Wall clock time and date at job start Tue Mar 31 2020 00:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50697 * 120.00393 * 2 1 4 4 C 1.32994 * 120.00078 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99739 * 359.97438 * 4 2 1 6 6 O 1.21610 * 120.00178 * 359.72753 * 5 4 2 7 7 N 1.34784 * 119.99985 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99893 * 179.72717 * 7 5 4 9 9 H 1.08991 * 112.88719 * 26.83832 * 8 7 5 10 10 C 1.53955 * 113.65676 * 255.49407 * 8 7 5 11 11 C 1.53952 * 87.29427 * 270.26312 * 10 8 7 12 12 H 1.08999 * 113.66330 * 220.79478 * 11 10 8 13 13 N 1.46496 * 113.66372 * 89.83363 * 11 10 8 14 14 C 1.36938 * 120.00135 * 104.50295 * 13 11 10 15 15 H 1.08002 * 120.00008 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99661 * 180.02562 * 14 13 11 17 17 N 1.31628 * 119.99289 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00434 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47031 * 90.00379 * 18 16 14 20 20 H 1.48502 * 109.47390 * 210.00063 * 18 16 14 21 21 H 1.48495 * 109.47156 * 330.00346 * 18 16 14 22 22 C 1.52906 * 113.66158 * 158.31142 * 8 7 5 23 23 C 1.52913 * 121.13858 * 323.84519 * 22 8 7 24 24 C 1.53955 * 86.78283 * 209.38119 * 23 22 8 25 25 C 1.52912 * 121.13914 * 215.28521 * 22 8 7 26 26 H 1.09004 * 109.47078 * 239.99613 * 1 2 3 27 27 H 1.08998 * 109.46954 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47590 * 119.99451 * 1 2 3 29 29 H 1.09000 * 109.47347 * 270.00571 * 3 2 1 30 30 H 1.09003 * 109.46583 * 30.00326 * 3 2 1 31 31 H 1.08996 * 109.47395 * 150.00144 * 3 2 1 32 32 H 1.08004 * 120.00348 * 179.97438 * 4 2 1 33 33 H 0.97005 * 119.99846 * 359.72505 * 7 5 4 34 34 H 1.08997 * 113.58538 * 24.86529 * 10 8 7 35 35 H 1.09001 * 113.57447 * 155.58694 * 10 8 7 36 36 H 0.97000 * 119.99767 * 284.50586 * 13 11 10 37 37 H 0.97003 * 119.99574 * 179.97438 * 17 16 14 38 38 H 1.08995 * 113.66578 * 323.85187 * 23 22 8 39 39 H 1.09002 * 113.66302 * 94.90976 * 23 22 8 40 40 H 1.09008 * 113.58018 * 270.13298 * 24 23 22 41 41 H 1.08998 * 113.65538 * 139.35415 * 24 23 22 42 42 H 1.08997 * 113.66355 * 265.09722 * 25 22 8 43 43 H 1.09002 * 113.65946 * 36.15228 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4364 -2.4257 -0.0005 6 8 0.2203 -2.4257 0.0050 7 7 2.1103 -3.5930 -0.0005 8 6 1.3777 -4.8616 0.0055 9 1 0.3880 -4.7818 -0.4439 10 6 1.3803 -5.5700 1.3724 11 6 2.6717 -6.2767 0.9219 12 1 2.7159 -7.3287 1.2037 13 7 3.8931 -5.5436 1.2638 14 6 4.6768 -5.9661 2.3043 15 1 4.3946 -6.8401 2.8726 16 6 5.8338 -5.2711 2.6285 17 7 6.5867 -5.6771 3.6289 18 14 6.3222 -3.7599 1.6452 19 1 5.7201 -2.5513 2.2633 20 1 7.8014 -3.6289 1.6409 21 1 5.8335 -3.8981 0.2498 22 6 2.1957 -6.0450 -0.5126 23 6 3.1933 -5.8752 -1.6590 24 6 2.9018 -7.3444 -2.0150 25 6 1.5402 -7.1668 -1.3189 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0276 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 2.4421 1.6198 -1.0276 30 1 1.6714 2.0646 0.5139 31 1 3.2129 1.1747 0.5138 32 1 3.2520 -1.1518 -0.0009 33 1 3.0803 -3.5930 -0.0045 34 1 1.5248 -4.8929 2.2143 35 1 0.5380 -6.2471 1.5141 36 1 4.1467 -4.7588 0.7532 37 1 7.3955 -5.1916 3.8553 38 1 2.8675 -5.1675 -2.4213 39 1 4.2165 -5.7005 -1.3263 40 1 3.5593 -8.0537 -1.5122 41 1 2.8231 -7.5274 -3.0867 42 1 1.2427 -8.0237 -0.7146 43 1 0.7498 -6.8220 -1.9857 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202397509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:57 Heat of formation + Delta-G solvation = 16.616187 kcal Electronic energy + Delta-G solvation = -22614.015546 eV Core-core repulsion = 19467.524920 eV Total energy + Delta-G solvation = -3146.490626 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05222 -40.31808 -36.88836 -36.35537 -35.39261 -33.88964 -32.40324 -29.08409 -28.62896 -26.81659 -26.26709 -25.49692 -24.12623 -22.27344 -21.45487 -20.59840 -19.62936 -18.52123 -18.05364 -17.01258 -16.70294 -16.47028 -16.09135 -15.90595 -15.46954 -15.13830 -14.93947 -14.61264 -14.54411 -13.89785 -13.78617 -13.52010 -13.36043 -13.22793 -13.17213 -12.91339 -12.74161 -12.71860 -12.58336 -12.43089 -12.14466 -11.97021 -11.87513 -11.33301 -11.19283 -10.93588 -10.74160 -10.60033 -10.24926 -9.76473 -9.33031 -8.05052 -5.39099 0.37354 1.28816 1.35644 1.41980 2.15425 2.28184 2.44025 3.24300 3.26060 3.53585 3.70000 3.79367 3.88960 3.92751 3.93019 4.04444 4.15518 4.23512 4.52280 4.55263 4.61870 4.67614 4.75066 4.77114 4.84799 4.88868 4.90027 4.93759 5.00824 5.06979 5.12263 5.13784 5.18105 5.19961 5.50259 5.52117 5.56594 5.58334 5.67854 5.77519 6.19380 6.53719 7.02995 7.22858 7.78272 7.96812 9.16261 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012049 B = 0.007376 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.337562 B = 3795.149892 C = 5338.702900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.020 4.020 3 C -0.126 4.126 4 C -0.265 4.265 5 C 0.541 3.459 6 O -0.572 6.572 7 N -0.703 5.703 8 C 0.142 3.858 9 H 0.098 0.902 10 C -0.178 4.178 11 C 0.179 3.821 12 H 0.063 0.937 13 N -0.724 5.724 14 C -0.230 4.230 15 H 0.058 0.942 16 C -0.060 4.060 17 N -0.981 5.981 18 Si 0.939 3.061 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.247 1.247 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.093 4.093 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.396 0.604 34 H 0.043 0.957 35 H 0.103 0.897 36 H 0.361 0.639 37 H 0.258 0.742 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.947 8.598 -14.029 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.022 4.022 3 C -0.182 4.182 4 C -0.286 4.286 5 C 0.332 3.668 6 O -0.455 6.455 7 N -0.352 5.352 8 C 0.037 3.963 9 H 0.116 0.884 10 C -0.220 4.220 11 C 0.069 3.931 12 H 0.081 0.919 13 N -0.366 5.366 14 C -0.360 4.360 15 H 0.076 0.924 16 C -0.252 4.252 17 N -0.631 5.631 18 Si 0.766 3.234 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.172 1.172 22 C -0.122 4.122 23 C -0.169 4.169 24 C -0.166 4.166 25 C -0.131 4.131 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.231 0.769 34 H 0.062 0.938 35 H 0.121 0.879 36 H 0.196 0.804 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.690 8.452 -13.841 19.992 hybrid contribution 1.378 0.552 0.351 1.526 sum -10.312 9.004 -13.490 19.219 Atomic orbital electron populations 1.20987 0.90953 1.02142 1.02778 1.22928 0.97024 0.95284 0.87005 1.21115 1.00110 0.92724 1.04265 1.22489 1.00688 0.91682 1.13694 1.18958 0.87295 0.84970 0.75530 1.90709 1.14504 1.88128 1.52142 1.45707 1.09946 1.05369 1.74223 1.21629 0.95724 0.82183 0.96783 0.88440 1.24178 1.00519 1.00358 0.96928 1.21034 0.84919 0.94812 0.92353 0.91888 1.42335 1.25061 1.32389 1.36860 1.19015 1.01952 1.09022 1.06057 0.92360 1.25450 0.97662 1.02495 0.99594 1.69877 1.17044 1.43584 1.32588 0.85644 0.77413 0.80421 0.79924 1.19988 1.21998 1.17156 1.23402 0.97913 0.96525 0.94373 1.22653 0.98409 0.98584 0.97238 1.22722 0.97055 0.95574 1.01219 1.22551 0.97036 0.96080 0.97426 0.91958 0.90209 0.91254 0.88425 0.89227 0.90854 0.84968 0.76877 0.93829 0.87860 0.80368 0.93333 0.89154 0.93122 0.91143 0.89527 0.90263 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 8.33 71.23 0.59 -1.98 16 2 C -0.02 -0.46 6.11 -17.62 -0.11 -0.57 16 3 C -0.13 -1.87 9.98 71.24 0.71 -1.16 16 4 C -0.26 -7.24 9.63 23.43 0.23 -7.02 16 5 C 0.54 17.82 7.73 86.57 0.67 18.49 16 6 O -0.57 -20.85 12.71 -4.06 -0.05 -20.90 16 7 N -0.70 -23.05 4.92 -444.75 -2.19 -25.24 16 8 C 0.14 4.47 4.08 45.28 0.18 4.65 16 9 H 0.10 3.00 7.54 -2.39 -0.02 2.99 16 10 C -0.18 -6.20 7.68 31.23 0.24 -5.96 16 11 C 0.18 6.68 4.35 45.28 0.20 6.88 16 12 H 0.06 2.46 8.12 -2.39 -0.02 2.44 16 13 N -0.72 -32.73 4.57 -321.57 -1.47 -34.20 16 14 C -0.23 -12.87 10.46 84.03 0.88 -11.99 16 15 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 16 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 17 N -0.98 -62.28 13.97 21.65 0.30 -61.98 16 18 Si 0.94 43.69 27.73 68.60 1.90 45.60 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.25 -10.08 6.52 99.48 0.65 -9.43 16 22 C -0.12 -3.49 0.77 -52.31 -0.04 -3.53 16 23 C -0.13 -3.60 7.18 30.89 0.22 -3.38 16 24 C -0.13 -2.98 8.08 31.23 0.25 -2.73 16 25 C -0.09 -2.07 7.84 30.88 0.24 -1.82 16 26 H 0.06 1.72 7.21 -2.38 -0.02 1.70 16 27 H 0.08 1.31 7.94 -2.39 -0.02 1.29 16 28 H 0.07 1.78 7.23 -2.39 -0.02 1.76 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.05 8.05 -2.39 -0.02 1.03 16 31 H 0.07 1.11 8.07 -2.39 -0.02 1.09 16 32 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 33 H 0.40 13.23 6.18 -92.70 -0.57 12.66 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.36 15.51 2.99 -92.71 -0.28 15.23 16 37 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 1.64 7.51 -2.39 -0.02 1.62 16 40 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -68.95 342.76 3.32 -65.63 By element: Atomic # 1 Polarization: 44.16 SS G_CDS: 0.09 Total: 44.25 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 4.74 Total: -13.16 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -3.36 Total: -121.41 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.90 Total: 45.60 kcal Total: -68.95 3.32 -65.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202397509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.245 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds