Wall clock time and date at job start Tue Mar 31 2020 00:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50693 * 119.99894 * 2 1 4 4 C 1.32989 * 119.99734 * 180.02562 * 2 1 3 5 5 C 1.47107 * 120.00551 * 352.83243 * 4 2 1 6 6 O 1.21609 * 119.99460 * 354.01182 * 5 4 2 7 7 N 1.34775 * 120.00153 * 174.00695 * 5 4 2 8 8 C 1.46500 * 120.00035 * 180.02562 * 7 5 4 9 9 H 1.09003 * 112.88165 * 333.16469 * 8 7 5 10 10 C 1.53947 * 113.66381 * 104.50647 * 8 7 5 11 11 C 1.53947 * 87.29332 * 89.82775 * 10 8 7 12 12 H 1.09003 * 113.66289 * 139.29940 * 11 10 8 13 13 N 1.46498 * 113.66698 * 270.26113 * 11 10 8 14 14 C 1.36932 * 120.00431 * 255.21741 * 13 11 10 15 15 H 1.08008 * 120.00003 * 0.28041 * 14 13 11 16 16 C 1.38813 * 120.00366 * 180.27141 * 14 13 11 17 17 N 1.31615 * 119.99688 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47265 * 60.00629 * 18 16 14 20 20 H 1.48507 * 109.46836 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47205 * 300.00078 * 18 16 14 22 22 C 1.52905 * 113.74557 * 201.73650 * 8 7 5 23 23 C 1.52906 * 121.13952 * 36.14410 * 22 8 7 24 24 C 1.53949 * 86.78846 * 100.81011 * 23 22 8 25 25 C 1.52913 * 121.13305 * 144.69832 * 22 8 7 26 26 H 1.09006 * 109.46606 * 264.38684 * 1 2 3 27 27 H 1.08992 * 109.47458 * 24.38134 * 1 2 3 28 28 H 1.09003 * 109.47021 * 144.39094 * 1 2 3 29 29 H 1.08998 * 109.47412 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47400 * 300.00450 * 3 2 1 31 31 H 1.09003 * 109.47320 * 60.00704 * 3 2 1 32 32 H 1.08002 * 120.00120 * 172.83634 * 4 2 1 33 33 H 0.97006 * 119.99854 * 0.02562 * 7 5 4 34 34 H 1.09002 * 113.57891 * 335.22820 * 10 8 7 35 35 H 1.08992 * 113.65184 * 204.44881 * 10 8 7 36 36 H 0.97002 * 119.99585 * 75.50129 * 13 11 10 37 37 H 0.96997 * 119.99693 * 179.97438 * 17 16 14 38 38 H 1.08996 * 113.65996 * 215.28418 * 23 22 8 39 39 H 1.09008 * 113.66039 * 346.33708 * 23 22 8 40 40 H 1.08999 * 113.58008 * 270.14072 * 24 23 22 41 41 H 1.08998 * 113.58367 * 139.33410 * 24 23 22 42 42 H 1.09007 * 113.65790 * 13.65626 * 25 22 8 43 43 H 1.08993 * 113.66587 * 144.70906 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4451 -2.4209 0.1579 6 8 0.2529 -2.4128 0.3979 7 7 2.1003 -3.5924 0.0368 8 6 1.3763 -4.8562 0.1940 9 1 0.4975 -4.7647 0.8323 10 6 1.1009 -5.5801 -1.1364 11 6 2.4525 -6.2918 -0.9449 12 1 2.4339 -7.3470 -1.2179 13 7 3.5849 -5.5714 -1.5321 14 6 4.1463 -6.0135 -2.7002 15 1 3.7514 -6.8909 -3.1910 16 6 5.2229 -5.3342 -3.2536 17 7 5.7043 -4.2653 -2.6554 18 14 5.9882 -5.9370 -4.8474 19 1 4.9650 -5.9249 -5.9236 20 1 7.1141 -5.0449 -5.2243 21 1 6.4945 -7.3206 -4.6612 22 6 2.2750 -6.0401 0.5528 23 6 3.4829 -5.8653 1.4739 24 6 2.6051 -6.4533 2.5936 25 6 1.7881 -7.1473 1.4885 26 1 -0.3633 -0.1005 1.0228 27 1 -0.3634 0.9359 -0.4242 28 1 -0.3633 -0.8355 -0.5984 29 1 3.3321 1.1060 -0.0005 30 1 1.9971 1.8767 -0.8899 31 1 1.9973 1.8766 0.8901 32 1 3.2456 -1.1554 -0.1172 33 1 3.0513 -3.5987 -0.1544 34 1 1.0774 -4.9137 -1.9987 35 1 0.2444 -6.2532 -1.0989 36 1 3.9396 -4.7835 -1.0913 37 1 6.4568 -3.7907 -3.0419 38 1 4.3315 -6.4951 1.2068 39 1 3.7613 -4.8241 1.6375 40 1 2.0412 -5.7016 3.1458 41 1 3.1360 -7.1479 3.2446 42 1 0.7124 -7.1303 1.6636 43 1 2.1603 -8.1374 1.2256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202397498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:53 Heat of formation + Delta-G solvation = 15.387084 kcal Electronic energy + Delta-G solvation = -22488.613866 eV Core-core repulsion = 19342.069942 eV Total energy + Delta-G solvation = -3146.543924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.98252 -40.24868 -36.80637 -36.29325 -35.25835 -33.83799 -31.71505 -29.00579 -28.60581 -26.82457 -26.15964 -25.36918 -24.49880 -22.06039 -21.38440 -20.35052 -19.22964 -18.58211 -17.95883 -16.87700 -16.76714 -16.33074 -15.94924 -15.88483 -15.51749 -15.02038 -14.85104 -14.60302 -14.43601 -13.90701 -13.37491 -13.31767 -13.22046 -13.18990 -13.07747 -12.87040 -12.71343 -12.70049 -12.50458 -12.41005 -12.20806 -11.97085 -11.81862 -11.30522 -11.11561 -10.81087 -10.64879 -10.55747 -10.17111 -9.70976 -8.96911 -7.94491 -5.21323 0.42005 1.48042 1.49642 1.55428 2.21845 2.33664 2.56693 3.37397 3.41801 3.64210 3.76637 3.86365 3.93868 3.94976 4.04208 4.19289 4.27380 4.34373 4.53905 4.58650 4.65201 4.70014 4.79381 4.80434 4.86464 4.92065 4.95266 4.98684 5.04000 5.10360 5.12401 5.17979 5.20442 5.24292 5.52450 5.54276 5.57051 5.60560 5.66756 5.76627 6.28741 6.62606 7.28321 7.35639 8.09708 8.33994 9.28180 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.006480 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.633884 B = 4320.206290 C = 5961.572636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.025 4.025 3 C -0.123 4.123 4 C -0.257 4.257 5 C 0.541 3.459 6 O -0.576 6.576 7 N -0.698 5.698 8 C 0.155 3.845 9 H 0.092 0.908 10 C -0.179 4.179 11 C 0.164 3.836 12 H 0.062 0.938 13 N -0.709 5.709 14 C -0.243 4.243 15 H 0.073 0.927 16 C -0.067 4.067 17 N -0.962 5.962 18 Si 0.969 3.031 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.279 1.279 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.094 4.094 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.401 0.599 34 H 0.038 0.962 35 H 0.101 0.899 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.721 3.966 9.748 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.027 4.027 3 C -0.180 4.180 4 C -0.278 4.278 5 C 0.332 3.668 6 O -0.460 6.460 7 N -0.348 5.348 8 C 0.049 3.951 9 H 0.110 0.890 10 C -0.221 4.221 11 C 0.053 3.947 12 H 0.080 0.920 13 N -0.348 5.348 14 C -0.375 4.375 15 H 0.091 0.909 16 C -0.260 4.260 17 N -0.612 5.612 18 Si 0.798 3.202 19 H -0.211 1.211 20 H -0.222 1.222 21 H -0.205 1.205 22 C -0.123 4.123 23 C -0.161 4.161 24 C -0.163 4.163 25 C -0.132 4.132 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.148 0.852 33 H 0.238 0.762 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.208 0.792 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.464 3.855 9.744 13.470 hybrid contribution 1.305 0.004 -1.240 1.800 sum -7.159 3.859 8.504 11.767 Atomic orbital electron populations 1.21054 0.91105 1.02469 1.02936 1.22883 0.96942 0.95260 0.87645 1.21076 0.99771 0.92838 1.04267 1.22507 1.00837 0.91723 1.12718 1.18958 0.86724 0.85018 0.76068 1.90670 1.15865 1.88184 1.51254 1.45733 1.12945 1.05078 1.71004 1.21361 0.94505 0.82102 0.97082 0.89026 1.24214 1.00871 1.00256 0.96760 1.21270 0.86740 0.94786 0.91870 0.91957 1.42158 1.34928 1.32022 1.25722 1.19566 1.09809 1.08480 0.99666 0.90891 1.25425 0.99908 0.98437 1.02246 1.69752 1.28237 1.21356 1.41876 0.85288 0.77519 0.77306 0.80053 1.21051 1.22186 1.20500 1.23341 0.97473 0.96890 0.94644 1.22510 0.96451 1.00513 0.96607 1.22785 0.97821 0.99880 0.95823 1.22532 1.00735 0.96456 0.93513 0.90737 0.90170 0.92078 0.91115 0.89243 0.88454 0.85177 0.76179 0.94300 0.88068 0.79176 0.93982 0.90961 0.92997 0.90185 0.89987 0.89842 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 8.48 71.24 0.60 -2.48 16 2 C -0.03 -0.66 6.11 -17.62 -0.11 -0.77 16 3 C -0.12 -2.20 10.10 71.23 0.72 -1.48 16 4 C -0.26 -8.09 9.62 23.43 0.23 -7.87 16 5 C 0.54 19.91 7.61 86.57 0.66 20.57 16 6 O -0.58 -22.88 12.92 -4.06 -0.05 -22.93 16 7 N -0.70 -25.80 4.72 -444.76 -2.10 -27.90 16 8 C 0.16 5.38 4.07 45.28 0.18 5.56 16 9 H 0.09 3.14 7.54 -2.39 -0.02 3.12 16 10 C -0.18 -6.61 7.68 31.23 0.24 -6.37 16 11 C 0.16 6.42 4.35 45.28 0.20 6.62 16 12 H 0.06 2.43 8.12 -2.39 -0.02 2.41 16 13 N -0.71 -34.34 4.97 -321.57 -1.60 -35.94 16 14 C -0.24 -13.20 9.98 84.03 0.84 -12.36 16 15 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 16 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 17 N -0.96 -56.27 13.06 21.65 0.28 -55.98 16 18 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 C -0.12 -3.86 0.77 -52.32 -0.04 -3.90 16 23 C -0.12 -3.84 7.18 30.88 0.22 -3.62 16 24 C -0.13 -3.00 8.08 31.23 0.25 -2.75 16 25 C -0.09 -2.30 7.84 30.89 0.24 -2.05 16 26 H 0.07 1.94 8.04 -2.38 -0.02 1.92 16 27 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16 28 H 0.06 1.97 6.14 -2.39 -0.01 1.95 16 29 H 0.07 1.27 7.82 -2.39 -0.02 1.25 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.13 3.95 7.88 -2.91 -0.02 3.92 16 33 H 0.40 15.84 5.92 -92.70 -0.55 15.30 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.37 18.86 5.39 -92.71 -0.50 18.36 16 37 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.05 1.71 7.51 -2.38 -0.02 1.69 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -64.04 345.78 3.22 -60.82 By element: Atomic # 1 Polarization: 48.67 SS G_CDS: -0.05 Total: 48.62 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 4.70 Total: -14.19 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -3.41 Total: -119.82 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -64.04 3.22 -60.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202397498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.211 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds