Wall clock time and date at job start Tue Mar 31 2020 00:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50697 * 120.00393 * 2 1 4 4 C 1.32994 * 120.00078 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99739 * 359.97438 * 4 2 1 6 6 O 1.21610 * 120.00178 * 359.72753 * 5 4 2 7 7 N 1.34784 * 119.99985 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99893 * 179.72717 * 7 5 4 9 9 H 1.08991 * 112.88719 * 26.83832 * 8 7 5 10 10 C 1.53955 * 113.65676 * 255.49407 * 8 7 5 11 11 C 1.53952 * 87.29427 * 270.26312 * 10 8 7 12 12 H 1.08999 * 113.66330 * 220.79478 * 11 10 8 13 13 N 1.46496 * 113.66372 * 89.83363 * 11 10 8 14 14 C 1.36938 * 120.00135 * 104.50295 * 13 11 10 15 15 H 1.08002 * 120.00008 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99661 * 180.02562 * 14 13 11 17 17 N 1.31628 * 119.99289 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00434 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47031 * 90.00379 * 18 16 14 20 20 H 1.48502 * 109.47390 * 210.00063 * 18 16 14 21 21 H 1.48495 * 109.47156 * 330.00346 * 18 16 14 22 22 C 1.52906 * 113.66158 * 158.31142 * 8 7 5 23 23 C 1.52913 * 121.13858 * 323.84519 * 22 8 7 24 24 C 1.53955 * 86.78283 * 209.38119 * 23 22 8 25 25 C 1.52912 * 121.13914 * 215.28521 * 22 8 7 26 26 H 1.09004 * 109.47078 * 239.99613 * 1 2 3 27 27 H 1.08998 * 109.46954 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47590 * 119.99451 * 1 2 3 29 29 H 1.09000 * 109.47347 * 270.00571 * 3 2 1 30 30 H 1.09003 * 109.46583 * 30.00326 * 3 2 1 31 31 H 1.08996 * 109.47395 * 150.00144 * 3 2 1 32 32 H 1.08004 * 120.00348 * 179.97438 * 4 2 1 33 33 H 0.97005 * 119.99846 * 359.72505 * 7 5 4 34 34 H 1.08997 * 113.58538 * 24.86529 * 10 8 7 35 35 H 1.09001 * 113.57447 * 155.58694 * 10 8 7 36 36 H 0.97000 * 119.99767 * 284.50586 * 13 11 10 37 37 H 0.97003 * 119.99574 * 179.97438 * 17 16 14 38 38 H 1.08995 * 113.66578 * 323.85187 * 23 22 8 39 39 H 1.09002 * 113.66302 * 94.90976 * 23 22 8 40 40 H 1.09008 * 113.58018 * 270.13298 * 24 23 22 41 41 H 1.08998 * 113.65538 * 139.35415 * 24 23 22 42 42 H 1.08997 * 113.66355 * 265.09722 * 25 22 8 43 43 H 1.09002 * 113.65946 * 36.15228 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4364 -2.4257 -0.0005 6 8 0.2203 -2.4257 0.0050 7 7 2.1103 -3.5930 -0.0005 8 6 1.3777 -4.8616 0.0055 9 1 0.3880 -4.7818 -0.4439 10 6 1.3803 -5.5700 1.3724 11 6 2.6717 -6.2767 0.9219 12 1 2.7159 -7.3287 1.2037 13 7 3.8931 -5.5436 1.2638 14 6 4.6768 -5.9661 2.3043 15 1 4.3946 -6.8401 2.8726 16 6 5.8338 -5.2711 2.6285 17 7 6.5867 -5.6771 3.6289 18 14 6.3222 -3.7599 1.6452 19 1 5.7201 -2.5513 2.2633 20 1 7.8014 -3.6289 1.6409 21 1 5.8335 -3.8981 0.2498 22 6 2.1957 -6.0450 -0.5126 23 6 3.1933 -5.8752 -1.6590 24 6 2.9018 -7.3444 -2.0150 25 6 1.5402 -7.1668 -1.3189 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0276 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 2.4421 1.6198 -1.0276 30 1 1.6714 2.0646 0.5139 31 1 3.2129 1.1747 0.5138 32 1 3.2520 -1.1518 -0.0009 33 1 3.0803 -3.5930 -0.0045 34 1 1.5248 -4.8929 2.2143 35 1 0.5380 -6.2471 1.5141 36 1 4.1467 -4.7588 0.7532 37 1 7.3955 -5.1916 3.8553 38 1 2.8675 -5.1675 -2.4213 39 1 4.2165 -5.7005 -1.3263 40 1 3.5593 -8.0537 -1.5122 41 1 2.8231 -7.5274 -3.0867 42 1 1.2427 -8.0237 -0.7146 43 1 0.7498 -6.8220 -1.9857 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202397509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:58 Heat of formation + Delta-G solvation = 35.190504 kcal Electronic energy + Delta-G solvation = -22613.210103 eV Core-core repulsion = 19467.524920 eV Total energy + Delta-G solvation = -3145.685183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73317 -39.07450 -35.71150 -35.09367 -33.71760 -32.30102 -30.50463 -28.10264 -27.68495 -25.55868 -24.68511 -24.21573 -22.53706 -20.89708 -20.16272 -19.19942 -18.07003 -17.04956 -16.81589 -15.79053 -15.23013 -15.00050 -14.65670 -14.59535 -14.17556 -13.92600 -13.54877 -13.51676 -12.77490 -12.70374 -12.42089 -12.32527 -12.22368 -11.98429 -11.91529 -11.73553 -11.56833 -11.45655 -11.07490 -10.98876 -10.76808 -10.34805 -10.08668 -9.82805 -9.72398 -9.50248 -9.34996 -9.16723 -8.93956 -8.49467 -7.37061 -5.85994 -3.22403 1.44432 3.22212 3.26303 3.33847 3.42054 3.50675 4.47572 4.59312 4.71687 4.81006 4.89546 4.93529 5.05772 5.19014 5.25605 5.35476 5.36479 5.40002 5.54113 5.59510 5.63490 5.72862 5.80661 5.87316 5.89932 5.90122 5.93635 6.08799 6.10008 6.19277 6.26003 6.34209 6.49341 6.52346 6.53794 6.62455 6.70188 6.84633 7.02147 7.82757 7.91408 8.33392 8.51114 9.09292 9.81428 9.99886 11.32135 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012049 B = 0.007376 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.337562 B = 3795.149892 C = 5338.702900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.039 4.039 3 C -0.126 4.126 4 C -0.233 4.233 5 C 0.547 3.453 6 O -0.549 6.549 7 N -0.699 5.699 8 C 0.138 3.862 9 H 0.092 0.908 10 C -0.183 4.183 11 C 0.197 3.803 12 H 0.073 0.927 13 N -0.724 5.724 14 C -0.244 4.244 15 H 0.094 0.906 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.874 3.126 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.105 4.105 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.398 0.602 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.356 0.644 37 H 0.260 0.740 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.825 6.856 -11.401 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.041 4.041 3 C -0.183 4.183 4 C -0.254 4.254 5 C 0.337 3.663 6 O -0.430 6.430 7 N -0.349 5.349 8 C 0.033 3.967 9 H 0.110 0.890 10 C -0.225 4.225 11 C 0.085 3.915 12 H 0.091 0.909 13 N -0.365 5.365 14 C -0.374 4.374 15 H 0.112 0.888 16 C -0.188 4.188 17 N -0.576 5.576 18 Si 0.704 3.296 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.205 1.205 22 C -0.132 4.132 23 C -0.167 4.167 24 C -0.171 4.171 25 C -0.143 4.143 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.190 0.810 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.516 6.720 -11.171 16.749 hybrid contribution 1.144 1.134 -0.525 1.694 sum -9.372 7.854 -11.696 16.921 Atomic orbital electron populations 1.21012 0.90792 1.00697 1.04401 1.22517 0.96877 0.94340 0.90362 1.21013 1.00231 0.94332 1.02721 1.22453 1.00192 0.92228 1.10510 1.18489 0.87353 0.84237 0.76224 1.90726 1.13590 1.87765 1.50887 1.45638 1.10131 1.05049 1.74115 1.21648 0.95262 0.81937 0.97902 0.88994 1.24227 1.00606 1.00491 0.97138 1.20814 0.85835 0.95670 0.89157 0.90918 1.42459 1.24336 1.31808 1.37882 1.19085 1.01804 1.10676 1.05828 0.88831 1.24652 0.97365 0.98719 0.98057 1.69687 1.16265 1.41554 1.30123 0.86713 0.78309 0.84690 0.79852 1.20728 1.21380 1.20465 1.23544 0.97555 0.95988 0.96156 1.22608 1.00100 0.96734 0.97288 1.22756 0.97333 0.97355 0.99679 1.22499 0.96675 0.97206 0.97901 0.89877 0.93238 0.90094 0.90471 0.91030 0.91086 0.85917 0.76556 0.90791 0.90140 0.80992 0.92933 0.90785 0.90762 0.89864 0.92044 0.91084 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 8.33 36.00 0.30 -1.09 16 2 C -0.04 -0.49 6.11 -101.17 -0.62 -1.11 16 3 C -0.13 -1.17 9.98 36.00 0.36 -0.81 16 4 C -0.23 -3.36 9.63 -37.81 -0.36 -3.73 16 5 C 0.55 9.24 7.73 -12.66 -0.10 9.14 16 6 O -0.55 -10.14 12.71 5.27 0.07 -10.08 16 7 N -0.70 -11.80 4.92 -54.55 -0.27 -12.07 16 8 C 0.14 2.26 4.08 -67.48 -0.28 1.98 16 9 H 0.09 1.51 7.54 -51.93 -0.39 1.12 16 10 C -0.18 -3.20 7.68 -25.75 -0.20 -3.40 16 11 C 0.20 3.69 4.35 -67.48 -0.29 3.39 16 12 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 13 N -0.72 -16.22 4.57 -52.99 -0.24 -16.47 16 14 C -0.24 -6.63 10.46 -15.06 -0.16 -6.79 16 15 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 16 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 17 N -0.93 -28.46 13.97 55.49 0.78 -27.69 16 18 Si 0.87 21.04 27.73 -169.99 -4.71 16.32 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 22 C -0.13 -2.00 0.77 -154.71 -0.12 -2.12 16 23 C -0.13 -1.93 7.18 -26.28 -0.19 -2.12 16 24 C -0.13 -1.74 8.08 -25.75 -0.21 -1.95 16 25 C -0.10 -1.33 7.84 -26.28 -0.21 -1.53 16 26 H 0.08 1.18 7.21 -51.93 -0.37 0.80 16 27 H 0.05 0.48 7.94 -51.93 -0.41 0.07 16 28 H 0.08 1.09 7.23 -51.93 -0.38 0.71 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.56 8.05 -51.93 -0.42 0.15 16 31 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.40 6.89 6.18 -40.82 -0.25 6.64 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.36 7.75 2.99 -40.82 -0.12 7.63 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.26 7.51 -51.93 -0.39 0.87 16 40 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -30.60 342.76 -8.35 -38.96 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -6.97 Total: 15.85 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.16 Total: -10.00 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.26 Total: -56.23 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.60 -8.35 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202397509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.146 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds