Wall clock time and date at job start Tue Mar 31 2020 00:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50704 * 120.00122 * 2 1 4 4 C 1.32995 * 120.00257 * 180.02562 * 2 1 3 5 5 C 1.47108 * 119.99499 * 5.63444 * 4 2 1 6 6 O 1.21609 * 120.00246 * 354.69308 * 5 4 2 7 7 N 1.34776 * 119.99461 * 174.68909 * 5 4 2 8 8 C 1.46505 * 119.99806 * 180.02562 * 7 5 4 9 9 H 1.09002 * 112.94683 * 336.40770 * 8 7 5 10 10 C 1.53947 * 113.66526 * 107.81279 * 8 7 5 11 11 C 1.53949 * 87.29640 * 139.20711 * 10 8 7 12 12 H 1.08996 * 113.66433 * 220.79944 * 11 10 8 13 13 N 1.46502 * 113.74854 * 89.75105 * 11 10 8 14 14 C 1.36926 * 119.99827 * 107.77082 * 13 11 10 15 15 H 1.08005 * 120.00571 * 0.02562 * 14 13 11 16 16 C 1.38819 * 119.99831 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00111 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00023 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47169 * 60.00210 * 18 16 14 20 20 H 1.48498 * 109.47282 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47392 * 300.00493 * 18 16 14 22 22 C 1.52909 * 113.66052 * 205.00164 * 8 7 5 23 23 C 1.52913 * 121.13893 * 94.90945 * 22 8 7 24 24 C 1.53944 * 86.78314 * 209.37839 * 23 22 8 25 25 C 1.52903 * 121.13929 * 346.34234 * 22 8 7 26 26 H 1.08998 * 109.47415 * 238.11615 * 1 2 3 27 27 H 1.08996 * 109.47211 * 358.11655 * 1 2 3 28 28 H 1.09002 * 109.47602 * 118.11468 * 1 2 3 29 29 H 1.09007 * 109.47150 * 270.00207 * 3 2 1 30 30 H 1.08999 * 109.46869 * 29.99997 * 3 2 1 31 31 H 1.09000 * 109.47137 * 150.00291 * 3 2 1 32 32 H 1.07995 * 120.00315 * 185.63095 * 4 2 1 33 33 H 0.96994 * 120.00764 * 0.02562 * 7 5 4 34 34 H 1.09003 * 113.57886 * 24.60446 * 10 8 7 35 35 H 1.08999 * 113.57882 * 253.80804 * 10 8 7 36 36 H 0.96997 * 119.99473 * 287.76800 * 13 11 10 37 37 H 0.96990 * 120.00222 * 179.97438 * 17 16 14 38 38 H 1.09000 * 113.66469 * 94.90008 * 23 22 8 39 39 H 1.09000 * 113.65681 * 323.85167 * 23 22 8 40 40 H 1.08996 * 113.58280 * 139.33576 * 24 23 22 41 41 H 1.09001 * 113.58172 * 270.12893 * 24 23 22 42 42 H 1.09003 * 113.66015 * 36.15211 * 25 22 8 43 43 H 1.08997 * 113.66433 * 265.09591 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4417 -2.4226 -0.1262 6 8 0.2256 -2.4271 -0.1324 7 7 2.1205 -3.5819 -0.2345 8 6 1.3933 -4.8475 -0.3602 9 1 0.3818 -4.7983 0.0430 10 6 1.4679 -5.4658 -1.7680 11 6 1.6375 -6.8322 -1.0795 12 1 2.3737 -7.4761 -1.5606 13 7 0.3714 -7.5177 -0.8088 14 6 0.0166 -8.6164 -1.5448 15 1 0.6704 -8.9781 -2.3248 16 6 -1.1828 -9.2663 -1.2879 17 7 -1.9794 -8.8259 -0.3371 18 14 -1.6672 -10.7648 -2.2925 19 1 -0.6415 -11.8256 -2.1251 20 1 -2.9831 -11.2699 -1.8252 21 1 -1.7621 -10.3900 -3.7263 22 6 2.1876 -6.0620 0.1215 23 6 2.0277 -6.5977 1.5448 24 6 3.4884 -7.0720 1.4376 25 6 3.6918 -5.9710 0.3808 26 1 -0.3634 -0.5428 0.8726 27 1 -0.3633 1.0271 0.0338 28 1 -0.3634 -0.4843 -0.9064 29 1 2.4422 1.6198 -1.0277 30 1 1.6714 2.0647 0.5138 31 1 3.2129 1.1748 0.5138 32 1 3.2480 -1.1540 0.0912 33 1 3.0904 -3.5784 -0.2292 34 1 2.3436 -5.1521 -2.3362 35 1 0.5407 -5.3748 -2.3339 36 1 -0.2156 -7.1931 -0.1080 37 1 -2.8176 -9.2797 -0.1578 38 1 1.3081 -7.4122 1.6275 39 1 1.8746 -5.8179 2.2909 40 1 4.0660 -6.9142 2.3483 41 1 3.5909 -8.0818 1.0404 42 1 4.0063 -5.0152 0.7999 43 1 4.3015 -6.2849 -0.4663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202397510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:01 Heat of formation + Delta-G solvation = 7.513370 kcal Electronic energy + Delta-G solvation = -22002.389169 eV Core-core repulsion = 18855.503815 eV Total energy + Delta-G solvation = -3146.885354 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89159 -40.28209 -36.61519 -36.34042 -35.49165 -34.01877 -31.63502 -28.97950 -28.60363 -26.75504 -26.22721 -25.49697 -24.33379 -22.04296 -21.68790 -19.99198 -19.35636 -18.55142 -17.95079 -17.18884 -16.69492 -16.30343 -15.91834 -15.88608 -15.36972 -15.11725 -14.80847 -14.57729 -14.26495 -13.83138 -13.55064 -13.38726 -13.25158 -13.20070 -13.09979 -12.80012 -12.69986 -12.66957 -12.56798 -12.36770 -12.23412 -11.99479 -11.79346 -11.29873 -11.18293 -10.89718 -10.73728 -10.52901 -10.15642 -9.67307 -9.02466 -7.95836 -5.25385 0.45429 1.45541 1.49246 1.55181 2.32101 2.38782 2.54006 3.35270 3.42435 3.56464 3.77526 3.86471 3.95246 3.97925 4.02980 4.18872 4.20997 4.32847 4.58076 4.59921 4.64804 4.70502 4.78544 4.82919 4.84445 4.89075 4.92771 5.03728 5.09334 5.12048 5.13475 5.19609 5.24791 5.32801 5.48373 5.51805 5.55446 5.60126 5.67840 5.77838 6.25572 6.73806 7.30674 7.40567 8.06679 8.29478 9.27431 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.004169 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.730647 B = 6714.376950 C = 7532.801335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.032 4.032 3 C -0.120 4.120 4 C -0.242 4.242 5 C 0.527 3.473 6 O -0.592 6.592 7 N -0.697 5.697 8 C 0.148 3.852 9 H 0.065 0.935 10 C -0.171 4.171 11 C 0.179 3.821 12 H 0.073 0.927 13 N -0.715 5.715 14 C -0.244 4.244 15 H 0.081 0.919 16 C -0.076 4.076 17 N -0.971 5.971 18 Si 0.976 3.024 19 H -0.274 1.274 20 H -0.298 1.298 21 H -0.279 1.279 22 C -0.114 4.114 23 C -0.136 4.136 24 C -0.124 4.124 25 C -0.094 4.094 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.161 0.839 33 H 0.414 0.586 34 H 0.102 0.898 35 H 0.034 0.966 36 H 0.372 0.628 37 H 0.251 0.749 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.007 17.546 2.037 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.176 4.176 4 C -0.263 4.263 5 C 0.319 3.681 6 O -0.474 6.474 7 N -0.348 5.348 8 C 0.043 3.957 9 H 0.083 0.917 10 C -0.213 4.213 11 C 0.068 3.932 12 H 0.091 0.909 13 N -0.352 5.352 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.268 4.268 17 N -0.621 5.621 18 Si 0.804 3.196 19 H -0.200 1.200 20 H -0.224 1.224 21 H -0.205 1.205 22 C -0.116 4.116 23 C -0.173 4.173 24 C -0.162 4.162 25 C -0.131 4.131 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.179 0.821 33 H 0.253 0.747 34 H 0.121 0.879 35 H 0.053 0.947 36 H 0.203 0.797 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.165 17.357 1.908 23.795 hybrid contribution -1.149 -1.075 -0.206 1.587 sum 15.017 16.281 1.702 22.214 Atomic orbital electron populations 1.20977 0.92600 1.01636 1.02210 1.22890 0.96074 0.96153 0.88311 1.21069 1.00361 0.92196 1.04014 1.22515 1.01459 0.90208 1.12104 1.19389 0.87241 0.85813 0.75670 1.90790 1.16149 1.87964 1.52547 1.45713 1.10539 1.04978 1.73589 1.21841 0.95303 0.81993 0.96600 0.91693 1.24165 1.01132 0.99446 0.96550 1.20904 0.87788 0.90883 0.93673 0.90873 1.42237 1.19735 1.32015 1.41204 1.19659 1.02134 1.03702 1.12051 0.90151 1.25609 0.97671 1.02975 1.00552 1.69835 1.12869 1.43891 1.35521 0.85181 0.76816 0.79443 0.78125 1.19963 1.22422 1.20475 1.23450 0.98206 0.94560 0.95415 1.22668 0.98474 1.00063 0.96141 1.22689 0.94909 0.98678 0.99907 1.22555 0.91353 0.99882 0.99349 0.92401 0.90565 0.92530 0.89002 0.90067 0.89366 0.82136 0.74744 0.87921 0.94746 0.79659 0.94078 0.94138 0.90292 0.89598 0.91177 0.87537 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 8.34 71.23 0.59 -2.23 16 2 C -0.03 -0.61 6.11 -17.62 -0.11 -0.72 16 3 C -0.12 -1.20 9.99 71.24 0.71 -0.48 16 4 C -0.24 -4.92 9.63 23.43 0.23 -4.70 16 5 C 0.53 15.88 7.73 86.57 0.67 16.55 16 6 O -0.59 -23.76 12.70 -4.06 -0.05 -23.81 16 7 N -0.70 -18.63 5.25 -444.75 -2.33 -20.96 16 8 C 0.15 5.20 4.04 45.28 0.18 5.38 16 9 H 0.06 2.94 7.46 -2.39 -0.02 2.92 16 10 C -0.17 -6.27 7.69 31.23 0.24 -6.03 16 11 C 0.18 7.14 4.36 45.28 0.20 7.33 16 12 H 0.07 2.81 8.10 -2.39 -0.02 2.79 16 13 N -0.72 -37.28 4.86 -321.55 -1.56 -38.84 16 14 C -0.24 -13.82 9.97 84.04 0.84 -12.98 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 17 N -0.97 -61.62 13.06 21.65 0.28 -61.34 16 18 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 C -0.11 -3.62 0.92 -52.31 -0.05 -3.67 16 23 C -0.14 -4.49 7.62 30.88 0.24 -4.26 16 24 C -0.12 -3.13 8.08 31.23 0.25 -2.87 16 25 C -0.09 -2.02 7.15 30.89 0.22 -1.80 16 26 H 0.06 1.67 7.31 -2.39 -0.02 1.65 16 27 H 0.08 1.35 7.93 -2.39 -0.02 1.33 16 28 H 0.06 1.67 7.15 -2.39 -0.02 1.65 16 29 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 0.67 8.03 -2.39 -0.02 0.65 16 31 H 0.09 0.60 8.06 -2.39 -0.02 0.58 16 32 H 0.16 1.96 8.04 -2.91 -0.02 1.94 16 33 H 0.41 7.63 7.02 -92.71 -0.65 6.98 16 34 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.37 21.38 7.61 -92.71 -0.71 20.67 16 37 H 0.25 15.47 8.31 -92.72 -0.77 14.70 16 38 H 0.04 1.67 7.58 -2.39 -0.02 1.66 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.11 1.70 7.03 -2.39 -0.02 1.68 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.60 348.30 2.69 -71.91 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.35 Total: 38.33 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.68 Total: -14.48 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -3.61 Total: -121.14 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -74.60 2.69 -71.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202397510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.421 kcal (2) G-P(sol) polarization free energy of solvation -74.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds