39174 * 119.62944 * 359.97438 * 11 10 7 13 13 C 1.38197 * 119.17007 * 180.02562 * 12 11 10 14 14 C 1.39454 * 118.45169 * 359.97438 * 13 12 11 15 15 O 1.35818 * 120.40591 * 179.97438 * 14 13 12 16 16 C 1.34813 * 116.99829 * 5.47607 * 15 14 13 17 17 H 1.08000 * 120.00025 * 354.94181 * 16 15 14 18 18 C 1.38633 * 119.99987 * 174.94302 * 16 15 14 19 19 N 1.31579 * 119.99724 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99950 * 179.72231 * 18 16 15 21 21 H 1.48494 * 109.47270 * 270.27400 * 20 18 16 22 22 H 1.48496 * 109.47111 * 30.28045 * 20 18 16 23 23 H 1.48499 * 109.46811 * 150.27668 * 20 18 16 24 24 C 1.38669 * 119.18970 * 0.25307 * 14 13 12 25 25 N 1.31932 * 120.75379 * 359.47526 * 24 14 13 26 26 H 1.08999 * 109.47054 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47201 * 300.00088 * 1 2 3 28 28 H 1.09003 * 109.47211 * 59.99843 * 1 2 3 29 29 H 1.09005 * 109.47210 * 240.00240 * 2 1 3 30 30 H 1.08995 * 109.47451 * 120.00050 * 2 1 3 31 31 H 1.08994 * 109.47201 * 300.00085 * 5 3 2 32 32 H 1.08998 * 109.46617 * 59.99991 * 5 3 2 33 33 H 1.08999 * 109.46898 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.46709 * 65.00086 * 6 3 2 35 35 H 1.08998 * 109.46683 * 305.00377 * 6 3 2 36 36 H 1.08994 * 109.46908 * 299.99872 * 9 7 6 37 37 H 1.09000 * 109.46739 * 60.00103 * 9 7 6 38 38 H 1.08997 * 109.46705 * 179.97438 * 9 7 6 39 39 H 0.97001 * 119.99620 * 24.99403 * 10 7 6 40 40 H 1.08001 * 120.41316 * 359.97438 * 12 11 10 41 41 H 1.08006 * 120.77774 * 179.97438 * 13 12 11 42 42 H 0.97001 * 120.00238 * 359.72533 * 19 18 16 43 43 H 1.07998 * 119.61935 * 179.74876 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5649 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 1 3.6971 3.4715 -0.5909 9 6 5.5945 2.8959 0.2515 10 7 3.5718 3.4655 1.5027 11 6 3.4290 4.8443 1.6212 12 6 3.7569 5.6650 0.5461 13 6 3.6119 7.0333 0.6743 14 6 3.1389 7.5408 1.8841 15 8 2.9818 8.8791 2.0536 16 6 3.1923 9.6614 0.9760 17 1 3.5514 9.2266 0.0550 18 6 2.9480 11.0240 1.0503 19 7 2.5110 11.5538 2.1726 20 14 3.2471 12.1092 -0.4405 21 1 4.6467 12.6049 -0.4190 22 1 3.0195 11.3224 -1.6791 23 1 2.3128 13.2629 -0.4083 24 6 2.8366 6.6627 2.9138 25 7 2.9821 5.3610 2.7551 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0698 1.5876 -2.1491 32 1 0.5489 2.1252 -1.3969 33 1 1.9982 3.1543 -1.3071 34 1 4.0029 0.9836 -0.7596 35 1 3.8570 0.8800 1.0113 36 1 5.9618 2.3093 1.0935 37 1 5.9611 2.4639 -0.6798 38 1 5.9504 3.9223 0.3403 39 1 3.3451 2.8885 2.2488 40 1 4.1210 5.2378 -0.3767 41 1 3.8591 7.6943 -0.1433 42 1 2.3560 10.9904 2.9469 43 1 2.4737 7.0484 3.8550 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168692912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:34 Heat of formation + Delta-G solvation = -17.716770 kcal Electronic energy + Delta-G solvation = -21538.629334 eV Core-core repulsion = 18390.649920 eV Total energy + Delta-G solvation = -3147.979415 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.76574 -38.35352 -37.09871 -35.18014 -32.36544 -31.37964 -31.26540 -29.71446 -27.60696 -26.92936 -24.87481 -24.06074 -22.99157 -21.75630 -20.59664 -19.83667 -18.47916 -17.52861 -16.22352 -16.10882 -15.32136 -15.17220 -14.73461 -14.26637 -14.08269 -13.86184 -13.75800 -13.61731 -13.22441 -12.98354 -12.63322 -12.50334 -12.33773 -12.18886 -12.15895 -11.90685 -11.69663 -11.48295 -11.15727 -10.89916 -10.72373 -10.63808 -10.50288 -10.35308 -10.31536 -9.74495 -9.33728 -8.98855 -8.74945 -8.50228 -6.74149 -6.67733 -4.00174 1.98830 2.38883 3.24435 3.30992 3.43986 3.59681 4.14310 4.43676 4.63846 4.70208 4.73273 5.02828 5.08397 5.12803 5.18413 5.24001 5.28044 5.38534 5.42382 5.42910 5.53861 5.58894 5.65422 5.71153 5.78153 5.80174 5.84800 5.89181 5.90174 5.95531 5.99028 6.03278 6.24128 6.29308 6.29870 6.48323 6.72217 7.08986 7.13714 7.47876 7.66336 8.12753 8.43474 8.87136 8.97319 9.65418 10.71696 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.003442 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.743127 B = 8133.297310 C = 8214.825217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.093 4.093 4 H 0.076 0.924 5 C -0.150 4.150 6 C -0.120 4.120 7 C 0.157 3.843 8 H 0.079 0.921 9 C -0.170 4.170 10 N -0.731 5.731 11 C 0.317 3.683 12 C -0.186 4.186 13 C -0.150 4.150 14 C 0.066 3.934 15 O -0.204 6.204 16 C -0.471 4.471 17 H 0.080 0.920 18 C 0.009 3.991 19 N -0.884 5.884 20 Si 1.098 2.902 21 H -0.281 1.281 22 H -0.284 1.284 23 H -0.276 1.276 24 C 0.065 3.935 25 N -0.503 5.503 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.394 0.606 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.282 0.718 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -20.295 -6.806 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.112 4.112 4 H 0.095 0.905 5 C -0.207 4.207 6 C -0.158 4.158 7 C 0.050 3.950 8 H 0.097 0.903 9 C -0.229 4.229 10 N -0.370 5.370 11 C 0.084 3.916 12 C -0.210 4.210 13 C -0.178 4.178 14 C 0.011 3.989 15 O -0.108 6.108 16 C -0.547 4.547 17 H 0.097 0.903 18 C -0.196 4.196 19 N -0.517 5.517 20 Si 0.922 3.078 21 H -0.208 1.208 22 H -0.209 1.209 23 H -0.201 1.201 24 C -0.093 4.093 25 N -0.220 5.220 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.229 0.771 40 H 0.135 0.865 41 H 0.154 0.846 42 H 0.092 0.908 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.916 -19.065 -6.651 20.213 hybrid contribution 0.339 -1.329 -0.014 1.372 sum 1.255 -20.394 -6.665 21.493 Atomic orbital electron populations 1.21823 0.96012 1.01248 1.02107 1.21570 0.95902 0.96503 1.01602 1.21168 0.95041 0.95840 0.99118 0.90527 1.21920 1.01321 1.00751 0.96716 1.21914 0.95658 0.95821 1.02365 1.20827 0.92950 0.93653 0.87529 0.90336 1.22330 0.96525 1.02592 1.01491 1.44042 1.75089 1.02333 1.15522 1.17933 0.98354 0.84987 0.90311 1.21136 1.07786 0.93324 0.98778 1.21422 1.02866 0.94737 0.98728 1.20087 0.98379 0.85978 0.94460 1.83677 1.78674 1.11424 1.37044 1.22141 1.49907 0.91452 0.91226 0.90296 1.26469 0.95288 0.93666 1.04174 1.70544 1.39087 1.39538 1.02536 0.83065 0.77202 0.75343 0.72167 1.20778 1.20933 1.20079 1.21409 1.03396 0.86123 0.98400 1.66926 1.17827 1.13735 1.23465 0.93104 0.92705 0.92502 0.92264 0.92231 0.92984 0.92649 0.92313 0.90824 0.91583 0.92577 0.92295 0.92119 0.77147 0.86483 0.84646 0.90763 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.67 37.16 0.36 -0.89 16 2 C -0.12 -0.94 5.40 -26.73 -0.14 -1.09 16 3 C -0.09 -0.86 2.33 -90.61 -0.21 -1.07 16 4 H 0.08 0.86 7.62 -51.93 -0.40 0.47 16 5 C -0.15 -1.44 8.71 37.16 0.32 -1.11 16 6 C -0.12 -1.04 4.22 -26.73 -0.11 -1.15 16 7 C 0.16 1.73 2.12 -67.93 -0.14 1.59 16 8 H 0.08 0.93 4.65 -51.93 -0.24 0.69 16 9 C -0.17 -1.80 9.40 37.16 0.35 -1.45 16 10 N -0.73 -10.22 4.62 -53.89 -0.25 -10.47 16 11 C 0.32 5.79 7.63 -154.91 -1.18 4.60 16 12 C -0.19 -3.46 8.83 -39.25 -0.35 -3.81 16 13 C -0.15 -3.29 9.25 -39.14 -0.36 -3.65 16 14 C 0.07 1.60 6.67 -38.97 -0.26 1.34 16 15 O -0.20 -5.74 9.17 -0.11 0.00 -5.74 16 16 C -0.47 -13.24 9.50 30.88 0.29 -12.95 16 17 H 0.08 2.08 5.25 -52.49 -0.28 1.81 16 18 C 0.01 0.25 5.49 -17.51 -0.10 0.16 16 19 N -0.88 -26.52 13.70 55.48 0.76 -25.76 16 20 Si 1.10 23.80 29.92 -169.99 -5.09 18.72 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 24 C 0.07 1.44 11.14 -17.35 -0.19 1.25 16 25 N -0.50 -10.25 10.38 -12.25 -0.13 -10.38 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 33 H 0.06 0.64 6.46 -51.93 -0.34 0.31 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.76 7.65 -51.93 -0.40 0.36 16 39 H 0.39 5.23 8.73 -40.82 -0.36 4.87 16 40 H 0.12 1.85 6.06 -52.49 -0.32 1.53 16 41 H 0.14 2.94 5.76 -52.48 -0.30 2.64 16 42 H 0.28 8.64 7.97 -40.82 -0.33 8.32 16 43 H 0.15 3.04 8.06 -52.49 -0.42 2.61 16 LS Contribution 344.09 15.07 5.19 5.19 Total: -1.00 -30.58 344.09 -7.90 -38.48 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.65 Total: 8.21 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -1.73 Total: -18.24 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.38 Total: -46.61 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: 0.00 Total: -5.74 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.09 Total: 18.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.58 -7.90 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168692912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.764 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds