Wall clock time and date at job start Tue Mar 31 2020 00:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 14 19 19 C 1.40891 * 126.29510 * 90.00084 * 18 17 16 20 20 C 1.50700 * 126.28901 * 359.93828 * 19 18 17 21 21 C 1.34845 * 107.41590 * 179.97438 * 19 18 17 22 22 N 1.36341 * 108.22235 * 359.97438 * 21 19 18 23 23 H 0.97001 * 125.63627 * 180.02562 * 22 21 19 24 24 C 1.34854 * 126.28910 * 269.68838 * 18 17 16 25 25 C 1.50707 * 125.88827 * 0.02562 * 24 18 17 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 33 33 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 34 34 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 35 35 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 36 36 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 37 37 H 1.09001 * 109.47098 * 90.00420 * 20 19 18 38 38 H 1.09003 * 109.47145 * 210.00345 * 20 19 18 39 39 H 1.09000 * 109.47089 * 330.00205 * 20 19 18 40 40 H 1.08007 * 125.88626 * 179.97438 * 21 19 18 41 41 H 1.08994 * 109.46712 * 90.00265 * 25 24 18 42 42 H 1.09006 * 109.46630 * 210.00164 * 25 24 18 43 43 H 1.09000 * 109.46858 * 330.00371 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 6 -1.7555 4.5595 3.8415 19 6 -1.5522 5.9138 4.1726 20 6 -0.9035 6.9575 3.3003 21 6 -2.0439 6.1041 5.4137 22 7 -2.5439 4.9171 5.8608 23 1 -2.9590 4.7683 6.7248 24 6 -2.3685 3.9751 4.8909 25 6 -2.7852 2.5294 4.9777 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1425 -0.6140 32 1 2.2853 2.1184 1.9978 33 1 0.0905 2.6048 3.4843 34 1 0.7469 4.1462 2.8830 35 1 -1.4015 4.6154 1.7380 36 1 -2.0586 3.0742 2.3391 37 1 -1.6640 7.4447 2.6900 38 1 -0.4106 7.7002 3.9277 39 1 -0.1668 6.4827 2.6523 40 1 -2.0420 7.0362 5.9594 41 1 -1.9705 1.9413 5.3999 42 1 -3.6647 2.4425 5.6159 43 1 -3.0219 2.1590 3.9803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177592557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:08 Heat of formation + Delta-G solvation = -44.538024 kcal Electronic energy + Delta-G solvation = -21835.292636 eV Core-core repulsion = 18686.150164 eV Total energy + Delta-G solvation = -3149.142472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.13081 -40.69948 -37.16753 -35.00784 -34.43234 -33.49598 -33.10873 -31.14308 -29.25969 -28.39844 -26.31405 -25.04610 -24.08479 -22.07571 -21.12578 -20.41721 -19.73559 -19.51229 -18.14969 -17.57545 -17.21579 -16.63690 -15.78914 -15.49319 -15.27085 -14.85435 -14.57159 -14.44339 -14.16248 -14.08253 -13.90449 -13.84546 -13.45077 -13.33093 -13.18429 -13.06252 -12.94746 -12.71795 -12.49464 -12.40312 -12.24288 -12.21892 -11.69999 -11.61678 -11.46339 -10.96315 -10.65266 -10.61983 -9.73643 -9.28551 -8.77944 -8.70110 -6.46231 1.39763 1.40957 1.51027 1.69029 1.88252 1.97032 2.39950 2.53313 2.67284 3.03353 3.96391 4.09791 4.21061 4.28196 4.32052 4.37065 4.40326 4.48564 4.52852 4.58198 4.68977 4.77303 4.79895 4.86283 4.92405 4.96752 5.00040 5.08679 5.10717 5.21438 5.29063 5.31803 5.33955 5.50626 5.56509 5.60268 5.68880 5.71947 6.01017 6.17829 6.31964 6.52985 6.90670 6.93750 7.29395 7.54817 8.61280 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028262 B = 0.003806 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.488531 B = 7354.707389 C = 7758.105216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.134 4.134 3 C 0.245 3.755 4 H 0.023 0.977 5 C -0.605 4.605 6 H 0.039 0.961 7 C -0.010 4.010 8 N -0.936 5.936 9 Si 1.080 2.920 10 H -0.257 1.257 11 H -0.267 1.267 12 H -0.286 1.286 13 N -0.707 5.707 14 C 0.500 3.500 15 O -0.583 6.583 16 C -0.117 4.117 17 C -0.017 4.017 18 C -0.184 4.184 19 C -0.189 4.189 20 C -0.079 4.079 21 C -0.015 4.015 22 N -0.549 5.549 23 H 0.427 0.573 24 C 0.014 3.986 25 C -0.085 4.085 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.257 0.743 32 H 0.401 0.599 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.189 0.811 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.443 7.007 17.006 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.172 4.172 3 C 0.140 3.860 4 H 0.040 0.960 5 C -0.643 4.643 6 H 0.057 0.943 7 C -0.210 4.210 8 N -0.572 5.572 9 Si 0.904 3.096 10 H -0.182 1.182 11 H -0.192 1.192 12 H -0.213 1.213 13 N -0.356 5.356 14 C 0.288 3.712 15 O -0.464 6.464 16 C -0.157 4.157 17 C -0.055 4.055 18 C -0.191 4.191 19 C -0.196 4.196 20 C -0.136 4.136 21 C -0.145 4.145 22 N -0.145 5.145 23 H 0.266 0.734 24 C -0.099 4.099 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.235 0.765 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.206 0.794 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.984 6.322 14.992 24.252 hybrid contribution 0.830 0.766 2.078 2.365 sum -17.153 7.088 17.070 25.216 Atomic orbital electron populations 1.21771 0.95195 1.00510 1.01628 1.22139 0.95704 0.98288 1.01105 1.18880 0.93292 0.89846 0.83989 0.95965 1.22400 0.91757 1.46419 1.03739 0.94261 1.26847 0.97704 0.93646 1.02791 1.70931 1.05369 1.44891 1.36007 0.83537 0.74326 0.78513 0.73269 1.18176 1.19200 1.21290 1.46155 1.15940 1.56559 1.16950 1.21322 0.81242 0.78037 0.90634 1.90630 1.51849 1.60997 1.42902 1.21575 0.98978 1.01131 0.94000 1.19422 0.93928 0.98594 0.93572 1.19224 1.08581 0.94550 0.96729 1.19689 1.07989 0.95004 0.96898 1.20100 0.99178 0.96274 0.98086 1.21941 1.05208 0.90820 0.96559 1.41808 1.48546 1.08091 1.16097 0.73385 1.20400 1.06191 0.93147 0.90178 1.20365 1.01972 0.88255 1.03663 0.92871 0.94312 0.92233 0.93217 0.92190 0.93375 0.76468 0.87646 0.88722 0.92975 0.91842 0.92314 0.90905 0.93440 0.79435 0.90437 0.90090 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.52 71.98 0.61 -4.56 16 2 C -0.13 -5.84 5.20 30.59 0.16 -5.68 16 3 C 0.24 11.82 1.81 44.24 0.08 11.90 16 4 H 0.02 1.20 6.07 -2.39 -0.01 1.19 16 5 C -0.60 -33.61 9.09 25.60 0.23 -33.38 16 6 H 0.04 2.30 7.95 -2.91 -0.02 2.28 16 7 C -0.01 -0.60 5.42 84.65 0.46 -0.14 16 8 N -0.94 -57.70 13.70 21.45 0.29 -57.41 16 9 Si 1.08 51.95 25.39 68.60 1.74 53.69 16 10 H -0.26 -11.29 6.73 99.48 0.67 -10.62 16 11 H -0.27 -12.49 6.38 99.48 0.63 -11.85 16 12 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 13 N -0.71 -28.45 5.03 -446.10 -2.24 -30.69 16 14 C 0.50 18.61 6.42 87.66 0.56 19.17 16 15 O -0.58 -25.52 13.12 -3.02 -0.04 -25.56 16 16 C -0.12 -3.24 5.68 29.85 0.17 -3.07 16 17 C -0.02 -0.46 4.53 29.85 0.14 -0.33 16 18 C -0.18 -4.46 5.39 -19.99 -0.11 -4.57 16 19 C -0.19 -4.24 6.14 -19.99 -0.12 -4.36 16 20 C -0.08 -1.64 10.12 71.24 0.72 -0.92 16 21 C -0.01 -0.25 11.85 83.21 0.99 0.74 16 22 N -0.55 -8.18 6.07 -182.76 -1.11 -9.29 16 23 H 0.43 3.40 8.96 -92.71 -0.83 2.57 16 24 C 0.01 0.28 7.16 41.08 0.29 0.57 16 25 C -0.09 -1.27 10.21 71.24 0.73 -0.54 16 26 H 0.05 2.02 5.64 -2.39 -0.01 2.01 16 27 H 0.04 1.59 7.87 -2.38 -0.02 1.57 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 2.24 4.43 -2.39 -0.01 2.23 16 30 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.26 15.86 8.72 -92.71 -0.81 15.05 16 32 H 0.40 14.47 8.53 -92.71 -0.79 13.68 16 33 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.05 1.63 7.99 -2.38 -0.02 1.61 16 36 H 0.06 1.81 7.09 -2.39 -0.02 1.79 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.12 8.03 -2.39 -0.02 1.10 16 40 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.07 1.24 7.13 -2.39 -0.02 1.23 16 Total: -1.00 -70.84 342.68 2.80 -68.03 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -0.75 Total: 26.39 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 4.91 Total: -25.17 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -3.06 Total: -97.39 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.04 Total: -25.56 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 1.74 Total: 53.69 kcal Total: -70.84 2.80 -68.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177592557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.495 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds