Wall clock time and date at job start Tue Mar 31 2020 00:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50693 * 119.99894 * 2 1 4 4 C 1.32989 * 119.99734 * 180.02562 * 2 1 3 5 5 C 1.47107 * 120.00551 * 352.83243 * 4 2 1 6 6 O 1.21609 * 119.99460 * 354.01182 * 5 4 2 7 7 N 1.34775 * 120.00153 * 174.00695 * 5 4 2 8 8 C 1.46500 * 120.00035 * 180.02562 * 7 5 4 9 9 H 1.09003 * 112.88165 * 333.16469 * 8 7 5 10 10 C 1.53947 * 113.66381 * 104.50647 * 8 7 5 11 11 C 1.53947 * 87.29332 * 89.82775 * 10 8 7 12 12 H 1.09003 * 113.66289 * 139.29940 * 11 10 8 13 13 N 1.46498 * 113.66698 * 270.26113 * 11 10 8 14 14 C 1.36932 * 120.00431 * 255.21741 * 13 11 10 15 15 H 1.08008 * 120.00003 * 0.28041 * 14 13 11 16 16 C 1.38813 * 120.00366 * 180.27141 * 14 13 11 17 17 N 1.31615 * 119.99688 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47265 * 60.00629 * 18 16 14 20 20 H 1.48507 * 109.46836 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47205 * 300.00078 * 18 16 14 22 22 C 1.52905 * 113.74557 * 201.73650 * 8 7 5 23 23 C 1.52906 * 121.13952 * 36.14410 * 22 8 7 24 24 C 1.53949 * 86.78846 * 100.81011 * 23 22 8 25 25 C 1.52913 * 121.13305 * 144.69832 * 22 8 7 26 26 H 1.09006 * 109.46606 * 264.38684 * 1 2 3 27 27 H 1.08992 * 109.47458 * 24.38134 * 1 2 3 28 28 H 1.09003 * 109.47021 * 144.39094 * 1 2 3 29 29 H 1.08998 * 109.47412 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47400 * 300.00450 * 3 2 1 31 31 H 1.09003 * 109.47320 * 60.00704 * 3 2 1 32 32 H 1.08002 * 120.00120 * 172.83634 * 4 2 1 33 33 H 0.97006 * 119.99854 * 0.02562 * 7 5 4 34 34 H 1.09002 * 113.57891 * 335.22820 * 10 8 7 35 35 H 1.08992 * 113.65184 * 204.44881 * 10 8 7 36 36 H 0.97002 * 119.99585 * 75.50129 * 13 11 10 37 37 H 0.96997 * 119.99693 * 179.97438 * 17 16 14 38 38 H 1.08996 * 113.65996 * 215.28418 * 23 22 8 39 39 H 1.09008 * 113.66039 * 346.33708 * 23 22 8 40 40 H 1.08999 * 113.58008 * 270.14072 * 24 23 22 41 41 H 1.08998 * 113.58367 * 139.33410 * 24 23 22 42 42 H 1.09007 * 113.65790 * 13.65626 * 25 22 8 43 43 H 1.08993 * 113.66587 * 144.70906 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4451 -2.4209 0.1579 6 8 0.2529 -2.4128 0.3979 7 7 2.1003 -3.5924 0.0368 8 6 1.3763 -4.8562 0.1940 9 1 0.4975 -4.7647 0.8323 10 6 1.1009 -5.5801 -1.1364 11 6 2.4525 -6.2918 -0.9449 12 1 2.4339 -7.3470 -1.2179 13 7 3.5849 -5.5714 -1.5321 14 6 4.1463 -6.0135 -2.7002 15 1 3.7514 -6.8909 -3.1910 16 6 5.2229 -5.3342 -3.2536 17 7 5.7043 -4.2653 -2.6554 18 14 5.9882 -5.9370 -4.8474 19 1 4.9650 -5.9249 -5.9236 20 1 7.1141 -5.0449 -5.2243 21 1 6.4945 -7.3206 -4.6612 22 6 2.2750 -6.0401 0.5528 23 6 3.4829 -5.8653 1.4739 24 6 2.6051 -6.4533 2.5936 25 6 1.7881 -7.1473 1.4885 26 1 -0.3633 -0.1005 1.0228 27 1 -0.3634 0.9359 -0.4242 28 1 -0.3633 -0.8355 -0.5984 29 1 3.3321 1.1060 -0.0005 30 1 1.9971 1.8767 -0.8899 31 1 1.9973 1.8766 0.8901 32 1 3.2456 -1.1554 -0.1172 33 1 3.0513 -3.5987 -0.1544 34 1 1.0774 -4.9137 -1.9987 35 1 0.2444 -6.2532 -1.0989 36 1 3.9396 -4.7835 -1.0913 37 1 6.4568 -3.7907 -3.0419 38 1 4.3315 -6.4951 1.2068 39 1 3.7613 -4.8241 1.6375 40 1 2.0412 -5.7016 3.1458 41 1 3.1360 -7.1479 3.2446 42 1 0.7124 -7.1303 1.6636 43 1 2.1603 -8.1374 1.2256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202397498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:55 Heat of formation + Delta-G solvation = 32.052987 kcal Electronic energy + Delta-G solvation = -22487.891178 eV Core-core repulsion = 19342.069942 eV Total energy + Delta-G solvation = -3145.821236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59108 -38.90237 -35.53037 -34.96513 -33.55197 -32.23428 -29.85093 -27.92228 -27.53681 -25.44978 -24.55715 -24.02853 -22.87741 -20.65856 -20.04259 -18.98876 -17.55292 -17.10942 -16.57381 -15.54143 -15.24239 -14.69976 -14.62458 -14.50280 -13.99805 -13.84004 -13.38463 -13.19952 -12.96637 -12.46063 -12.29710 -12.22789 -12.04716 -11.87964 -11.63346 -11.44963 -11.41211 -11.34724 -10.93789 -10.85036 -10.64154 -10.25179 -10.06472 -9.78333 -9.69219 -9.31197 -9.20187 -8.96505 -8.85501 -8.33774 -7.02769 -5.85367 -3.13252 1.61090 3.40464 3.45245 3.45525 3.57761 3.67712 4.51271 4.79084 4.88382 4.97747 5.00093 5.06935 5.19275 5.35391 5.42013 5.45609 5.50529 5.54142 5.66168 5.76548 5.88404 5.89585 5.92129 5.96330 6.00194 6.05220 6.11460 6.15158 6.25178 6.33222 6.36476 6.45190 6.65635 6.67436 6.72778 6.74859 6.78839 7.01280 7.19529 7.66111 8.05418 8.34445 8.69855 9.44999 10.00800 10.34773 11.37345 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.006480 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.633884 B = 4320.206290 C = 5961.572636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.046 4.046 3 C -0.124 4.124 4 C -0.222 4.222 5 C 0.547 3.453 6 O -0.555 6.555 7 N -0.694 5.694 8 C 0.154 3.846 9 H 0.088 0.912 10 C -0.186 4.186 11 C 0.179 3.821 12 H 0.063 0.937 13 N -0.700 5.700 14 C -0.241 4.241 15 H 0.072 0.928 16 C -0.011 4.011 17 N -0.934 5.934 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.131 4.131 23 C -0.116 4.116 24 C -0.141 4.141 25 C -0.104 4.104 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.407 0.593 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.380 0.620 37 H 0.256 0.744 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.971 3.894 8.887 11.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.048 4.048 3 C -0.181 4.181 4 C -0.243 4.243 5 C 0.337 3.663 6 O -0.436 6.436 7 N -0.345 5.345 8 C 0.048 3.952 9 H 0.106 0.894 10 C -0.228 4.228 11 C 0.067 3.933 12 H 0.081 0.919 13 N -0.339 5.339 14 C -0.372 4.372 15 H 0.090 0.910 16 C -0.207 4.207 17 N -0.582 5.582 18 Si 0.740 3.260 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.133 4.133 23 C -0.154 4.154 24 C -0.179 4.179 25 C -0.142 4.142 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.215 0.785 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.681 3.815 8.868 12.337 hybrid contribution 1.162 -0.013 -0.973 1.515 sum -6.519 3.802 7.896 10.923 Atomic orbital electron populations 1.21080 0.91140 1.02111 1.03292 1.22446 0.96678 0.94378 0.91318 1.20973 1.00093 0.94552 1.02443 1.22519 1.00653 0.92011 1.09134 1.18514 0.86800 0.84320 0.76651 1.90692 1.15110 1.87833 1.49990 1.45651 1.13307 1.04597 1.70944 1.21353 0.94155 0.81902 0.97794 0.89361 1.24280 1.00683 1.00441 0.97419 1.21041 0.87561 0.95323 0.89354 0.91885 1.42072 1.33866 1.31782 1.26207 1.19227 1.10145 1.08889 0.98895 0.91015 1.24717 0.98895 0.97832 0.99225 1.69612 1.27777 1.20187 1.40586 0.86242 0.78633 0.77753 0.83388 1.21280 1.21707 1.21248 1.23403 0.97001 0.96312 0.96616 1.22511 0.96741 1.01096 0.95017 1.22857 0.98815 0.99804 0.96398 1.22485 0.99459 0.97188 0.95095 0.90757 0.93153 0.89245 0.91308 0.90954 0.90805 0.85393 0.75463 0.91043 0.90656 0.78491 0.93379 0.89489 0.91989 0.90799 0.91956 0.91677 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 8.48 36.01 0.31 -1.31 16 2 C -0.05 -0.62 6.11 -101.17 -0.62 -1.24 16 3 C -0.12 -1.26 10.10 36.00 0.36 -0.90 16 4 C -0.22 -3.45 9.62 -37.80 -0.36 -3.81 16 5 C 0.55 9.82 7.61 -12.66 -0.10 9.72 16 6 O -0.55 -10.82 12.92 5.27 0.07 -10.76 16 7 N -0.69 -12.46 4.72 -54.55 -0.26 -12.71 16 8 C 0.15 2.67 4.07 -67.49 -0.27 2.39 16 9 H 0.09 1.55 7.54 -51.93 -0.39 1.15 16 10 C -0.19 -3.42 7.68 -25.75 -0.20 -3.62 16 11 C 0.18 3.51 4.35 -67.49 -0.29 3.22 16 12 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 13 N -0.70 -16.56 4.97 -52.99 -0.26 -16.83 16 14 C -0.24 -6.43 9.98 -15.06 -0.15 -6.58 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 18 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.13 -2.13 0.77 -154.72 -0.12 -2.25 16 23 C -0.12 -1.84 7.18 -26.29 -0.19 -2.03 16 24 C -0.14 -1.86 8.08 -25.75 -0.21 -2.07 16 25 C -0.10 -1.40 7.84 -26.28 -0.21 -1.61 16 26 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 27 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.09 1.43 6.14 -51.93 -0.32 1.11 16 29 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.13 1.87 7.88 -52.49 -0.41 1.46 16 33 H 0.41 7.68 5.92 -40.82 -0.24 7.44 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.38 9.25 5.39 -40.82 -0.22 9.03 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.06 1.01 7.51 -51.92 -0.39 0.61 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -29.31 345.78 -8.68 -37.98 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -6.99 Total: 16.70 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -2.14 Total: -10.48 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.20 Total: -55.50 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.31 -8.68 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202397498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.036 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds