Wall clock time and date at job start Tue Mar 31 2020 00:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 H 1.09003 * 109.46892 * 304.99988 * 3 2 1 5 5 C 1.53001 * 109.47333 * 65.00132 * 3 2 1 6 6 C 1.53003 * 109.47194 * 185.00512 * 3 2 1 7 7 C 1.53007 * 109.47163 * 174.99975 * 6 3 2 8 8 H 1.08999 * 109.46987 * 54.99942 * 7 6 3 9 9 C 1.52995 * 109.46977 * 174.99908 * 7 6 3 10 10 N 1.46500 * 109.46802 * 294.99913 * 7 6 3 11 11 C 1.39125 * 119.99957 * 155.00211 * 10 7 6 12 12 C 1.39171 * 119.62920 * 359.97438 * 11 10 7 13 13 C 1.38202 * 119.17049 * 180.02562 * 12 11 10 14 14 C 1.39454 * 118.44861 * 0.24582 * 13 12 11 15 15 O 1.35817 * 120.40590 * 179.72598 * 14 13 12 16 16 C 1.34815 * 116.99702 * 354.53010 * 15 14 13 17 17 H 1.08003 * 120.00231 * 5.04981 * 16 15 14 18 18 C 1.38630 * 119.99867 * 185.05375 * 16 15 14 19 19 N 1.31575 * 119.99994 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47364 * 59.99972 * 20 18 16 22 22 H 1.48507 * 109.47075 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47459 * 299.99863 * 20 18 16 24 24 C 1.38664 * 119.19042 * 359.53174 * 14 13 12 25 25 N 1.31930 * 120.75861 * 0.47762 * 24 14 13 26 26 H 1.09006 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99804 * 1 2 3 28 28 H 1.08999 * 109.47424 * 59.99926 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00196 * 2 1 3 30 30 H 1.08999 * 109.47424 * 120.00074 * 2 1 3 31 31 H 1.08999 * 109.46837 * 59.99794 * 5 3 2 32 32 H 1.08996 * 109.47285 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.46869 * 300.00299 * 5 3 2 34 34 H 1.08998 * 109.47316 * 54.99946 * 6 3 2 35 35 H 1.09001 * 109.46743 * 294.99412 * 6 3 2 36 36 H 1.09000 * 109.47367 * 59.99647 * 9 7 6 37 37 H 1.09002 * 109.47207 * 180.02562 * 9 7 6 38 38 H 1.09007 * 109.47171 * 299.99509 * 9 7 6 39 39 H 0.97001 * 120.00323 * 334.99958 * 10 7 6 40 40 H 1.07998 * 120.41673 * 0.02562 * 12 11 10 41 41 H 1.08000 * 120.77903 * 179.97438 * 13 12 11 42 42 H 0.96999 * 120.00032 * 179.97438 * 19 18 16 43 43 H 1.08002 * 119.62171 * 180.22742 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1259 7 6 4.0644 2.8851 -0.2513 8 1 3.6971 3.4717 0.5908 9 6 5.5943 2.8961 -0.2517 10 7 3.5715 3.4657 -1.5028 11 6 3.4287 4.8445 -1.6212 12 6 3.7558 5.6650 -0.5458 13 6 3.6098 7.0333 -0.6736 14 6 3.1323 7.5405 -1.8817 15 8 2.9682 8.8783 -2.0488 16 6 3.1769 9.6598 -0.9703 17 1 3.5397 9.2253 -0.0505 18 6 2.9258 11.0213 -1.0419 19 7 2.4842 11.5508 -2.1625 20 14 3.2143 12.1041 0.4526 21 1 4.6416 12.0233 0.8544 22 1 2.8724 13.5102 0.1186 23 1 2.3575 11.6398 1.5732 24 6 2.8309 6.6625 -2.9118 25 7 2.9823 5.3613 -2.7553 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0699 1.5875 2.1491 32 1 1.9981 3.1543 1.3072 33 1 0.5489 2.1252 1.3969 34 1 3.8570 0.8801 -1.0115 35 1 4.0029 0.9837 0.7595 36 1 5.9617 2.3095 -1.0937 37 1 5.9503 3.9225 -0.3406 38 1 5.9610 2.4642 0.6796 39 1 3.3447 2.8887 -2.2489 40 1 4.1193 5.2378 0.3772 41 1 3.8556 7.6942 0.1445 42 1 2.3081 12.5034 -2.2125 43 1 2.4641 7.0479 -3.8516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168692914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:36 Heat of formation + Delta-G solvation = -28.818837 kcal Electronic energy + Delta-G solvation = -21505.962547 eV Core-core repulsion = 18357.501710 eV Total energy + Delta-G solvation = -3148.460837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30422 -39.53348 -38.46120 -36.18235 -34.27382 -32.89443 -32.55014 -30.49353 -29.16806 -27.74294 -27.09150 -24.87439 -24.55648 -23.23858 -21.54673 -20.61401 -19.99034 -19.14398 -17.87370 -17.41410 -16.26028 -16.19413 -16.04609 -15.71932 -15.70184 -15.30112 -15.03959 -14.60232 -14.33921 -14.04896 -13.95909 -13.56517 -13.48856 -13.34081 -13.29050 -12.91663 -12.77780 -12.69431 -12.57438 -12.18719 -12.17498 -11.91468 -11.57018 -11.45262 -11.32305 -11.11301 -10.94562 -10.57114 -10.38215 -10.24955 -8.41762 -8.21009 -6.06662 0.38107 0.76575 1.37465 1.48244 1.53485 2.19702 2.39424 2.91222 3.22348 3.55527 3.69201 3.85195 3.99441 4.02548 4.10758 4.26478 4.31158 4.36227 4.44270 4.48410 4.53551 4.71028 4.74811 4.85321 4.89316 4.93805 4.96997 5.00128 5.02230 5.11588 5.16828 5.25258 5.26517 5.30205 5.31305 5.43585 5.52114 5.55199 5.60656 5.65668 6.02057 6.35118 6.81148 7.02303 7.37828 7.83841 8.81468 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024045 B = 0.003435 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.209362 B = 8150.046754 C = 8237.785569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.092 4.092 4 H 0.053 0.947 5 C -0.150 4.150 6 C -0.111 4.111 7 C 0.151 3.849 8 H 0.076 0.924 9 C -0.167 4.167 10 N -0.717 5.717 11 C 0.334 3.666 12 C -0.182 4.182 13 C -0.150 4.150 14 C 0.022 3.978 15 O -0.229 6.229 16 C -0.411 4.411 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.017 2.983 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.258 1.258 24 C 0.064 3.936 25 N -0.516 5.516 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.400 0.600 40 H 0.151 0.849 41 H 0.137 0.863 42 H 0.271 0.729 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 -22.416 9.183 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.110 4.110 4 H 0.071 0.929 5 C -0.207 4.207 6 C -0.149 4.149 7 C 0.046 3.954 8 H 0.094 0.906 9 C -0.226 4.226 10 N -0.354 5.354 11 C 0.098 3.902 12 C -0.206 4.206 13 C -0.177 4.177 14 C -0.031 4.031 15 O -0.135 6.135 16 C -0.488 4.488 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.836 3.164 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.093 4.093 25 N -0.234 5.234 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.236 0.764 40 H 0.169 0.831 41 H 0.154 0.846 42 H 0.080 0.920 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.008 -22.658 8.408 24.251 hybrid contribution 0.035 1.384 0.517 1.478 sum 2.044 -21.273 8.925 23.160 Atomic orbital electron populations 1.21838 0.96383 1.01695 1.01457 1.21538 0.95568 0.95611 1.02437 1.21130 0.95492 0.96416 0.97994 0.92851 1.21918 1.01150 1.00077 0.97542 1.21877 0.95021 0.94100 1.03868 1.21115 0.93569 0.94991 0.85737 0.90568 1.22292 0.95542 1.01625 1.03104 1.44296 1.73593 1.00568 1.16971 1.18341 0.95599 0.86819 0.89441 1.21392 1.07025 0.92059 1.00104 1.21569 1.02134 0.96188 0.97783 1.20589 1.00358 0.85917 0.96232 1.83958 1.80278 1.12258 1.37033 1.21725 1.45966 0.89725 0.91350 0.88232 1.26532 0.96085 0.97548 1.01931 1.70189 1.44445 1.13325 1.28157 0.84677 0.79642 0.76334 0.75753 1.18116 1.19877 1.18195 1.21512 1.02862 0.86590 0.98327 1.67040 1.19046 1.12808 1.24534 0.92126 0.92739 0.93816 0.91719 0.91026 0.91367 0.93841 0.93141 0.90668 0.88559 0.92205 0.94139 0.89737 0.76442 0.83128 0.84571 0.91969 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.67 71.98 0.70 -1.55 16 2 C -0.11 -1.49 5.40 30.59 0.17 -1.33 16 3 C -0.09 -1.46 2.33 -10.79 -0.03 -1.48 16 4 H 0.05 1.11 7.62 -2.39 -0.02 1.09 16 5 C -0.15 -2.50 8.71 71.98 0.63 -1.88 16 6 C -0.11 -1.50 4.22 30.60 0.13 -1.37 16 7 C 0.15 2.82 2.13 44.99 0.10 2.91 16 8 H 0.08 1.52 4.65 -2.39 -0.01 1.51 16 9 C -0.17 -2.90 9.41 71.98 0.68 -2.22 16 10 N -0.72 -18.32 4.62 -324.42 -1.50 -19.82 16 11 C 0.33 11.70 7.63 133.04 1.02 12.71 16 12 C -0.18 -6.42 8.83 22.49 0.20 -6.22 16 13 C -0.15 -6.48 9.25 22.55 0.21 -6.27 16 14 C 0.02 1.11 6.67 22.66 0.15 1.26 16 15 O -0.23 -13.76 9.77 -23.33 -0.23 -13.99 16 16 C -0.41 -23.78 9.50 67.91 0.64 -23.13 16 17 H 0.10 5.21 5.25 -2.91 -0.02 5.19 16 18 C -0.02 -1.35 5.49 84.82 0.47 -0.88 16 19 N -0.92 -56.83 13.67 21.61 0.30 -56.53 16 20 Si 1.02 42.63 29.55 68.60 2.03 44.66 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 24 C 0.06 2.94 11.14 84.78 0.94 3.88 16 25 N -0.52 -21.03 10.39 -192.67 -2.00 -23.03 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.80 6.56 -2.39 -0.02 0.78 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 0.85 6.46 -2.39 -0.02 0.84 16 33 H 0.05 0.88 6.56 -2.39 -0.02 0.87 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.04 0.88 7.66 -2.39 -0.02 0.86 16 38 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.40 9.67 8.73 -92.71 -0.81 8.86 16 40 H 0.15 4.25 6.06 -2.91 -0.02 4.23 16 41 H 0.14 5.75 5.76 -2.91 -0.02 5.74 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.15 6.63 8.06 -2.91 -0.02 6.61 16 Total: -1.00 -69.34 344.65 4.79 -64.55 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.20 Total: 29.73 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 5.99 Total: -25.56 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -3.20 Total: -99.38 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.23 Total: -13.99 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -69.34 4.79 -64.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168692914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.734 kcal (2) G-P(sol) polarization free energy of solvation -69.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds