Wall clock time and date at job start Tue Mar 31 2020 00:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47467 * 2 1 4 4 C 1.53000 * 109.47003 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46764 * 180.02562 * 4 3 2 6 6 C 1.36974 * 119.99987 * 274.04408 * 5 4 3 7 7 H 1.07997 * 119.99968 * 304.67041 * 6 5 4 8 8 C 1.38971 * 119.99906 * 124.66665 * 6 5 4 9 9 N 1.31417 * 120.00272 * 23.55350 * 8 6 5 10 10 Si 1.86800 * 119.99937 * 203.54651 * 8 6 5 11 11 H 1.48501 * 109.47247 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47131 * 120.00442 * 10 8 6 13 13 H 1.48503 * 109.47194 * 240.00522 * 10 8 6 14 14 C 1.34779 * 120.00170 * 94.04587 * 5 4 3 15 15 O 1.21653 * 119.99849 * 178.58761 * 14 5 4 16 16 C 1.47189 * 119.99741 * 358.30774 * 14 5 4 17 17 C 1.46711 * 127.02102 * 308.09973 * 16 14 5 18 18 C 1.34446 * 106.38921 * 180.02562 * 17 16 14 19 19 C 1.50700 * 125.45641 * 180.02562 * 18 17 16 20 20 N 1.36430 * 109.08749 * 359.97438 * 18 17 16 21 21 C 1.46492 * 124.82010 * 179.97438 * 20 18 17 22 22 C 1.34705 * 110.36005 * 359.72671 * 20 18 17 23 23 C 1.50699 * 125.89853 * 180.29888 * 22 20 18 24 24 H 1.09003 * 109.46992 * 59.99205 * 1 2 3 25 25 H 1.08994 * 109.47736 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47025 * 300.00200 * 1 2 3 27 27 H 1.09008 * 109.46966 * 240.00576 * 2 1 3 28 28 H 1.09001 * 109.47699 * 120.00579 * 2 1 3 29 29 H 1.09000 * 109.46705 * 60.00667 * 3 2 1 30 30 H 1.09000 * 109.47167 * 300.00373 * 3 2 1 31 31 H 1.09000 * 109.46973 * 60.00675 * 4 3 2 32 32 H 1.09000 * 109.47335 * 300.00113 * 4 3 2 33 33 H 0.97001 * 120.00247 * 184.99187 * 9 8 6 34 34 H 1.08001 * 126.80533 * 359.97438 * 17 16 14 35 35 H 1.08999 * 109.46935 * 89.96970 * 19 18 17 36 36 H 1.08999 * 109.47112 * 209.96952 * 19 18 17 37 37 H 1.08996 * 109.47084 * 329.96698 * 19 18 17 38 38 H 1.08997 * 109.47879 * 90.01950 * 21 20 18 39 39 H 1.08999 * 109.47505 * 210.02503 * 21 20 18 40 40 H 1.09006 * 109.47246 * 330.02401 * 21 20 18 41 41 H 1.09000 * 109.47196 * 270.19398 * 23 22 20 42 42 H 1.08998 * 109.47263 * 30.20056 * 23 22 20 43 43 H 1.09000 * 109.46653 * 150.19769 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2073 3.4979 -1.1830 7 1 4.8181 3.0800 -1.9696 8 6 3.5725 4.7198 -1.3710 9 7 3.2300 5.4490 -0.3327 10 14 3.2062 5.3258 -3.0996 11 1 3.6886 4.3269 -4.0869 12 1 1.7416 5.5114 -3.2591 13 1 3.8969 6.6206 -3.3269 14 6 4.3612 3.4309 1.1645 15 8 4.7911 4.5689 1.1633 16 6 4.1659 2.7192 2.4380 17 6 2.9464 2.0433 2.8943 18 6 3.2251 1.5361 4.1078 19 6 2.2680 0.7525 4.9687 20 7 4.5135 1.8434 4.4346 21 6 5.1742 1.4584 5.6841 22 6 5.0937 2.5464 3.4427 23 6 6.5108 3.0590 3.4349 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.9329 0.9288 -0.8909 32 1 3.9338 0.9284 0.8891 33 1 2.7231 6.2662 -0.4600 34 1 2.0100 1.9687 2.3614 35 1 2.3571 -0.3089 4.7375 36 1 2.5065 0.9169 6.0195 37 1 1.2482 1.0830 4.7716 38 1 5.6576 0.4900 5.5563 39 1 5.9227 2.2066 5.9449 40 1 4.4336 1.3923 6.4813 41 1 6.5387 4.0568 3.8729 42 1 7.1429 2.3887 4.0172 43 1 6.8757 3.1024 2.4087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192437098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:56 Heat of formation + Delta-G solvation = 20.069917 kcal Electronic energy + Delta-G solvation = -22958.835274 eV Core-core repulsion = 19812.494413 eV Total energy + Delta-G solvation = -3146.340861 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.73414 -37.69953 -35.12449 -33.19877 -32.43060 -32.09566 -31.31505 -28.78404 -27.94580 -26.44887 -24.79330 -23.76102 -22.61094 -20.81529 -20.53827 -19.19844 -17.62083 -16.39300 -15.73409 -15.36927 -15.04232 -14.80151 -14.29067 -13.79254 -13.63795 -13.46013 -13.07483 -12.99997 -12.81689 -12.54590 -12.37684 -12.11990 -12.03017 -11.97436 -11.79237 -11.60482 -11.30583 -11.13441 -10.99317 -10.75108 -10.62434 -10.49464 -10.35513 -10.25736 -9.92187 -9.62259 -8.38068 -7.89199 -7.66117 -7.20859 -6.82885 -5.82713 -3.72392 2.66674 3.27970 3.30326 3.37461 3.46366 3.49870 4.45958 4.83603 4.93524 5.08551 5.17907 5.20236 5.34850 5.40409 5.41900 5.45876 5.52325 5.63533 5.64855 5.69085 5.70696 5.96796 5.98969 6.06510 6.17924 6.22906 6.29728 6.40033 6.42090 6.45315 6.58667 6.64680 6.69087 6.76518 6.87166 7.06637 7.31642 7.58105 7.75793 7.84348 7.87108 8.55591 9.36595 9.48923 9.91109 10.71803 11.12523 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.007168 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.681994 B = 3905.433389 C = 5240.185534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.119 3.881 5 N -0.465 5.465 6 C -0.343 4.343 7 H 0.073 0.927 8 C 0.063 3.937 9 N -0.797 5.797 10 Si 0.882 3.118 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.543 3.457 15 O -0.507 6.507 16 C -0.175 4.175 17 C -0.169 4.169 18 C -0.010 4.010 19 C -0.076 4.076 20 N -0.448 5.448 21 C 0.073 3.927 22 C 0.043 3.957 23 C -0.074 4.074 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.253 0.747 34 H 0.145 0.855 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.158 -11.954 10.242 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.173 4.173 4 C -0.005 4.005 5 N -0.189 5.189 6 C -0.470 4.470 7 H 0.091 0.909 8 C -0.148 4.148 9 N -0.429 5.429 10 Si 0.708 3.292 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.212 1.212 14 C 0.330 3.670 15 O -0.382 6.382 16 C -0.185 4.185 17 C -0.193 4.193 18 C -0.118 4.118 19 C -0.133 4.133 20 N -0.127 5.127 21 C -0.069 4.069 22 C -0.069 4.069 23 C -0.132 4.132 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.162 0.838 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.782 -11.208 10.622 15.462 hybrid contribution -0.522 0.328 -0.815 1.022 sum -1.304 -10.881 9.807 14.706 Atomic orbital electron populations 1.21758 0.96690 1.00507 1.01699 1.21490 0.95093 0.98102 1.01224 1.22165 0.97634 0.94854 1.02664 1.21380 0.92709 0.86672 0.99777 1.43151 1.59895 1.10893 1.04952 1.18836 1.32037 1.03882 0.92240 0.90898 1.25605 0.96398 0.96191 0.96635 1.70508 1.31572 1.11566 1.29268 0.86625 0.78086 0.78675 0.85765 1.19474 1.20983 1.21236 1.17426 0.81196 0.86355 0.82043 1.90662 1.44807 1.16702 1.86055 1.21234 0.93868 1.05939 0.97448 1.22116 0.99016 1.03075 0.95142 1.20000 0.85660 1.08018 0.98121 1.20216 0.97364 0.98515 0.97213 1.43160 1.10461 1.44155 1.14879 1.21881 0.98481 1.01166 0.85381 1.20302 0.96080 1.01439 0.89109 1.20217 0.89258 0.99958 1.03743 0.92953 0.93596 0.93044 0.92547 0.92554 0.91722 0.91741 0.92998 0.92577 0.93584 0.83773 0.91750 0.92575 0.90656 0.91611 0.90293 0.90403 0.91174 0.92882 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.15 0.37 -1.59 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.13 -2.58 5.14 -26.73 -0.14 -2.72 16 4 C 0.12 2.54 4.92 -4.04 -0.02 2.52 16 5 N -0.46 -12.32 2.56 -116.10 -0.30 -12.62 16 6 C -0.34 -9.84 8.92 -14.98 -0.13 -9.97 16 7 H 0.07 2.06 7.93 -52.49 -0.42 1.64 16 8 C 0.06 1.82 5.34 -17.46 -0.09 1.72 16 9 N -0.80 -24.68 10.55 55.50 0.59 -24.10 16 10 Si 0.88 21.66 29.62 -169.99 -5.03 16.62 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 14 C 0.54 14.91 6.52 -12.62 -0.08 14.82 16 15 O -0.51 -16.06 14.48 5.23 0.08 -15.99 16 16 C -0.17 -3.98 4.85 -102.99 -0.50 -4.48 16 17 C -0.17 -3.31 9.02 -37.50 -0.34 -3.64 16 18 C -0.01 -0.17 6.84 -81.89 -0.56 -0.73 16 19 C -0.08 -0.86 10.05 36.01 0.36 -0.50 16 20 N -0.45 -7.11 3.09 -114.98 -0.35 -7.46 16 21 C 0.07 0.77 10.39 59.84 0.62 1.39 16 22 C 0.04 0.83 6.93 -81.48 -0.56 0.27 16 23 C -0.07 -1.25 9.63 36.01 0.35 -0.91 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.31 4.89 -51.93 -0.25 1.05 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.05 1.06 8.07 -51.93 -0.42 0.64 16 32 H 0.06 1.14 6.18 -51.93 -0.32 0.82 16 33 H 0.25 7.46 8.32 -40.82 -0.34 7.13 16 34 H 0.14 2.78 5.01 -52.49 -0.26 2.52 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.54 6.93 -51.93 -0.36 0.18 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.75 7.52 -51.93 -0.39 0.36 16 40 H 0.08 0.66 6.89 -51.93 -0.36 0.31 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 0.69 7.60 -51.93 -0.39 0.30 16 43 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -35.70 344.71 -7.67 -43.37 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.95 Total: 0.74 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.89 Total: -5.76 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.07 Total: -44.18 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.08 Total: -15.99 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.70 -7.67 -43.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192437098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.441 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds