Wall clock time and date at job start Tue Mar 31 2020 00:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35968 * 116.99610 * 2 1 4 4 C 1.39420 * 119.82173 * 0.02562 * 3 2 1 5 5 C 1.38089 * 120.56611 * 179.72010 * 4 3 2 6 6 C 1.38724 * 120.20623 * 0.51943 * 5 4 3 7 7 N 1.38849 * 120.18408 * 179.76420 * 6 5 4 8 8 C 1.46905 * 110.99964 * 54.61598 * 7 6 5 9 9 C 1.46895 * 111.00372 * 290.65969 * 7 6 5 10 10 C 1.53005 * 109.46787 * 310.67746 * 9 7 6 11 11 C 1.53001 * 109.47121 * 70.67540 * 9 7 6 12 12 C 1.52998 * 109.47607 * 190.67944 * 9 7 6 13 13 N 1.46896 * 109.47199 * 59.99476 * 12 9 7 14 14 C 1.41549 * 119.63122 * 359.48613 * 6 5 4 15 15 C 1.41030 * 120.27216 * 180.27667 * 14 6 5 16 16 H 1.07995 * 120.00061 * 339.07381 * 15 14 6 17 17 C 1.39903 * 119.99719 * 159.08029 * 15 14 6 18 18 N 1.30893 * 119.99918 * 332.96724 * 17 15 14 19 19 Si 1.86797 * 120.00036 * 152.97145 * 17 15 14 20 20 H 1.48500 * 109.47178 * 94.98295 * 19 17 15 21 21 H 1.48499 * 109.46878 * 214.98095 * 19 17 15 22 22 H 1.48496 * 109.47111 * 334.97861 * 19 17 15 23 23 C 1.37841 * 119.81602 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47693 * 300.00234 * 1 2 3 25 25 H 1.09004 * 109.47326 * 59.99970 * 1 2 3 26 26 H 1.08997 * 109.46961 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.71382 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.89833 * 180.25451 * 5 4 3 29 29 H 1.08998 * 109.47045 * 59.99465 * 8 7 6 30 30 H 1.08999 * 109.46567 * 299.99667 * 8 7 6 31 31 H 1.09000 * 109.46922 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.47324 * 59.99939 * 10 9 7 33 33 H 1.09004 * 109.46858 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.47025 * 299.99508 * 10 9 7 35 35 H 1.09000 * 109.46919 * 49.52179 * 11 9 7 36 36 H 1.09000 * 109.46879 * 169.52613 * 11 9 7 37 37 H 1.09007 * 109.46926 * 289.52271 * 11 9 7 38 38 H 1.08994 * 109.47284 * 180.02562 * 12 9 7 39 39 H 1.09004 * 109.46323 * 299.99897 * 12 9 7 40 40 H 1.00898 * 111.00199 * 56.04927 * 13 12 9 41 41 H 1.00898 * 111.00010 * 180.02562 * 13 12 9 42 42 H 0.96997 * 120.00241 * 180.02562 * 18 17 15 43 43 H 1.07992 * 120.10875 * 0.03519 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2831 2.3784 0.0005 5 6 1.8939 3.6168 0.0064 6 6 3.2778 3.7125 0.0009 7 7 3.8915 4.9581 0.0018 8 6 3.4164 5.7782 1.1242 9 6 3.6848 5.6478 -1.2786 10 6 4.0338 4.7019 -2.4295 11 6 2.2208 6.0762 -1.3967 12 6 4.5846 6.8835 -1.3434 13 7 5.9903 6.4722 -1.2301 14 6 4.0609 2.5334 0.0003 15 6 5.4689 2.6150 0.0006 16 1 5.9575 3.5185 -0.3328 17 6 6.2325 1.5253 0.4328 18 7 5.7332 0.6775 1.2960 19 14 7.9647 1.2803 -0.2222 20 1 8.9403 1.8848 0.7203 21 1 8.2419 -0.1723 -0.3574 22 1 8.0889 1.9337 -1.5499 23 6 3.4229 1.2793 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2051 2.3130 0.0005 28 1 1.2923 4.5138 0.0109 29 1 3.6448 5.2753 2.0639 30 1 2.3389 5.9195 1.0403 31 1 3.9133 6.7481 1.1014 32 1 3.3928 3.8215 -2.3834 33 1 3.8801 5.2135 -3.3796 34 1 5.0769 4.3967 -2.3454 35 1 1.9193 6.5942 -0.4863 36 1 2.1054 6.7442 -2.2502 37 1 1.5946 5.1951 -1.5377 38 1 4.4309 7.3955 -2.2933 39 1 4.3359 7.5573 -0.5235 40 1 6.2280 5.7970 -1.9411 41 1 6.6051 7.2712 -1.2698 42 1 6.2628 -0.0778 1.5959 43 1 4.0100 0.3729 -0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170059154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:39 Heat of formation + Delta-G solvation = 5.579725 kcal Electronic energy + Delta-G solvation = -23329.636243 eV Core-core repulsion = 20182.667040 eV Total energy + Delta-G solvation = -3146.969203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -39.51412 -38.17941 -35.76211 -33.78728 -32.83895 -30.64036 -29.75043 -28.52897 -27.05192 -26.12004 -25.06328 -24.39777 -23.76917 -20.98681 -20.13022 -18.02231 -17.58907 -15.98131 -15.88540 -15.38498 -15.09752 -14.86871 -14.71073 -14.61086 -13.84348 -13.39947 -13.17255 -12.95714 -12.70710 -12.50138 -12.10919 -11.75373 -11.65074 -11.47215 -11.30642 -11.22010 -11.16005 -10.98747 -10.90653 -10.65613 -10.55140 -10.36891 -10.08506 -9.80346 -9.66943 -9.33821 -8.89894 -8.08064 -7.42103 -7.18183 -6.80246 -6.57518 -4.17434 2.84823 3.02127 3.15230 3.18755 3.33047 4.01339 4.40071 4.64762 4.79324 5.12273 5.34528 5.52340 5.65860 5.71423 5.72389 5.79873 5.83389 5.94672 5.96753 6.02865 6.11225 6.21384 6.23833 6.37901 6.44250 6.45236 6.46996 6.71386 6.75267 6.92909 7.01751 7.18014 7.31153 7.52569 7.62802 7.66044 7.81667 7.92367 8.00122 8.15456 8.20263 8.56059 8.70421 8.90382 9.01994 9.28203 10.19122 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.009926 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.931686 B = 2820.182827 C = 4750.346967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.332 6.332 3 C 0.132 3.868 4 C -0.329 4.329 5 C -0.088 4.088 6 C -0.055 4.055 7 N -0.439 5.439 8 C 0.036 3.964 9 C 0.114 3.886 10 C -0.137 4.137 11 C -0.190 4.190 12 C 0.082 3.918 13 N -0.828 5.828 14 C 0.159 3.841 15 C -0.419 4.419 16 H 0.103 0.897 17 C 0.077 3.923 18 N -0.771 5.771 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.258 1.258 23 C -0.209 4.209 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.014 0.986 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.014 0.986 39 H 0.064 0.936 40 H 0.341 0.659 41 H 0.326 0.674 42 H 0.280 0.720 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 6.559 -4.574 8.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.247 6.247 3 C 0.088 3.912 4 C -0.349 4.349 5 C -0.109 4.109 6 C -0.150 4.150 7 N -0.157 5.157 8 C -0.112 4.112 9 C 0.024 3.976 10 C -0.194 4.194 11 C -0.249 4.249 12 C -0.050 4.050 13 N -0.358 5.358 14 C 0.155 3.845 15 C -0.446 4.446 16 H 0.121 0.879 17 C -0.143 4.143 18 N -0.394 5.394 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.182 1.182 23 C -0.230 4.230 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.032 0.968 39 H 0.082 0.918 40 H 0.156 0.844 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.522 5.828 -3.639 7.319 hybrid contribution -0.501 0.489 -1.121 1.322 sum -3.023 6.318 -4.760 8.469 Atomic orbital electron populations 1.22705 0.81053 1.01578 1.00351 1.86011 1.19281 1.29413 1.89973 1.18927 0.92405 0.82264 0.97589 1.20170 0.96802 0.92505 1.25464 1.21017 0.94999 0.95397 0.99446 1.18311 0.89285 0.89588 1.17822 1.59035 1.56688 1.00438 0.99578 1.22365 0.96317 0.97222 0.95295 1.21039 0.91501 0.93091 0.91921 1.21824 1.03424 0.99343 0.94848 1.22783 0.99228 1.01884 1.00967 1.21763 0.89360 0.95875 0.97995 1.58462 1.02583 1.16983 1.57752 1.17065 0.92917 0.88155 0.86397 1.19673 0.90866 0.99446 1.34609 0.87890 1.26108 1.00661 0.94896 0.92680 1.69963 1.38513 1.11197 1.19739 0.86432 0.82214 0.78016 0.80881 1.19620 1.20399 1.18195 1.20384 0.89322 0.98795 1.14470 0.93842 0.93918 0.90134 0.89405 0.89001 0.92040 0.96727 0.92757 0.91557 0.94385 0.91179 0.92531 0.93574 0.91072 0.96764 0.91753 0.84441 0.86250 0.90869 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.81 101.05 0.99 1.65 16 2 O -0.33 -7.55 10.49 -19.64 -0.21 -7.75 16 3 C 0.13 3.25 6.67 -39.29 -0.26 2.99 16 4 C -0.33 -7.51 9.03 -39.20 -0.35 -7.87 16 5 C -0.09 -1.96 7.31 -39.46 -0.29 -2.25 16 6 C -0.05 -1.27 2.97 -83.24 -0.25 -1.52 16 7 N -0.44 -8.91 3.57 -163.52 -0.58 -9.49 16 8 C 0.04 0.66 8.43 60.07 0.51 1.17 16 9 C 0.11 1.96 0.48 -131.60 -0.06 1.89 16 10 C -0.14 -2.44 7.68 37.16 0.29 -2.15 16 11 C -0.19 -3.00 6.96 37.16 0.26 -2.74 16 12 C 0.08 1.21 5.56 -3.83 -0.02 1.19 16 13 N -0.83 -12.41 9.43 -10.37 -0.10 -12.51 16 14 C 0.16 4.10 5.38 -106.65 -0.57 3.53 16 15 C -0.42 -10.72 8.67 -37.90 -0.33 -11.05 16 16 H 0.10 2.62 7.45 -52.49 -0.39 2.23 16 17 C 0.08 1.92 4.94 -17.33 -0.09 1.83 16 18 N -0.77 -19.99 11.32 55.55 0.63 -19.36 16 19 Si 0.90 18.64 29.64 -169.99 -5.04 13.60 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 C -0.21 -5.57 8.67 -38.80 -0.34 -5.90 16 24 H 0.04 0.71 7.65 -51.93 -0.40 0.31 16 25 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.09 1.81 6.26 -52.49 -0.33 1.48 16 28 H 0.09 1.86 4.97 -52.48 -0.26 1.60 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.01 0.26 5.05 -51.93 -0.26 0.00 16 31 H 0.05 0.91 6.33 -51.93 -0.33 0.58 16 32 H 0.07 1.36 6.89 -51.93 -0.36 1.00 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.31 6.44 -51.93 -0.33 0.97 16 35 H 0.06 0.87 5.78 -51.93 -0.30 0.57 16 36 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 37 H 0.07 1.24 5.52 -51.93 -0.29 0.95 16 38 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.06 0.94 6.49 -51.93 -0.34 0.61 16 40 H 0.34 5.15 7.03 -39.29 -0.28 4.87 16 41 H 0.33 4.00 9.08 -39.29 -0.36 3.65 16 42 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.12 3.32 6.25 -52.49 -0.33 2.99 16 LS Contribution 326.15 15.07 4.91 4.91 Total: -1.00 -28.08 326.15 -7.09 -35.17 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -6.19 Total: 14.66 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -0.52 Total: -19.22 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.05 Total: -41.37 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.21 Total: -7.75 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.04 Total: 13.60 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.08 -7.09 -35.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170059154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.746 kcal (2) G-P(sol) polarization free energy of solvation -28.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds