Wall clock time and date at job start Tue Mar 31 2020 00:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.39945 * 119.99710 * 2 1 4 4 C 1.38867 * 120.01504 * 185.63646 * 3 2 1 5 5 C 1.38113 * 119.97645 * 179.74739 * 4 3 2 6 6 C 1.38704 * 120.01791 * 0.50476 * 5 4 3 7 7 O 1.36005 * 119.97833 * 179.75099 * 6 5 4 8 8 C 1.42904 * 117.00034 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.46690 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00361 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99740 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00021 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99847 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47623 * 89.99985 * 13 11 9 15 15 H 1.48507 * 109.46980 * 210.00111 * 13 11 9 16 16 H 1.48505 * 109.47245 * 329.99773 * 13 11 9 17 17 C 1.38695 * 120.03787 * 359.76945 * 6 5 4 18 18 C 1.38108 * 120.02083 * 359.97438 * 17 6 5 19 19 C 1.46500 * 120.00720 * 180.02562 * 2 1 3 20 20 C 1.53001 * 109.47372 * 115.84429 * 19 2 1 21 21 C 1.53009 * 109.46541 * 355.84654 * 19 2 1 22 22 C 1.52997 * 109.47466 * 235.85048 * 19 2 1 23 23 N 1.46903 * 109.47010 * 59.82536 * 22 19 2 24 24 H 1.08998 * 109.47408 * 273.94606 * 1 2 3 25 25 H 1.09001 * 109.47363 * 33.94864 * 1 2 3 26 26 H 1.09003 * 109.46772 * 153.94936 * 1 2 3 27 27 H 1.08002 * 120.01443 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.98952 * 180.22729 * 5 4 3 29 29 H 1.08998 * 109.46860 * 300.00492 * 8 7 6 30 30 H 1.08997 * 109.46756 * 60.00445 * 8 7 6 31 31 H 0.97003 * 119.99705 * 180.02562 * 12 11 9 32 32 H 1.08004 * 119.98942 * 179.97438 * 17 6 5 33 33 H 1.08009 * 120.00717 * 179.97438 * 18 17 6 34 34 H 1.08998 * 109.46975 * 291.20954 * 20 19 2 35 35 H 1.08992 * 109.46655 * 51.21435 * 20 19 2 36 36 H 1.09000 * 109.47002 * 171.21016 * 20 19 2 37 37 H 1.09003 * 109.46750 * 186.57039 * 21 19 2 38 38 H 1.09000 * 109.47408 * 306.57531 * 21 19 2 39 39 H 1.09003 * 109.46911 * 66.57588 * 21 19 2 40 40 H 1.09000 * 109.47137 * 179.82431 * 22 19 2 41 41 H 1.08994 * 109.46942 * 299.82308 * 22 19 2 42 42 H 1.00897 * 111.00120 * 56.04505 * 23 22 19 43 43 H 1.00906 * 110.99515 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1646 1.2120 0.0000 4 6 3.5482 1.2153 -0.1181 5 6 4.2375 2.4122 -0.1233 6 6 3.5490 3.6099 0.0000 7 8 4.2290 4.7878 -0.0001 8 6 5.6502 4.7164 -0.1314 9 6 6.2271 6.1085 -0.1105 10 1 5.5738 6.9623 -0.0077 11 6 7.5889 6.2921 -0.2236 12 7 8.0924 7.5069 -0.2049 13 14 8.7187 4.8155 -0.4036 14 1 8.8925 4.4976 -1.8437 15 1 10.0403 5.1273 0.1976 16 1 8.1214 3.6475 0.2925 17 6 2.1676 3.6071 0.1237 18 6 1.4763 2.4115 0.1237 19 6 2.1976 -1.2686 -0.0006 20 6 2.9972 -1.3953 -1.2988 21 6 1.2066 -2.4298 0.1034 22 6 3.1539 -1.3059 1.1931 23 7 2.3864 -1.1803 2.4395 24 1 -0.3634 0.0707 1.0252 25 1 -0.3634 0.8525 -0.5739 26 1 -0.3633 -0.9233 -0.4513 27 1 4.0849 0.2826 -0.2096 28 1 5.3132 2.4152 -0.2188 29 1 6.0630 4.1399 0.6964 30 1 5.9040 4.2316 -1.0740 31 1 9.0504 7.6361 -0.2849 32 1 1.6323 4.5402 0.2201 33 1 0.4005 2.4096 0.2205 34 1 2.3119 -1.5258 -2.1363 35 1 3.5888 -0.4926 -1.4506 36 1 3.6605 -2.2578 -1.2343 37 1 1.7540 -3.3651 0.2204 38 1 0.5580 -2.2779 0.9662 39 1 0.6019 -2.4736 -0.8025 40 1 3.6967 -2.2511 1.1944 41 1 3.8617 -0.4806 1.1175 42 1 1.6791 -1.8971 2.5024 43 1 2.9961 -1.2018 3.2432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170059421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:43 Heat of formation + Delta-G solvation = -7.308506 kcal Electronic energy + Delta-G solvation = -22133.556789 eV Core-core repulsion = 18986.028711 eV Total energy + Delta-G solvation = -3147.528079 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.29138 -39.89841 -37.61713 -35.08288 -34.72946 -32.73568 -32.11114 -30.57791 -30.05854 -27.77214 -26.64602 -25.43395 -24.75542 -23.32054 -22.11717 -20.11204 -19.49436 -18.42095 -17.65277 -17.38885 -16.77764 -16.46487 -16.36495 -15.92076 -15.58967 -15.22744 -15.10415 -14.85544 -14.31596 -14.12853 -13.95940 -13.70001 -13.44473 -13.33272 -13.21698 -13.11465 -13.02815 -12.76178 -12.63249 -12.35419 -12.23772 -11.94646 -11.84063 -11.77751 -11.46927 -11.06871 -10.91022 -9.99401 -9.83350 -9.44652 -8.43469 -7.72944 -6.53570 0.48856 0.83212 1.29728 1.33197 1.43849 2.24613 2.30062 2.77965 2.88165 3.01575 3.62408 3.83342 3.96993 4.00671 4.07377 4.24969 4.34239 4.37390 4.48156 4.56005 4.59490 4.70299 4.73741 4.79671 4.80609 4.81782 4.91477 4.95867 5.02883 5.04106 5.14355 5.21559 5.26500 5.29869 5.37777 5.46840 5.66233 5.83486 6.01685 6.28497 6.50303 6.62297 6.64857 6.71635 6.93934 7.12187 8.73416 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026108 B = 0.004091 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.216225 B = 6842.077619 C = 7428.310372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.609 5.609 3 C 0.195 3.805 4 C -0.168 4.168 5 C -0.178 4.178 6 C 0.042 3.958 7 O -0.342 6.342 8 C 0.187 3.813 9 C -0.555 4.555 10 H 0.034 0.966 11 C 0.020 3.980 12 N -0.936 5.936 13 Si 0.951 3.049 14 H -0.255 1.255 15 H -0.267 1.267 16 H -0.247 1.247 17 C -0.122 4.122 18 C -0.156 4.156 19 C 0.179 3.821 20 C -0.178 4.178 21 C -0.149 4.149 22 C 0.036 3.964 23 N -0.848 5.848 24 H 0.046 0.954 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.152 0.848 28 H 0.115 0.885 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.276 0.724 32 H 0.125 0.875 33 H 0.147 0.853 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.344 0.656 43 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.536 -27.477 0.718 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.321 5.321 3 C 0.094 3.906 4 C -0.189 4.189 5 C -0.197 4.197 6 C -0.004 4.004 7 O -0.257 6.257 8 C 0.113 3.887 9 C -0.592 4.592 10 H 0.052 0.948 11 C -0.179 4.179 12 N -0.574 5.574 13 Si 0.772 3.228 14 H -0.180 1.180 15 H -0.192 1.192 16 H -0.170 1.170 17 C -0.141 4.141 18 C -0.179 4.179 19 C 0.093 3.907 20 C -0.237 4.237 21 C -0.206 4.206 22 C -0.095 4.095 23 N -0.379 5.379 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.169 0.831 28 H 0.133 0.867 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.165 0.835 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.158 0.842 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.780 -26.621 0.449 30.452 hybrid contribution 1.389 -0.499 0.211 1.491 sum -13.391 -27.121 0.660 30.254 Atomic orbital electron populations 1.21738 0.79081 1.03202 1.01189 1.46333 1.04654 1.01072 1.80050 1.17574 0.90719 0.86549 0.95778 1.21010 0.93170 0.97415 1.07334 1.21176 0.99934 0.92452 1.06174 1.19389 0.92957 0.85310 1.02751 1.86047 1.22137 1.29009 1.88474 1.20501 0.75983 0.96706 0.95559 1.21063 0.93297 0.91899 1.52944 0.94792 1.25770 0.99022 0.99914 0.93162 1.70007 1.14035 1.23375 1.50003 0.85670 0.78060 0.78939 0.80151 1.17981 1.19175 1.17003 1.20341 0.90428 0.99314 1.04034 1.20589 1.00239 0.89699 1.07332 1.20403 0.92540 0.84076 0.93636 1.22531 1.01041 1.02868 0.97239 1.22097 0.98987 0.96334 1.03178 1.22513 0.95954 1.00550 0.90531 1.58525 1.18873 1.56821 1.03706 0.93542 0.92153 0.89343 0.83090 0.86654 0.96290 0.96313 0.91451 0.85665 0.83521 0.91673 0.92353 0.90254 0.90241 0.91009 0.90930 0.93583 0.91320 0.84190 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.33 9.01 127.77 1.15 2.49 16 2 N -0.61 -11.99 2.77 -674.74 -1.87 -13.86 16 3 C 0.20 5.37 6.13 38.14 0.23 5.61 16 4 C -0.17 -5.08 6.70 22.39 0.15 -4.93 16 5 C -0.18 -6.79 9.03 22.35 0.20 -6.58 16 6 C 0.04 1.82 6.69 22.49 0.15 1.97 16 7 O -0.34 -18.01 10.12 -93.61 -0.95 -18.95 16 8 C 0.19 10.04 3.56 71.24 0.25 10.29 16 9 C -0.55 -35.00 9.99 25.60 0.26 -34.75 16 10 H 0.03 2.40 8.06 -2.91 -0.02 2.37 16 11 C 0.02 1.22 5.47 84.66 0.46 1.69 16 12 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 13 Si 0.95 43.83 27.47 68.60 1.88 45.71 16 14 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 16 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 17 C -0.12 -4.45 9.98 22.35 0.22 -4.23 16 18 C -0.16 -4.58 9.16 22.39 0.21 -4.38 16 19 C 0.18 2.75 0.80 3.61 0.00 2.76 16 20 C -0.18 -2.79 8.31 71.98 0.60 -2.19 16 21 C -0.15 -1.38 6.69 71.99 0.48 -0.90 16 22 C 0.04 0.61 5.39 86.30 0.46 1.07 16 23 N -0.85 -13.63 9.44 -186.72 -1.76 -15.40 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.91 6.70 -2.39 -0.02 0.89 16 26 H 0.09 0.89 5.80 -2.39 -0.01 0.88 16 27 H 0.15 3.86 3.50 -2.91 -0.01 3.85 16 28 H 0.12 4.46 6.29 -2.91 -0.02 4.45 16 29 H 0.02 1.00 6.72 -2.39 -0.02 0.98 16 30 H 0.02 0.97 7.09 -2.39 -0.02 0.96 16 31 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 32 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.15 3.41 6.40 -2.91 -0.02 3.40 16 34 H 0.06 0.97 8.09 -2.39 -0.02 0.95 16 35 H 0.06 1.18 4.80 -2.39 -0.01 1.17 16 36 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 37 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.63 6.33 -2.39 -0.02 0.62 16 39 H 0.07 0.59 7.10 -2.39 -0.02 0.58 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 1.52 4.64 -2.39 -0.01 1.51 16 42 H 0.34 4.10 7.19 -89.70 -0.65 3.46 16 43 H 0.34 5.08 9.08 -89.69 -0.81 4.27 16 Total: -1.00 -74.37 328.10 1.97 -72.40 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -0.47 Total: 21.32 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 4.83 Total: -32.09 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -3.33 Total: -88.39 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.95 Total: -18.95 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -74.37 1.97 -72.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170059421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.091 kcal (2) G-P(sol) polarization free energy of solvation -74.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds