Wall clock time and date at job start Tue Mar 31 2020 00:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.39945 * 119.99710 * 2 1 4 4 C 1.38867 * 120.01504 * 185.63646 * 3 2 1 5 5 C 1.38113 * 119.97645 * 179.74739 * 4 3 2 6 6 C 1.38704 * 120.01791 * 0.50476 * 5 4 3 7 7 O 1.36005 * 119.97833 * 179.75099 * 6 5 4 8 8 C 1.42904 * 117.00034 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.46690 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00361 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99740 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00021 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99847 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47623 * 89.99985 * 13 11 9 15 15 H 1.48507 * 109.46980 * 210.00111 * 13 11 9 16 16 H 1.48505 * 109.47245 * 329.99773 * 13 11 9 17 17 C 1.38695 * 120.03787 * 359.76945 * 6 5 4 18 18 C 1.38108 * 120.02083 * 359.97438 * 17 6 5 19 19 C 1.46500 * 120.00720 * 180.02562 * 2 1 3 20 20 C 1.53001 * 109.47372 * 115.84429 * 19 2 1 21 21 C 1.53009 * 109.46541 * 355.84654 * 19 2 1 22 22 C 1.52997 * 109.47466 * 235.85048 * 19 2 1 23 23 N 1.46903 * 109.47010 * 59.82536 * 22 19 2 24 24 H 1.08998 * 109.47408 * 273.94606 * 1 2 3 25 25 H 1.09001 * 109.47363 * 33.94864 * 1 2 3 26 26 H 1.09003 * 109.46772 * 153.94936 * 1 2 3 27 27 H 1.08002 * 120.01443 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.98952 * 180.22729 * 5 4 3 29 29 H 1.08998 * 109.46860 * 300.00492 * 8 7 6 30 30 H 1.08997 * 109.46756 * 60.00445 * 8 7 6 31 31 H 0.97003 * 119.99705 * 180.02562 * 12 11 9 32 32 H 1.08004 * 119.98942 * 179.97438 * 17 6 5 33 33 H 1.08009 * 120.00717 * 179.97438 * 18 17 6 34 34 H 1.08998 * 109.46975 * 291.20954 * 20 19 2 35 35 H 1.08992 * 109.46655 * 51.21435 * 20 19 2 36 36 H 1.09000 * 109.47002 * 171.21016 * 20 19 2 37 37 H 1.09003 * 109.46750 * 186.57039 * 21 19 2 38 38 H 1.09000 * 109.47408 * 306.57531 * 21 19 2 39 39 H 1.09003 * 109.46911 * 66.57588 * 21 19 2 40 40 H 1.09000 * 109.47137 * 179.82431 * 22 19 2 41 41 H 1.08994 * 109.46942 * 299.82308 * 22 19 2 42 42 H 1.00897 * 111.00120 * 56.04505 * 23 22 19 43 43 H 1.00906 * 110.99515 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1646 1.2120 0.0000 4 6 3.5482 1.2153 -0.1181 5 6 4.2375 2.4122 -0.1233 6 6 3.5490 3.6099 0.0000 7 8 4.2290 4.7878 -0.0001 8 6 5.6502 4.7164 -0.1314 9 6 6.2271 6.1085 -0.1105 10 1 5.5738 6.9623 -0.0077 11 6 7.5889 6.2921 -0.2236 12 7 8.0924 7.5069 -0.2049 13 14 8.7187 4.8155 -0.4036 14 1 8.8925 4.4976 -1.8437 15 1 10.0403 5.1273 0.1976 16 1 8.1214 3.6475 0.2925 17 6 2.1676 3.6071 0.1237 18 6 1.4763 2.4115 0.1237 19 6 2.1976 -1.2686 -0.0006 20 6 2.9972 -1.3953 -1.2988 21 6 1.2066 -2.4298 0.1034 22 6 3.1539 -1.3059 1.1931 23 7 2.3864 -1.1803 2.4395 24 1 -0.3634 0.0707 1.0252 25 1 -0.3634 0.8525 -0.5739 26 1 -0.3633 -0.9233 -0.4513 27 1 4.0849 0.2826 -0.2096 28 1 5.3132 2.4152 -0.2188 29 1 6.0630 4.1399 0.6964 30 1 5.9040 4.2316 -1.0740 31 1 9.0504 7.6361 -0.2849 32 1 1.6323 4.5402 0.2201 33 1 0.4005 2.4096 0.2205 34 1 2.3119 -1.5258 -2.1363 35 1 3.5888 -0.4926 -1.4506 36 1 3.6605 -2.2578 -1.2343 37 1 1.7540 -3.3651 0.2204 38 1 0.5580 -2.2779 0.9662 39 1 0.6019 -2.4736 -0.8025 40 1 3.6967 -2.2511 1.1944 41 1 3.8617 -0.4806 1.1175 42 1 1.6791 -1.8971 2.5024 43 1 2.9961 -1.2018 3.2432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170059421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:45 Heat of formation + Delta-G solvation = 15.607258 kcal Electronic energy + Delta-G solvation = -22132.563087 eV Core-core repulsion = 18986.028711 eV Total energy + Delta-G solvation = -3146.534377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16009 -38.53304 -36.28112 -33.93636 -32.72787 -31.88102 -30.84658 -29.17246 -28.43529 -26.82378 -25.73571 -24.63186 -22.94500 -21.95456 -20.68447 -19.16326 -17.68665 -16.86018 -16.44359 -16.04321 -15.99182 -14.91055 -14.76273 -14.59480 -14.42868 -14.16067 -13.99906 -13.30572 -13.20206 -13.08112 -12.84249 -12.53698 -12.42287 -12.35481 -12.01167 -11.80043 -11.73018 -11.57435 -11.50544 -11.05304 -11.02874 -10.75822 -10.26860 -10.11247 -9.88776 -9.22704 -8.85535 -8.73815 -8.59943 -8.46473 -6.51482 -6.17283 -4.17853 1.80858 2.20375 3.20836 3.21651 3.28597 3.29147 4.30161 4.31877 4.34352 4.46227 4.54206 4.68881 4.85786 5.02912 5.13816 5.22925 5.24917 5.28761 5.35208 5.46109 5.51027 5.55745 5.61754 5.64717 5.72689 5.77896 5.82216 5.93606 6.08990 6.13986 6.40623 6.46805 6.60034 6.69404 6.86114 6.96773 6.98729 7.18132 7.25632 7.50754 7.57749 7.81025 8.17398 8.69231 8.94701 9.40045 10.95379 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026108 B = 0.004091 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.216225 B = 6842.077619 C = 7428.310372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.181 3.819 4 C -0.169 4.169 5 C -0.171 4.171 6 C 0.095 3.905 7 O -0.310 6.310 8 C 0.170 3.830 9 C -0.525 4.525 10 H 0.085 0.915 11 C 0.077 3.923 12 N -0.891 5.891 13 Si 0.873 3.127 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.265 1.265 17 C -0.118 4.118 18 C -0.156 4.156 19 C 0.187 3.813 20 C -0.179 4.179 21 C -0.154 4.154 22 C 0.036 3.964 23 N -0.836 5.836 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.015 0.985 30 H 0.010 0.990 31 H 0.268 0.732 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.027 0.973 41 H 0.094 0.906 42 H 0.332 0.668 43 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.711 -22.946 0.890 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.329 5.329 3 C 0.082 3.918 4 C -0.190 4.190 5 C -0.191 4.191 6 C 0.047 3.953 7 O -0.223 6.223 8 C 0.096 3.904 9 C -0.563 4.563 10 H 0.104 0.896 11 C -0.126 4.126 12 N -0.529 5.529 13 Si 0.699 3.301 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.138 4.138 18 C -0.178 4.178 19 C 0.100 3.900 20 C -0.238 4.238 21 C -0.212 4.212 22 C -0.096 4.096 23 N -0.366 5.366 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.112 0.888 42 H 0.145 0.855 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.900 -22.045 0.616 26.068 hybrid contribution 1.331 -1.825 0.133 2.263 sum -12.568 -23.869 0.749 26.987 Atomic orbital electron populations 1.21524 0.80689 1.01691 1.00613 1.46031 1.03553 1.01514 1.81812 1.17414 0.90812 0.85252 0.98298 1.20784 0.92489 0.97722 1.08035 1.21149 1.00157 0.91998 1.05750 1.19050 0.91956 0.85940 0.98380 1.86141 1.22925 1.26244 1.86974 1.20878 0.74817 0.99460 0.95196 1.20826 0.92825 0.91173 1.51438 0.89649 1.24707 0.97434 0.95997 0.94470 1.69861 1.13013 1.20478 1.49520 0.86889 0.80739 0.83355 0.79083 1.19697 1.20547 1.18956 1.20166 0.91354 0.97973 1.04268 1.20337 0.98978 0.90488 1.07959 1.20146 0.91884 0.84188 0.93759 1.22553 1.00900 1.03138 0.97186 1.22129 0.99421 0.97091 1.02549 1.22584 0.96137 1.00653 0.90177 1.58545 1.18354 1.56043 1.03651 0.93944 0.92254 0.91921 0.85323 0.85865 0.96752 0.97215 0.92175 0.85778 0.86275 0.92105 0.90193 0.92113 0.91820 0.91479 0.91745 0.95448 0.88803 0.85469 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.92 9.01 59.84 0.54 1.45 16 2 N -0.61 -7.05 2.77 -164.62 -0.46 -7.50 16 3 C 0.18 2.66 6.13 -83.69 -0.51 2.15 16 4 C -0.17 -2.65 6.70 -39.39 -0.26 -2.92 16 5 C -0.17 -3.23 9.03 -39.46 -0.36 -3.59 16 6 C 0.09 1.97 6.69 -39.24 -0.26 1.71 16 7 O -0.31 -7.70 10.12 -19.76 -0.20 -7.90 16 8 C 0.17 4.41 3.56 36.01 0.13 4.54 16 9 C -0.52 -15.69 9.99 -34.44 -0.34 -16.03 16 10 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 11 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 12 N -0.89 -27.37 13.96 55.43 0.77 -26.60 16 13 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.26 -6.13 6.54 56.52 0.37 -5.77 16 17 C -0.12 -2.12 9.98 -39.46 -0.39 -2.52 16 18 C -0.16 -2.39 9.16 -39.40 -0.36 -2.75 16 19 C 0.19 1.78 0.80 -131.82 -0.11 1.67 16 20 C -0.18 -1.70 8.31 37.16 0.31 -1.39 16 21 C -0.15 -1.08 6.69 37.16 0.25 -0.83 16 22 C 0.04 0.36 5.39 -3.82 -0.02 0.34 16 23 N -0.84 -7.94 9.44 -10.37 -0.10 -8.04 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.55 6.70 -51.93 -0.35 0.21 16 26 H 0.06 0.46 5.80 -51.93 -0.30 0.16 16 27 H 0.13 1.75 3.50 -52.49 -0.18 1.57 16 28 H 0.12 2.36 6.29 -52.49 -0.33 2.03 16 29 H 0.01 0.37 6.72 -51.93 -0.35 0.02 16 30 H 0.01 0.25 7.09 -51.93 -0.37 -0.12 16 31 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 32 H 0.12 2.09 8.06 -52.48 -0.42 1.66 16 33 H 0.12 1.54 6.40 -52.48 -0.34 1.20 16 34 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.08 0.91 4.80 -51.93 -0.25 0.66 16 36 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.45 6.33 -51.93 -0.33 0.12 16 39 H 0.06 0.42 7.10 -51.93 -0.37 0.05 16 40 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 1.14 4.64 -51.93 -0.24 0.90 16 42 H 0.33 2.57 7.19 -39.29 -0.28 2.29 16 43 H 0.34 2.91 9.08 -39.29 -0.36 2.55 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -32.37 328.10 -7.36 -39.73 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.16 Total: 4.85 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -1.49 Total: -16.01 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.22 Total: -42.14 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.20 Total: -7.90 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.37 -7.36 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170059421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.341 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds