Wall clock time and date at job start Tue Mar 31 2020 00:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 14 19 19 C 1.40891 * 126.29510 * 90.00084 * 18 17 16 20 20 C 1.50700 * 126.28901 * 359.93828 * 19 18 17 21 21 C 1.34845 * 107.41590 * 179.97438 * 19 18 17 22 22 N 1.36341 * 108.22235 * 359.97438 * 21 19 18 23 23 H 0.97001 * 125.63627 * 180.02562 * 22 21 19 24 24 C 1.34854 * 126.28910 * 269.68838 * 18 17 16 25 25 C 1.50707 * 125.88827 * 0.02562 * 24 18 17 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 33 33 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 34 34 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 35 35 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 36 36 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 37 37 H 1.09001 * 109.47098 * 90.00420 * 20 19 18 38 38 H 1.09003 * 109.47145 * 210.00345 * 20 19 18 39 39 H 1.09000 * 109.47089 * 330.00205 * 20 19 18 40 40 H 1.08007 * 125.88626 * 179.97438 * 21 19 18 41 41 H 1.08994 * 109.46712 * 90.00265 * 25 24 18 42 42 H 1.09006 * 109.46630 * 210.00164 * 25 24 18 43 43 H 1.09000 * 109.46858 * 330.00371 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 6 -1.7555 4.5595 3.8415 19 6 -1.5522 5.9138 4.1726 20 6 -0.9035 6.9575 3.3003 21 6 -2.0439 6.1041 5.4137 22 7 -2.5439 4.9171 5.8608 23 1 -2.9590 4.7683 6.7248 24 6 -2.3685 3.9751 4.8909 25 6 -2.7852 2.5294 4.9777 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0905 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -1.4015 4.6154 1.7380 36 1 -2.0586 3.0742 2.3391 37 1 -1.6640 7.4447 2.6900 38 1 -0.4106 7.7002 3.9277 39 1 -0.1668 6.4827 2.6523 40 1 -2.0420 7.0362 5.9594 41 1 -1.9705 1.9413 5.3999 42 1 -3.6647 2.4425 5.6159 43 1 -3.0219 2.1590 3.9803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177592557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:09 Heat of formation + Delta-G solvation = -23.194828 kcal Electronic energy + Delta-G solvation = -21834.367126 eV Core-core repulsion = 18686.150164 eV Total energy + Delta-G solvation = -3148.216961 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33450 -39.09002 -35.38527 -33.89192 -32.67614 -32.35270 -31.47532 -30.14776 -27.84360 -27.05119 -25.45372 -23.84293 -22.22491 -20.37058 -19.62308 -19.40643 -18.60761 -17.69616 -17.38593 -16.02688 -15.50405 -15.20555 -14.76238 -14.18667 -13.82389 -13.37929 -13.18832 -13.16449 -12.97073 -12.75432 -12.64550 -12.42311 -12.34560 -12.31037 -12.04636 -11.83185 -11.68386 -11.45055 -11.23213 -10.88897 -10.64813 -10.54079 -10.41040 -9.75930 -9.64911 -9.06465 -8.83018 -8.47415 -8.42148 -7.97593 -7.90976 -6.51534 -4.19004 2.17423 2.85753 3.22921 3.38237 3.42197 3.48849 3.63073 4.18874 4.44765 4.85621 4.98820 5.10594 5.21871 5.23566 5.35787 5.39375 5.45318 5.48061 5.56658 5.76180 5.78801 5.83176 5.94837 5.97519 6.08015 6.11471 6.13230 6.29283 6.37011 6.44863 6.47904 6.74691 6.80077 6.97397 7.02903 7.07358 7.15016 7.40303 7.50144 7.54152 7.71774 8.27122 8.59381 8.76076 9.12063 9.51599 10.88736 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.003806 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.488531 B = 7354.707389 C = 7758.105216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.240 3.760 4 H 0.048 0.952 5 C -0.608 4.608 6 H 0.061 0.939 7 C 0.035 3.965 8 N -0.907 5.907 9 Si 1.049 2.951 10 H -0.281 1.281 11 H -0.273 1.273 12 H -0.288 1.288 13 N -0.705 5.705 14 C 0.500 3.500 15 O -0.553 6.553 16 C -0.133 4.133 17 C -0.027 4.027 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.081 4.081 21 C -0.024 4.024 22 N -0.560 5.560 23 H 0.410 0.590 24 C 0.014 3.986 25 C -0.085 4.085 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.268 0.732 32 H 0.391 0.609 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.159 0.841 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 7.170 15.091 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.137 3.863 4 H 0.065 0.935 5 C -0.647 4.647 6 H 0.079 0.921 7 C -0.171 4.171 8 N -0.541 5.541 9 Si 0.878 3.122 10 H -0.208 1.208 11 H -0.198 1.198 12 H -0.215 1.215 13 N -0.353 5.353 14 C 0.285 3.715 15 O -0.433 6.433 16 C -0.173 4.173 17 C -0.065 4.065 18 C -0.160 4.160 19 C -0.165 4.165 20 C -0.139 4.139 21 C -0.153 4.153 22 N -0.156 5.156 23 H 0.246 0.754 24 C -0.098 4.098 25 C -0.143 4.143 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.224 0.776 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.177 0.823 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.021 6.480 13.019 21.637 hybrid contribution 0.237 0.630 2.578 2.665 sum -15.784 7.111 15.598 23.302 Atomic orbital electron populations 1.21891 0.97157 0.98833 1.02249 1.22240 0.94028 1.00023 1.01187 1.19201 0.95724 0.88483 0.82940 0.93457 1.22194 0.89905 1.47874 1.04677 0.92092 1.25700 0.97496 0.93629 1.00240 1.70834 1.04438 1.42717 1.36067 0.83941 0.75354 0.77158 0.75767 1.20752 1.19832 1.21457 1.46269 1.14920 1.56215 1.17870 1.20595 0.82383 0.78993 0.89507 1.90643 1.51127 1.60091 1.41393 1.21632 0.98550 1.00870 0.96262 1.19609 0.94485 0.99374 0.93068 1.19258 1.06404 0.93704 0.96673 1.19447 1.06466 0.95026 0.95580 1.20130 0.99541 0.96111 0.98095 1.21522 1.06854 0.89744 0.97227 1.41779 1.49357 1.08731 1.15719 0.75408 1.20156 1.07167 0.92092 0.90346 1.20315 1.00792 0.89578 1.03594 0.93013 0.92906 0.95123 0.92392 0.92869 0.92209 0.77627 0.89930 0.89644 0.90809 0.91127 0.92246 0.92526 0.91722 0.82328 0.91171 0.92231 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 2 C -0.14 -3.06 5.20 -26.73 -0.14 -3.20 16 3 C 0.24 5.81 1.81 -69.08 -0.13 5.69 16 4 H 0.05 1.27 6.07 -51.93 -0.32 0.95 16 5 C -0.61 -16.68 9.09 -34.44 -0.31 -17.00 16 6 H 0.06 1.74 7.95 -52.48 -0.42 1.33 16 7 C 0.03 1.00 5.42 -17.82 -0.10 0.90 16 8 N -0.91 -27.46 13.70 55.43 0.76 -26.70 16 9 Si 1.05 25.83 25.39 -169.99 -4.32 21.51 16 10 H -0.28 -6.55 6.73 56.52 0.38 -6.16 16 11 H -0.27 -6.53 6.38 56.52 0.36 -6.17 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 N -0.71 -14.33 5.03 -54.93 -0.28 -14.61 16 14 C 0.50 9.44 6.42 -10.98 -0.07 9.36 16 15 O -0.55 -12.12 13.12 5.56 0.07 -12.05 16 16 C -0.13 -1.91 5.68 -27.88 -0.16 -2.07 16 17 C -0.03 -0.38 4.53 -27.88 -0.13 -0.51 16 18 C -0.15 -1.96 5.39 -104.82 -0.57 -2.52 16 19 C -0.16 -1.89 6.14 -104.82 -0.64 -2.53 16 20 C -0.08 -0.87 10.12 36.01 0.36 -0.51 16 21 C -0.02 -0.23 11.85 -16.75 -0.20 -0.43 16 22 N -0.56 -5.04 6.07 -9.12 -0.06 -5.09 16 23 H 0.41 2.37 8.96 -40.82 -0.37 2.00 16 24 C 0.01 0.16 7.16 -81.79 -0.59 -0.43 16 25 C -0.09 -0.74 10.21 36.01 0.37 -0.38 16 26 H 0.05 1.03 5.64 -51.93 -0.29 0.73 16 27 H 0.05 1.12 7.87 -51.93 -0.41 0.71 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.36 4.43 -51.93 -0.23 1.13 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.27 8.02 8.72 -40.82 -0.36 7.66 16 32 H 0.39 7.17 8.53 -40.82 -0.35 6.82 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.13 7.99 -51.93 -0.41 0.71 16 36 H 0.07 1.01 7.09 -51.93 -0.37 0.65 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.75 8.03 -51.93 -0.42 0.34 16 40 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.77 7.13 -51.93 -0.37 0.40 16 LS Contribution 342.68 15.07 5.16 5.16 Total: -1.00 -32.61 342.68 -7.59 -40.21 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.97 Total: 7.79 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -1.97 Total: -16.22 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.43 Total: -46.40 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -4.32 Total: 21.51 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.61 -7.59 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177592557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.011 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds