Wall clock time and date at job start Tue Mar 31 2020 00:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35968 * 116.99610 * 2 1 4 4 C 1.39420 * 119.82173 * 0.02562 * 3 2 1 5 5 C 1.38089 * 120.56611 * 179.72010 * 4 3 2 6 6 C 1.38724 * 120.20623 * 0.51943 * 5 4 3 7 7 N 1.38849 * 120.18408 * 179.76420 * 6 5 4 8 8 C 1.46905 * 110.99964 * 54.61598 * 7 6 5 9 9 C 1.46895 * 111.00372 * 290.65969 * 7 6 5 10 10 C 1.53005 * 109.46787 * 310.67746 * 9 7 6 11 11 C 1.53001 * 109.47121 * 70.67540 * 9 7 6 12 12 C 1.52998 * 109.47607 * 190.67944 * 9 7 6 13 13 N 1.46896 * 109.47199 * 59.99476 * 12 9 7 14 14 C 1.41549 * 119.63122 * 359.48613 * 6 5 4 15 15 C 1.41030 * 120.27216 * 180.27667 * 14 6 5 16 16 H 1.07995 * 120.00061 * 339.07381 * 15 14 6 17 17 C 1.39903 * 119.99719 * 159.08029 * 15 14 6 18 18 N 1.30893 * 119.99918 * 332.96724 * 17 15 14 19 19 Si 1.86797 * 120.00036 * 152.97145 * 17 15 14 20 20 H 1.48500 * 109.47178 * 94.98295 * 19 17 15 21 21 H 1.48499 * 109.46878 * 214.98095 * 19 17 15 22 22 H 1.48496 * 109.47111 * 334.97861 * 19 17 15 23 23 C 1.37841 * 119.81602 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47693 * 300.00234 * 1 2 3 25 25 H 1.09004 * 109.47326 * 59.99970 * 1 2 3 26 26 H 1.08997 * 109.46961 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.71382 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.89833 * 180.25451 * 5 4 3 29 29 H 1.08998 * 109.47045 * 59.99465 * 8 7 6 30 30 H 1.08999 * 109.46567 * 299.99667 * 8 7 6 31 31 H 1.09000 * 109.46922 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.47324 * 59.99939 * 10 9 7 33 33 H 1.09004 * 109.46858 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.47025 * 299.99508 * 10 9 7 35 35 H 1.09000 * 109.46919 * 49.52179 * 11 9 7 36 36 H 1.09000 * 109.46879 * 169.52613 * 11 9 7 37 37 H 1.09007 * 109.46926 * 289.52271 * 11 9 7 38 38 H 1.08994 * 109.47284 * 180.02562 * 12 9 7 39 39 H 1.09004 * 109.46323 * 299.99897 * 12 9 7 40 40 H 1.00898 * 111.00199 * 56.04927 * 13 12 9 41 41 H 1.00898 * 111.00010 * 180.02562 * 13 12 9 42 42 H 0.96997 * 120.00241 * 180.02562 * 18 17 15 43 43 H 1.07992 * 120.10875 * 0.03519 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2831 2.3784 0.0005 5 6 1.8939 3.6168 0.0064 6 6 3.2778 3.7125 0.0009 7 7 3.8915 4.9581 0.0018 8 6 3.4164 5.7782 1.1242 9 6 3.6848 5.6478 -1.2786 10 6 4.0338 4.7019 -2.4295 11 6 2.2208 6.0762 -1.3967 12 6 4.5846 6.8835 -1.3434 13 7 5.9903 6.4722 -1.2301 14 6 4.0609 2.5334 0.0003 15 6 5.4689 2.6150 0.0006 16 1 5.9575 3.5185 -0.3328 17 6 6.2325 1.5253 0.4328 18 7 5.7332 0.6775 1.2960 19 14 7.9647 1.2803 -0.2222 20 1 8.9403 1.8848 0.7203 21 1 8.2419 -0.1723 -0.3574 22 1 8.0889 1.9337 -1.5499 23 6 3.4229 1.2793 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2051 2.3130 0.0005 28 1 1.2923 4.5138 0.0109 29 1 3.6448 5.2753 2.0639 30 1 2.3389 5.9195 1.0403 31 1 3.9133 6.7481 1.1014 32 1 3.3928 3.8215 -2.3834 33 1 3.8801 5.2135 -3.3796 34 1 5.0769 4.3967 -2.3454 35 1 1.9193 6.5942 -0.4863 36 1 2.1054 6.7442 -2.2502 37 1 1.5946 5.1951 -1.5377 38 1 4.4309 7.3955 -2.2933 39 1 4.3359 7.5573 -0.5235 40 1 6.2280 5.7970 -1.9411 41 1 6.6051 7.2712 -1.2698 42 1 6.2628 -0.0778 1.5959 43 1 4.0100 0.3729 -0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170059154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:37 Heat of formation + Delta-G solvation = -13.244609 kcal Electronic energy + Delta-G solvation = -23330.452527 eV Core-core repulsion = 20182.667040 eV Total energy + Delta-G solvation = -3147.785487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11881 -39.82401 -37.42211 -35.47219 -34.38853 -32.02153 -31.56596 -30.18573 -28.50538 -27.61763 -26.84927 -25.77074 -25.22396 -22.81462 -21.81074 -19.57188 -19.31748 -17.81243 -17.24194 -16.95983 -16.65560 -16.43363 -16.31528 -16.16021 -15.20742 -14.99910 -14.67843 -14.49301 -14.28332 -13.87243 -13.61945 -13.44966 -13.16398 -13.00941 -12.87994 -12.75123 -12.69812 -12.55268 -12.36822 -12.15352 -12.07612 -11.94852 -11.75379 -11.43767 -11.32155 -11.00441 -10.74118 -9.31770 -9.20189 -8.82679 -8.57546 -8.37507 -6.09954 1.05304 1.17401 1.43396 1.54213 1.63107 2.27400 2.75735 2.84002 3.37729 3.78929 3.92648 4.09556 4.23683 4.31941 4.41178 4.44863 4.49533 4.57038 4.64718 4.68886 4.72466 4.74839 4.79068 4.92377 5.02485 5.06963 5.08890 5.15082 5.25135 5.30139 5.37803 5.48848 5.58779 5.64845 5.86740 5.97178 6.12242 6.34402 6.48923 6.65450 6.74313 6.87882 6.92719 7.04920 7.13032 7.48552 8.36344 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.009926 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.931686 B = 2820.182827 C = 4750.346967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.124 3.876 4 C -0.329 4.329 5 C -0.092 4.092 6 C -0.043 4.043 7 N -0.457 5.457 8 C 0.039 3.961 9 C 0.111 3.889 10 C -0.130 4.130 11 C -0.184 4.184 12 C 0.087 3.913 13 N -0.844 5.844 14 C 0.135 3.865 15 C -0.440 4.440 16 H 0.099 0.901 17 C 0.037 3.963 18 N -0.810 5.810 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.252 1.252 23 C -0.246 4.246 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.036 0.964 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.339 0.661 41 H 0.342 0.658 42 H 0.285 0.715 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 8.597 -5.502 10.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.080 3.920 4 C -0.350 4.350 5 C -0.112 4.112 6 C -0.139 4.139 7 N -0.176 5.176 8 C -0.108 4.108 9 C 0.022 3.978 10 C -0.188 4.188 11 C -0.243 4.243 12 C -0.044 4.044 13 N -0.376 5.376 14 C 0.131 3.869 15 C -0.468 4.468 16 H 0.117 0.883 17 C -0.180 4.180 18 N -0.435 5.435 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.176 1.176 23 C -0.267 4.267 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.095 0.905 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.176 7.886 -4.569 9.651 hybrid contribution -0.449 -0.115 -0.843 0.962 sum -3.625 7.771 -5.412 10.140 Atomic orbital electron populations 1.23068 0.77949 1.04229 1.01179 1.85969 1.22527 1.28789 1.89796 1.19046 0.92179 0.83629 0.97132 1.20473 0.98035 0.92062 1.24412 1.21304 0.94981 0.96171 0.98714 1.18423 0.89574 0.90227 1.15653 1.58975 1.57085 0.99976 1.01553 1.22336 0.97303 0.97537 0.93643 1.21158 0.93302 0.93570 0.89741 1.21747 1.01679 0.98538 0.96797 1.22686 0.97457 1.01619 1.02516 1.21705 0.88650 0.94542 0.99487 1.58433 1.03209 1.17945 1.58011 1.17393 0.93651 0.88993 0.86876 1.19757 0.91225 0.99968 1.35837 0.88269 1.26892 1.04525 0.94299 0.92293 1.70023 1.40289 1.12048 1.21095 0.85391 0.77271 0.77946 0.80322 1.18988 1.20044 1.17578 1.20332 0.90428 0.98334 1.17596 0.93159 0.92736 0.86762 0.86893 0.86540 0.94468 0.95519 0.90521 0.94935 0.91576 0.92621 0.91770 0.90968 0.92870 0.94336 0.91154 0.84683 0.84493 0.90459 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.81 113.37 1.11 2.09 16 2 O -0.36 -16.35 10.49 -93.19 -0.98 -17.32 16 3 C 0.12 6.27 6.67 22.46 0.15 6.42 16 4 C -0.33 -14.86 9.03 22.52 0.20 -14.66 16 5 C -0.09 -3.99 7.31 22.35 0.16 -3.83 16 6 C -0.04 -2.02 2.97 38.96 0.12 -1.90 16 7 N -0.46 -18.17 3.57 -671.27 -2.40 -20.57 16 8 C 0.04 1.40 8.43 127.69 1.08 2.47 16 9 C 0.11 3.58 0.48 3.53 0.00 3.58 16 10 C -0.13 -4.51 7.68 71.98 0.55 -3.96 16 11 C -0.18 -5.23 6.96 71.98 0.50 -4.73 16 12 C 0.09 2.32 5.56 86.30 0.48 2.80 16 13 N -0.84 -23.57 9.43 -186.73 -1.76 -25.33 16 14 C 0.13 7.22 5.38 -21.18 -0.11 7.11 16 15 C -0.44 -23.37 8.67 23.36 0.20 -23.17 16 16 H 0.10 5.19 7.45 -2.91 -0.02 5.17 16 17 C 0.04 1.90 4.94 85.24 0.42 2.32 16 18 N -0.81 -44.02 11.32 21.82 0.25 -43.78 16 19 Si 0.97 39.26 29.64 68.60 2.03 41.29 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 23 C -0.25 -13.76 8.67 22.78 0.20 -13.56 16 24 H 0.05 1.54 7.65 -2.39 -0.02 1.53 16 25 H 0.05 1.62 7.65 -2.39 -0.02 1.60 16 26 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.11 4.43 6.26 -2.91 -0.02 4.41 16 28 H 0.12 4.45 4.97 -2.91 -0.01 4.44 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.03 0.88 5.05 -2.39 -0.01 0.87 16 31 H 0.08 2.37 6.33 -2.39 -0.02 2.36 16 32 H 0.03 1.32 6.89 -2.39 -0.02 1.31 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.05 2.07 6.44 -2.39 -0.02 2.06 16 35 H 0.06 1.73 5.78 -2.39 -0.01 1.71 16 36 H 0.07 1.68 8.11 -2.39 -0.02 1.66 16 37 H 0.05 1.71 5.52 -2.38 -0.01 1.70 16 38 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 1.79 6.49 -2.39 -0.02 1.78 16 40 H 0.34 9.75 7.03 -89.70 -0.63 9.12 16 41 H 0.34 7.55 9.08 -89.70 -0.81 6.74 16 42 H 0.28 14.14 8.30 -92.71 -0.77 13.38 16 43 H 0.09 5.44 6.25 -2.91 -0.02 5.42 16 Total: -1.00 -63.29 326.15 1.80 -61.49 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: -0.40 Total: 43.23 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 5.06 Total: -39.01 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -3.91 Total: -89.68 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.98 Total: -17.32 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -63.29 1.80 -61.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170059154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.245 kcal (2) G-P(sol) polarization free energy of solvation -63.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds