Wall clock time and date at job start Tue Mar 31 2020 00:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47467 * 2 1 4 4 C 1.53000 * 109.47003 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46764 * 180.02562 * 4 3 2 6 6 C 1.36974 * 119.99987 * 274.04408 * 5 4 3 7 7 H 1.07997 * 119.99968 * 304.67041 * 6 5 4 8 8 C 1.38971 * 119.99906 * 124.66665 * 6 5 4 9 9 N 1.31417 * 120.00272 * 23.55350 * 8 6 5 10 10 Si 1.86800 * 119.99937 * 203.54651 * 8 6 5 11 11 H 1.48501 * 109.47247 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47131 * 120.00442 * 10 8 6 13 13 H 1.48503 * 109.47194 * 240.00522 * 10 8 6 14 14 C 1.34779 * 120.00170 * 94.04587 * 5 4 3 15 15 O 1.21653 * 119.99849 * 178.58761 * 14 5 4 16 16 C 1.47189 * 119.99741 * 358.30774 * 14 5 4 17 17 C 1.46711 * 127.02102 * 308.09973 * 16 14 5 18 18 C 1.34446 * 106.38921 * 180.02562 * 17 16 14 19 19 C 1.50700 * 125.45641 * 180.02562 * 18 17 16 20 20 N 1.36430 * 109.08749 * 359.97438 * 18 17 16 21 21 C 1.46492 * 124.82010 * 179.97438 * 20 18 17 22 22 C 1.34705 * 110.36005 * 359.72671 * 20 18 17 23 23 C 1.50699 * 125.89853 * 180.29888 * 22 20 18 24 24 H 1.09003 * 109.46992 * 59.99205 * 1 2 3 25 25 H 1.08994 * 109.47736 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47025 * 300.00200 * 1 2 3 27 27 H 1.09008 * 109.46966 * 240.00576 * 2 1 3 28 28 H 1.09001 * 109.47699 * 120.00579 * 2 1 3 29 29 H 1.09000 * 109.46705 * 60.00667 * 3 2 1 30 30 H 1.09000 * 109.47167 * 300.00373 * 3 2 1 31 31 H 1.09000 * 109.46973 * 60.00675 * 4 3 2 32 32 H 1.09000 * 109.47335 * 300.00113 * 4 3 2 33 33 H 0.97001 * 120.00247 * 184.99187 * 9 8 6 34 34 H 1.08001 * 126.80533 * 359.97438 * 17 16 14 35 35 H 1.08999 * 109.46935 * 89.96970 * 19 18 17 36 36 H 1.08999 * 109.47112 * 209.96952 * 19 18 17 37 37 H 1.08996 * 109.47084 * 329.96698 * 19 18 17 38 38 H 1.08997 * 109.47879 * 90.01950 * 21 20 18 39 39 H 1.08999 * 109.47505 * 210.02503 * 21 20 18 40 40 H 1.09006 * 109.47246 * 330.02401 * 21 20 18 41 41 H 1.09000 * 109.47196 * 270.19398 * 23 22 20 42 42 H 1.08998 * 109.47263 * 30.20056 * 23 22 20 43 43 H 1.09000 * 109.46653 * 150.19769 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2073 3.4979 -1.1830 7 1 4.8181 3.0800 -1.9696 8 6 3.5725 4.7198 -1.3710 9 7 3.2300 5.4490 -0.3327 10 14 3.2062 5.3258 -3.0996 11 1 3.6886 4.3269 -4.0869 12 1 1.7416 5.5114 -3.2591 13 1 3.8969 6.6206 -3.3269 14 6 4.3612 3.4309 1.1645 15 8 4.7911 4.5689 1.1633 16 6 4.1659 2.7192 2.4380 17 6 2.9464 2.0433 2.8943 18 6 3.2251 1.5361 4.1078 19 6 2.2680 0.7525 4.9687 20 7 4.5135 1.8434 4.4346 21 6 5.1742 1.4584 5.6841 22 6 5.0937 2.5464 3.4427 23 6 6.5108 3.0590 3.4349 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.9329 0.9288 -0.8909 32 1 3.9338 0.9284 0.8891 33 1 2.7231 6.2662 -0.4600 34 1 2.0100 1.9687 2.3614 35 1 2.3571 -0.3089 4.7375 36 1 2.5065 0.9169 6.0195 37 1 1.2482 1.0830 4.7716 38 1 5.6576 0.4900 5.5563 39 1 5.9227 2.2066 5.9449 40 1 4.4336 1.3923 6.4813 41 1 6.5387 4.0568 3.8729 42 1 7.1429 2.3887 4.0172 43 1 6.8757 3.1024 2.4087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192437098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:56 Heat of formation + Delta-G solvation = -1.981465 kcal Electronic energy + Delta-G solvation = -22959.791493 eV Core-core repulsion = 19812.494413 eV Total energy + Delta-G solvation = -3147.297081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.10874 -39.64280 -36.83729 -35.05737 -33.81047 -33.53072 -33.05748 -29.94852 -29.52950 -27.90480 -26.45479 -25.26461 -24.16020 -22.43134 -21.94276 -20.77476 -19.25219 -18.21522 -17.36561 -16.80771 -16.69058 -16.30283 -15.90888 -15.66115 -15.23240 -14.82139 -14.42513 -14.11216 -14.01118 -13.82773 -13.77498 -13.61004 -13.53078 -13.29141 -13.09585 -13.01150 -12.89843 -12.71496 -12.58395 -12.37014 -12.13944 -12.10364 -11.97466 -11.83698 -11.62799 -11.18122 -10.60433 -9.87147 -9.17988 -8.94971 -8.66821 -8.02300 -5.97844 1.24518 1.40099 1.40611 1.54693 1.77989 2.11222 2.40511 2.93223 3.12721 3.48630 3.96806 4.06813 4.10014 4.16754 4.26502 4.37565 4.42294 4.47165 4.54847 4.57286 4.65644 4.69789 4.74741 4.80450 4.90287 4.97530 4.99531 5.04688 5.08891 5.11783 5.17279 5.21855 5.29039 5.38731 5.48346 5.54615 5.56935 5.74987 6.07112 6.31370 6.36833 6.63737 7.17894 7.41296 7.83300 8.64541 8.94045 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.007168 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.681994 B = 3905.433389 C = 5240.185534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.122 4.122 4 C 0.123 3.877 5 N -0.480 5.480 6 C -0.363 4.363 7 H 0.071 0.929 8 C 0.009 3.991 9 N -0.841 5.841 10 Si 0.960 3.040 11 H -0.254 1.254 12 H -0.276 1.276 13 H -0.289 1.289 14 C 0.534 3.466 15 O -0.570 6.570 16 C -0.229 4.229 17 C -0.200 4.200 18 C 0.014 3.986 19 C -0.073 4.073 20 N -0.438 5.438 21 C 0.061 3.939 22 C 0.043 3.957 23 C -0.069 4.069 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.250 0.750 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 -14.921 12.125 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.161 4.161 4 C -0.001 4.001 5 N -0.203 5.203 6 C -0.490 4.490 7 H 0.088 0.912 8 C -0.198 4.198 9 N -0.475 5.475 10 Si 0.784 3.216 11 H -0.178 1.178 12 H -0.201 1.201 13 H -0.216 1.216 14 C 0.324 3.676 15 O -0.450 6.450 16 C -0.240 4.240 17 C -0.224 4.224 18 C -0.095 4.095 19 C -0.130 4.130 20 N -0.115 5.115 21 C -0.079 4.079 22 C -0.072 4.072 23 C -0.127 4.127 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.446 -14.244 12.510 19.013 hybrid contribution -0.229 1.168 -1.287 1.754 sum -1.675 -13.076 11.222 17.312 Atomic orbital electron populations 1.21734 0.95139 1.02169 1.01336 1.21412 0.96371 0.94662 1.02418 1.22004 0.95852 0.97740 1.00495 1.21475 0.94186 0.83995 1.00402 1.43479 1.59781 1.12563 1.04430 1.19157 1.32423 1.04422 0.93045 0.91169 1.26483 0.96162 0.96316 1.00876 1.70715 1.32931 1.12022 1.31806 0.85434 0.78016 0.77890 0.80300 1.17779 1.20116 1.21562 1.18128 0.79719 0.85950 0.83836 1.90585 1.47682 1.19383 1.87356 1.20962 0.97012 1.09045 0.96941 1.22057 0.98045 1.05141 0.97191 1.20633 0.86153 1.05703 0.97045 1.20384 0.96107 0.98830 0.97696 1.43474 1.10340 1.42219 1.15516 1.22351 0.99554 1.02656 0.83309 1.20458 0.96416 1.01165 0.89200 1.20188 0.88989 1.00918 1.02564 0.93770 0.90830 0.93084 0.91620 0.90988 0.93106 0.94684 0.92485 0.91477 0.94078 0.84532 0.89489 0.89786 0.90124 0.89188 0.89127 0.87567 0.91469 0.88345 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.11 -3.12 5.93 30.59 0.18 -2.93 16 3 C -0.12 -4.82 5.14 30.60 0.16 -4.66 16 4 C 0.12 5.41 4.92 86.38 0.43 5.84 16 5 N -0.48 -26.86 2.56 -639.48 -1.64 -28.50 16 6 C -0.36 -21.89 8.92 84.07 0.75 -21.14 16 7 H 0.07 4.14 7.93 -2.91 -0.02 4.12 16 8 C 0.01 0.52 5.34 84.93 0.45 0.97 16 9 N -0.84 -55.23 10.55 21.67 0.23 -55.00 16 10 Si 0.96 46.52 29.62 68.60 2.03 48.55 16 11 H -0.25 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 14 C 0.53 31.25 6.52 86.59 0.56 31.82 16 15 O -0.57 -38.84 14.48 -4.20 -0.06 -38.90 16 16 C -0.23 -10.84 4.85 -18.81 -0.09 -10.93 16 17 C -0.20 -7.89 9.02 23.62 0.21 -7.67 16 18 C 0.01 0.43 6.84 40.98 0.28 0.71 16 19 C -0.07 -1.33 10.05 71.24 0.72 -0.61 16 20 N -0.44 -12.70 3.09 -517.70 -1.60 -14.30 16 21 C 0.06 0.99 10.39 127.77 1.33 2.32 16 22 C 0.04 1.63 6.93 42.02 0.29 1.93 16 23 C -0.07 -2.34 9.63 71.24 0.69 -1.65 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 2.14 4.89 -2.39 -0.01 2.13 16 30 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 2.38 8.07 -2.39 -0.02 2.36 16 32 H 0.07 2.78 6.18 -2.39 -0.01 2.77 16 33 H 0.25 15.59 8.32 -92.71 -0.77 14.82 16 34 H 0.14 5.42 5.01 -2.91 -0.01 5.41 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.11 6.93 -2.39 -0.02 1.09 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.31 7.52 -2.39 -0.02 1.29 16 40 H 0.11 1.18 6.89 -2.38 -0.02 1.16 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.10 2.34 7.60 -2.39 -0.02 2.32 16 43 H 0.05 2.03 7.96 -2.39 -0.02 2.01 16 Total: -1.00 -85.68 344.71 6.62 -79.06 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.98 Total: 17.98 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 6.67 Total: -8.90 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -3.01 Total: -97.79 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.06 Total: -38.90 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -85.68 6.62 -79.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192437098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.078 kcal (2) G-P(sol) polarization free energy of solvation -85.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds