Wall clock time and date at job start Tue Mar 31 2020 00:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 H 1.09003 * 109.46892 * 304.99988 * 3 2 1 5 5 C 1.53001 * 109.47333 * 65.00132 * 3 2 1 6 6 C 1.53003 * 109.47194 * 185.00512 * 3 2 1 7 7 C 1.53007 * 109.47163 * 174.99975 * 6 3 2 8 8 H 1.08999 * 109.46987 * 54.99942 * 7 6 3 9 9 C 1.52995 * 109.46977 * 174.99908 * 7 6 3 10 10 N 1.46500 * 109.46802 * 294.99913 * 7 6 3 11 11 C 1.39125 * 119.99957 * 155.00211 * 10 7 6 12 12 C 1.39171 * 119.62920 * 359.97438 * 11 10 7 13 13 C 1.38202 * 119.17049 * 180.02562 * 12 11 10 14 14 C 1.39454 * 118.44861 * 0.24582 * 13 12 11 15 15 O 1.35817 * 120.40590 * 179.72598 * 14 13 12 16 16 C 1.34815 * 116.99702 * 354.53010 * 15 14 13 17 17 H 1.08003 * 120.00231 * 5.04981 * 16 15 14 18 18 C 1.38630 * 119.99867 * 185.05375 * 16 15 14 19 19 N 1.31575 * 119.99994 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47364 * 59.99972 * 20 18 16 22 22 H 1.48507 * 109.47075 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47459 * 299.99863 * 20 18 16 24 24 C 1.38664 * 119.19042 * 359.53174 * 14 13 12 25 25 N 1.31930 * 120.75861 * 0.47762 * 24 14 13 26 26 H 1.09006 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99804 * 1 2 3 28 28 H 1.08999 * 109.47424 * 59.99926 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00196 * 2 1 3 30 30 H 1.08999 * 109.47424 * 120.00074 * 2 1 3 31 31 H 1.08999 * 109.46837 * 59.99794 * 5 3 2 32 32 H 1.08996 * 109.47285 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.46869 * 300.00299 * 5 3 2 34 34 H 1.08998 * 109.47316 * 54.99946 * 6 3 2 35 35 H 1.09001 * 109.46743 * 294.99412 * 6 3 2 36 36 H 1.09000 * 109.47367 * 59.99647 * 9 7 6 37 37 H 1.09002 * 109.47207 * 180.02562 * 9 7 6 38 38 H 1.09007 * 109.47171 * 299.99509 * 9 7 6 39 39 H 0.97001 * 120.00323 * 334.99958 * 10 7 6 40 40 H 1.07998 * 120.41673 * 0.02562 * 12 11 10 41 41 H 1.08000 * 120.77903 * 179.97438 * 13 12 11 42 42 H 0.96999 * 120.00032 * 179.97438 * 19 18 16 43 43 H 1.08002 * 119.62171 * 180.22742 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1259 7 6 4.0644 2.8851 -0.2513 8 1 3.6971 3.4717 0.5908 9 6 5.5943 2.8961 -0.2517 10 7 3.5715 3.4657 -1.5028 11 6 3.4287 4.8445 -1.6212 12 6 3.7558 5.6650 -0.5458 13 6 3.6098 7.0333 -0.6736 14 6 3.1323 7.5405 -1.8817 15 8 2.9682 8.8783 -2.0488 16 6 3.1769 9.6598 -0.9703 17 1 3.5397 9.2253 -0.0505 18 6 2.9258 11.0213 -1.0419 19 7 2.4842 11.5508 -2.1625 20 14 3.2143 12.1041 0.4526 21 1 4.6416 12.0233 0.8544 22 1 2.8724 13.5102 0.1186 23 1 2.3575 11.6398 1.5732 24 6 2.8309 6.6625 -2.9118 25 7 2.9823 5.3613 -2.7553 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0699 1.5875 2.1491 32 1 1.9981 3.1543 1.3072 33 1 0.5489 2.1252 1.3969 34 1 3.8570 0.8801 -1.0115 35 1 4.0029 0.9837 0.7595 36 1 5.9617 2.3095 -1.0937 37 1 5.9503 3.9225 -0.3406 38 1 5.9610 2.4642 0.6796 39 1 3.3447 2.8887 -2.2489 40 1 4.1193 5.2378 0.3772 41 1 3.8556 7.6942 0.1445 42 1 2.3081 12.5034 -2.2125 43 1 2.4641 7.0479 -3.8516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168692914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:37 Heat of formation + Delta-G solvation = -11.257135 kcal Electronic energy + Delta-G solvation = -21505.201014 eV Core-core repulsion = 18357.501710 eV Total energy + Delta-G solvation = -3147.699304 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.68348 -38.28494 -36.97167 -35.11940 -32.33090 -31.35914 -31.20484 -29.68439 -27.61637 -26.91013 -25.19911 -24.03002 -22.99177 -21.69530 -20.54092 -19.79550 -18.12698 -17.47882 -16.26926 -15.90208 -15.28485 -15.12600 -14.54666 -14.45533 -14.14831 -13.95224 -13.58880 -13.33850 -13.11966 -12.92714 -12.57201 -12.31457 -12.27210 -12.13686 -12.09947 -11.81287 -11.64252 -11.51716 -11.38376 -11.11584 -10.99289 -10.69291 -10.60556 -10.51710 -10.32245 -9.62333 -9.29501 -8.93496 -8.70851 -8.50878 -6.60876 -6.39697 -3.96952 2.06778 2.46323 3.14718 3.16092 3.18592 3.65428 4.00401 4.46852 4.68390 4.73047 4.76582 5.05985 5.10919 5.14072 5.22334 5.31378 5.35015 5.42692 5.45772 5.49953 5.56796 5.63457 5.68307 5.74407 5.81639 5.84560 5.88500 5.91781 5.96740 6.01211 6.01916 6.09642 6.27681 6.32342 6.33212 6.56613 6.77009 7.14074 7.24732 7.29979 7.73758 8.01623 8.20269 8.95550 9.05667 9.75771 10.78329 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024045 B = 0.003435 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.209362 B = 8150.046754 C = 8237.785569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.093 4.093 4 H 0.077 0.923 5 C -0.150 4.150 6 C -0.120 4.120 7 C 0.157 3.843 8 H 0.079 0.921 9 C -0.170 4.170 10 N -0.732 5.732 11 C 0.314 3.686 12 C -0.186 4.186 13 C -0.155 4.155 14 C 0.063 3.937 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.087 0.913 18 C 0.039 3.961 19 N -0.865 5.865 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C 0.068 3.932 25 N -0.503 5.503 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.394 0.606 40 H 0.116 0.884 41 H 0.135 0.865 42 H 0.270 0.730 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 -19.546 6.725 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.112 4.112 4 H 0.095 0.905 5 C -0.207 4.207 6 C -0.158 4.158 7 C 0.051 3.949 8 H 0.096 0.904 9 C -0.229 4.229 10 N -0.371 5.371 11 C 0.082 3.918 12 C -0.210 4.210 13 C -0.182 4.182 14 C 0.008 3.992 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.104 0.896 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.764 3.236 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.091 4.091 25 N -0.220 5.220 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.228 0.772 40 H 0.134 0.866 41 H 0.152 0.848 42 H 0.079 0.921 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.873 -19.694 5.944 20.590 hybrid contribution 0.359 0.921 1.275 1.614 sum 1.233 -18.773 7.220 20.151 Atomic orbital electron populations 1.21825 0.96024 1.01225 1.02114 1.21571 0.95892 0.96536 1.01580 1.21168 0.95055 0.95806 0.99132 0.90483 1.21919 1.01302 1.00773 0.96704 1.21914 0.95645 0.95877 1.02321 1.20813 0.92909 0.93602 0.87598 0.90352 1.22332 0.96582 1.02595 1.01429 1.44031 1.75182 1.02383 1.15467 1.17924 0.98600 0.84930 0.90353 1.21114 1.07853 0.93372 0.98702 1.21404 1.03308 0.94742 0.98792 1.20238 0.97889 0.86746 0.94332 1.83995 1.77710 1.10443 1.36088 1.21177 1.45770 0.89017 0.90765 0.89567 1.25227 0.96580 0.96261 0.98429 1.70031 1.41786 1.12888 1.25317 0.85822 0.79009 0.78797 0.80021 1.19602 1.20309 1.19607 1.21440 1.03134 0.86014 0.98535 1.66934 1.17734 1.13867 1.23436 0.93132 0.92510 0.92684 0.92238 0.92293 0.93026 0.92276 0.92666 0.91603 0.90881 0.92604 0.92094 0.92366 0.77187 0.86615 0.84774 0.92060 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 37.16 0.36 -0.90 16 2 C -0.12 -0.95 5.40 -26.73 -0.14 -1.10 16 3 C -0.09 -0.87 2.33 -90.62 -0.21 -1.08 16 4 H 0.08 0.87 7.62 -51.93 -0.40 0.48 16 5 C -0.15 -1.44 8.71 37.16 0.32 -1.12 16 6 C -0.12 -1.05 4.22 -26.73 -0.11 -1.16 16 7 C 0.16 1.75 2.13 -67.93 -0.14 1.60 16 8 H 0.08 0.93 4.65 -51.93 -0.24 0.69 16 9 C -0.17 -1.81 9.41 37.15 0.35 -1.46 16 10 N -0.73 -10.29 4.62 -53.89 -0.25 -10.54 16 11 C 0.31 5.75 7.63 -154.91 -1.18 4.57 16 12 C -0.19 -3.45 8.83 -39.25 -0.35 -3.80 16 13 C -0.16 -3.36 9.25 -39.14 -0.36 -3.72 16 14 C 0.06 1.54 6.67 -38.97 -0.26 1.28 16 15 O -0.18 -5.09 9.77 -0.12 0.00 -5.09 16 16 C -0.39 -10.89 9.50 30.88 0.29 -10.59 16 17 H 0.09 2.21 5.25 -52.48 -0.28 1.93 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 20 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 C 0.07 1.50 11.14 -17.35 -0.19 1.31 16 25 N -0.50 -10.31 10.39 -12.25 -0.13 -10.43 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.65 6.46 -51.93 -0.34 0.31 16 33 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.76 7.66 -51.93 -0.40 0.37 16 38 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 39 H 0.39 5.27 8.73 -40.82 -0.36 4.91 16 40 H 0.12 1.82 6.06 -52.49 -0.32 1.50 16 41 H 0.13 2.84 5.76 -52.49 -0.30 2.54 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.15 3.13 8.06 -52.49 -0.42 2.71 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -30.34 344.65 -7.84 -38.18 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.67 Total: 7.06 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.73 Total: -15.20 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.38 Total: -45.64 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.00 Total: -5.09 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.34 -7.84 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168692914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.927 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds