Wall clock time and date at job start Tue Mar 31 2020 00:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47125 * 2 1 4 4 H 1.08994 * 109.47068 * 55.00066 * 3 2 1 5 5 C 1.53004 * 109.47290 * 294.99900 * 3 2 1 6 6 C 1.53007 * 109.47149 * 174.99995 * 3 2 1 7 7 C 1.52998 * 109.47046 * 185.00080 * 6 3 2 8 8 H 1.08999 * 109.46910 * 305.00016 * 7 6 3 9 9 C 1.53005 * 109.46853 * 185.00036 * 7 6 3 10 10 N 1.46501 * 109.47246 * 65.00310 * 7 6 3 11 11 C 1.39122 * 120.00198 * 205.00154 * 10 7 6 12 12 C 1.39174 * 119.62944 * 359.97438 * 11 10 7 13 13 C 1.38197 * 119.17007 * 180.02562 * 12 11 10 14 14 C 1.39454 * 118.45169 * 359.97438 * 13 12 11 15 15 O 1.35818 * 120.40591 * 179.97438 * 14 13 12 16 16 C 1.34813 * 116.99829 * 5.47607 * 15 14 13 17 17 H 1.08000 * 120.00025 * 354.94181 * 16 15 14 18 18 C 1.38633 * 119.99987 * 174.94302 * 16 15 14 19 19 N 1.31579 * 119.99724 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99950 * 179.72231 * 18 16 15 21 21 H 1.48494 * 109.47270 * 270.27400 * 20 18 16 22 22 H 1.48496 * 109.47111 * 30.28045 * 20 18 16 23 23 H 1.48499 * 109.46811 * 150.27668 * 20 18 16 24 24 C 1.38669 * 119.18970 * 0.25307 * 14 13 12 25 25 N 1.31932 * 120.75379 * 359.47526 * 24 14 13 26 26 H 1.08999 * 109.47054 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47201 * 300.00088 * 1 2 3 28 28 H 1.09003 * 109.47211 * 59.99843 * 1 2 3 29 29 H 1.09005 * 109.47210 * 240.00240 * 2 1 3 30 30 H 1.08995 * 109.47451 * 120.00050 * 2 1 3 31 31 H 1.08994 * 109.47201 * 300.00085 * 5 3 2 32 32 H 1.08998 * 109.46617 * 59.99991 * 5 3 2 33 33 H 1.08999 * 109.46898 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.46709 * 65.00086 * 6 3 2 35 35 H 1.08998 * 109.46683 * 305.00377 * 6 3 2 36 36 H 1.08994 * 109.46908 * 299.99872 * 9 7 6 37 37 H 1.09000 * 109.46739 * 60.00103 * 9 7 6 38 38 H 1.08997 * 109.46705 * 179.97438 * 9 7 6 39 39 H 0.97001 * 119.99620 * 24.99403 * 10 7 6 40 40 H 1.08001 * 120.41316 * 359.97438 * 12 11 10 41 41 H 1.08006 * 120.77774 * 179.97438 * 13 12 11 42 42 H 0.97001 * 120.00238 * 359.72533 * 19 18 16 43 43 H 1.07998 * 119.61935 * 179.74876 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5649 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 1 3.6971 3.4715 -0.5909 9 6 5.5945 2.8959 0.2515 10 7 3.5718 3.4655 1.5027 11 6 3.4290 4.8443 1.6212 12 6 3.7569 5.6650 0.5461 13 6 3.6119 7.0333 0.6743 14 6 3.1389 7.5408 1.8841 15 8 2.9818 8.8791 2.0536 16 6 3.1923 9.6614 0.9760 17 1 3.5514 9.2266 0.0550 18 6 2.9480 11.0240 1.0503 19 7 2.5110 11.5538 2.1726 20 14 3.2471 12.1092 -0.4405 21 1 4.6467 12.6049 -0.4190 22 1 3.0195 11.3224 -1.6791 23 1 2.3128 13.2629 -0.4083 24 6 2.8366 6.6627 2.9138 25 7 2.9821 5.3610 2.7551 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0698 1.5876 -2.1491 32 1 0.5489 2.1252 -1.3969 33 1 1.9982 3.1543 -1.3071 34 1 4.0029 0.9836 -0.7596 35 1 3.8570 0.8800 1.0113 36 1 5.9618 2.3093 1.0935 37 1 5.9611 2.4639 -0.6798 38 1 5.9504 3.9223 0.3403 39 1 3.3451 2.8885 2.2488 40 1 4.1210 5.2378 -0.3767 41 1 3.8591 7.6943 -0.1433 42 1 2.3560 10.9904 2.9469 43 1 2.4737 7.0484 3.8550 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168692912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:33 Heat of formation + Delta-G solvation = -35.415275 kcal Electronic energy + Delta-G solvation = -21539.396799 eV Core-core repulsion = 18390.649920 eV Total energy + Delta-G solvation = -3148.746880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40501 -39.64288 -38.56486 -36.23996 -34.31802 -32.97238 -32.58350 -30.51693 -29.14192 -27.74578 -26.82378 -24.91577 -24.55978 -23.34144 -21.59525 -20.64322 -20.38933 -19.14153 -17.87516 -17.68796 -16.34836 -16.14865 -15.96212 -15.83781 -15.59703 -15.41470 -15.31085 -14.67466 -14.43400 -14.26635 -13.99793 -13.63907 -13.54854 -13.33741 -12.96021 -12.83429 -12.64440 -12.57124 -12.40567 -12.21099 -11.93959 -11.91211 -11.71347 -11.47919 -11.34493 -11.14040 -10.94287 -10.64921 -10.43903 -10.31141 -8.89858 -8.29365 -6.16423 0.29523 0.67903 1.50597 1.64124 1.78903 2.28634 2.41261 2.90113 3.16123 3.37179 3.65500 3.77193 3.96225 3.99710 4.03737 4.20556 4.24084 4.30944 4.38923 4.45332 4.51186 4.68826 4.72546 4.80508 4.84010 4.91001 4.93656 4.97966 4.99373 5.09047 5.15082 5.23537 5.24545 5.28977 5.29665 5.41044 5.46900 5.51267 5.58387 5.59035 6.22572 6.30059 6.74655 6.90946 7.29945 7.67825 8.56065 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.003442 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.743127 B = 8133.297310 C = 8214.825217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.092 4.092 4 H 0.053 0.947 5 C -0.150 4.150 6 C -0.111 4.111 7 C 0.150 3.850 8 H 0.076 0.924 9 C -0.167 4.167 10 N -0.715 5.715 11 C 0.337 3.663 12 C -0.182 4.182 13 C -0.147 4.147 14 C 0.023 3.977 15 O -0.249 6.249 16 C -0.484 4.484 17 H 0.090 0.910 18 C -0.046 4.046 19 N -0.921 5.921 20 Si 1.147 2.853 21 H -0.265 1.265 22 H -0.258 1.258 23 H -0.275 1.275 24 C 0.066 3.934 25 N -0.516 5.516 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.401 0.599 40 H 0.152 0.848 41 H 0.135 0.865 42 H 0.261 0.739 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -23.470 -9.131 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.110 4.110 4 H 0.071 0.929 5 C -0.207 4.207 6 C -0.149 4.149 7 C 0.045 3.955 8 H 0.094 0.906 9 C -0.226 4.226 10 N -0.353 5.353 11 C 0.102 3.898 12 C -0.206 4.206 13 C -0.174 4.174 14 C -0.030 4.030 15 O -0.157 6.157 16 C -0.561 4.561 17 H 0.107 0.893 18 C -0.242 4.242 19 N -0.556 5.556 20 Si 0.963 3.037 21 H -0.190 1.190 22 H -0.182 1.182 23 H -0.200 1.200 24 C -0.091 4.091 25 N -0.234 5.234 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.237 0.763 40 H 0.170 0.830 41 H 0.152 0.848 42 H 0.069 0.931 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.072 -22.347 -8.978 24.173 hybrid contribution 0.013 -0.812 0.694 1.068 sum 2.085 -23.159 -8.285 24.685 Atomic orbital electron populations 1.21837 0.96381 1.01715 1.01447 1.21538 0.95569 0.95577 1.02468 1.21131 0.95484 0.96450 0.97970 0.92876 1.21920 1.01168 1.00044 0.97575 1.21879 0.95024 0.94024 1.03939 1.21135 0.93622 0.95058 0.85658 0.90567 1.22292 0.95469 1.01614 1.03192 1.44318 1.73398 1.00503 1.17039 1.18351 0.95225 0.86883 0.89367 1.21406 1.07014 0.91948 1.00225 1.21577 1.01828 0.96228 0.97719 1.20473 1.00920 0.85189 0.96375 1.83654 1.81291 1.13126 1.37594 1.22552 1.49626 0.92068 0.91807 0.89276 1.28319 0.94283 0.95442 1.06133 1.70683 1.42845 1.39077 1.03032 0.82550 0.77868 0.73828 0.69498 1.19019 1.18225 1.20020 1.21534 1.02728 0.86620 0.98212 1.67052 1.19139 1.12680 1.24507 0.92104 0.93830 0.92742 0.90998 0.91694 0.91324 0.93129 0.93900 0.88493 0.90609 0.92139 0.89658 0.94189 0.76346 0.83011 0.84766 0.93083 0.83084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.67 71.98 0.70 -1.51 16 2 C -0.11 -1.46 5.40 30.59 0.17 -1.30 16 3 C -0.09 -1.43 2.33 -10.79 -0.03 -1.46 16 4 H 0.05 1.08 7.62 -2.39 -0.02 1.07 16 5 C -0.15 -2.48 8.71 71.98 0.63 -1.85 16 6 C -0.11 -1.46 4.22 30.60 0.13 -1.33 16 7 C 0.15 2.76 2.12 44.99 0.10 2.86 16 8 H 0.08 1.51 4.65 -2.39 -0.01 1.50 16 9 C -0.17 -2.86 9.40 71.98 0.68 -2.18 16 10 N -0.72 -18.02 4.62 -324.41 -1.50 -19.52 16 11 C 0.34 11.73 7.63 133.04 1.02 12.74 16 12 C -0.18 -6.42 8.83 22.49 0.20 -6.22 16 13 C -0.15 -6.39 9.25 22.55 0.21 -6.18 16 14 C 0.02 1.15 6.67 22.67 0.15 1.30 16 15 O -0.25 -14.80 9.17 -23.31 -0.21 -15.01 16 16 C -0.48 -28.21 9.50 67.91 0.64 -27.56 16 17 H 0.09 4.79 5.25 -2.91 -0.02 4.77 16 18 C -0.05 -2.64 5.49 84.82 0.47 -2.18 16 19 N -0.92 -57.93 13.70 21.61 0.30 -57.63 16 20 Si 1.15 48.12 29.92 68.60 2.05 50.17 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 24 C 0.07 2.98 11.14 84.78 0.94 3.92 16 25 N -0.52 -20.73 10.38 -192.67 -2.00 -22.73 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.78 6.57 -2.39 -0.02 0.77 16 29 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.87 6.56 -2.39 -0.02 0.86 16 33 H 0.04 0.84 6.46 -2.39 -0.02 0.82 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.04 0.86 7.65 -2.39 -0.02 0.84 16 39 H 0.40 9.50 8.73 -92.71 -0.81 8.70 16 40 H 0.15 4.29 6.06 -2.91 -0.02 4.27 16 41 H 0.13 5.82 5.76 -2.91 -0.02 5.80 16 42 H 0.26 17.08 7.97 -92.71 -0.74 16.35 16 43 H 0.15 6.52 8.06 -2.91 -0.02 6.49 16 Total: -1.00 -69.90 344.09 4.86 -65.04 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.23 Total: 30.63 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 5.99 Total: -30.96 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -3.20 Total: -99.87 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.21 Total: -15.01 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.05 Total: 50.17 kcal Total: -69.90 4.86 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168692912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.622 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds