Wall clock time and date at job start Tue Mar 31 2020 00:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 C 1.53000 * 109.46912 * 125.00530 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00140 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99767 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00054 * 179.97438 * 7 5 4 9 9 H 1.09001 * 112.88782 * 334.67065 * 8 7 5 10 10 C 1.53955 * 113.66093 * 106.00903 * 8 7 5 11 11 C 1.53950 * 87.29182 * 139.20899 * 10 8 7 12 12 H 1.08997 * 113.66501 * 89.83442 * 11 10 8 13 13 N 1.46506 * 113.66454 * 220.79511 * 11 10 8 14 14 C 1.36939 * 119.99753 * 255.50006 * 13 11 10 15 15 H 1.07992 * 120.00150 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99420 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00466 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99666 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47313 * 59.99356 * 18 16 14 20 20 H 1.48499 * 109.46938 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46663 * 299.99539 * 18 16 14 22 22 C 1.52907 * 113.66511 * 203.32013 * 8 7 5 23 23 C 1.52902 * 121.14234 * 94.90735 * 22 8 7 24 24 C 1.53944 * 86.78483 * 209.37964 * 23 22 8 25 25 C 1.52914 * 121.13700 * 346.34415 * 22 8 7 26 26 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 30 30 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 31 31 H 1.09001 * 109.47194 * 299.99742 * 4 3 2 32 32 H 1.08992 * 109.47399 * 59.99914 * 4 3 2 33 33 H 0.97005 * 119.99680 * 359.97438 * 7 5 4 34 34 H 1.08997 * 113.58233 * 253.81154 * 10 8 7 35 35 H 1.09002 * 113.57872 * 24.60593 * 10 8 7 36 36 H 0.96999 * 120.00094 * 75.49020 * 13 11 10 37 37 H 0.97003 * 119.99859 * 180.02562 * 17 16 14 38 38 H 1.09003 * 113.65924 * 323.85217 * 23 22 8 39 39 H 1.09005 * 113.66430 * 94.90528 * 23 22 8 40 40 H 1.09004 * 113.58109 * 270.13024 * 24 23 22 41 41 H 1.09009 * 113.65450 * 139.34790 * 24 23 22 42 42 H 1.08997 * 113.66218 * 265.09994 * 25 22 8 43 43 H 1.08995 * 113.66229 * 36.05729 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6384 1.1819 6 8 3.5696 3.4648 0.3216 7 7 4.7053 2.8871 2.1377 8 6 5.4377 4.1558 2.1378 9 1 5.5032 4.6075 1.1480 10 6 4.9787 5.1342 3.2342 11 6 6.4645 5.4740 3.4509 12 1 6.8198 6.2976 2.8316 13 7 6.8347 5.6206 4.8608 14 6 7.0390 6.8674 5.3890 15 1 6.9277 7.7426 4.7661 16 6 7.3892 7.0063 6.7250 17 7 7.5243 5.9397 7.4843 18 14 7.6687 8.7071 7.4453 19 1 6.4265 9.5103 7.3146 20 1 8.0290 8.5836 8.8806 21 1 8.7722 9.3793 6.7135 22 6 6.7770 4.0912 2.8727 23 6 8.0804 3.8237 2.1194 24 6 8.5952 3.1731 3.4161 25 6 7.1231 2.9128 3.7837 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 2.4774 1.2355 2.1130 32 1 3.7400 0.5065 1.0920 33 1 4.8803 2.2259 2.8256 34 1 4.3911 5.9700 2.8546 35 1 4.5143 4.6437 4.0897 36 1 6.9348 4.8345 5.4203 37 1 7.7687 6.0369 8.4180 38 1 7.9713 3.1228 1.2917 39 1 8.6187 4.7297 1.8408 40 1 9.0948 3.8726 4.0864 41 1 9.1707 2.2624 3.2500 42 1 6.8964 3.0911 4.8348 43 1 6.7436 1.9562 3.4247 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202590390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:04 Heat of formation + Delta-G solvation = 26.159551 kcal Electronic energy + Delta-G solvation = -21724.858085 eV Core-core repulsion = 18578.781290 eV Total energy + Delta-G solvation = -3146.076795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58744 -39.05083 -35.60063 -34.82007 -34.08396 -32.49969 -30.85614 -29.73231 -25.51769 -25.33091 -24.16760 -23.94066 -21.90831 -20.45498 -20.12752 -20.00064 -17.95352 -17.23999 -16.71258 -16.15361 -15.90954 -15.13733 -14.81567 -14.71610 -14.50871 -13.96189 -13.62980 -13.07029 -12.89668 -12.64320 -12.48085 -12.25480 -12.08116 -11.82705 -11.51871 -11.28059 -11.23710 -11.20384 -10.91362 -10.79474 -10.71390 -10.23027 -10.04808 -9.97262 -9.84772 -9.69434 -9.51429 -9.38685 -8.85954 -8.62188 -6.98397 -5.81220 -3.09484 2.01907 2.73712 3.34706 3.42372 3.47154 3.47962 4.55186 4.60952 4.71512 4.79583 4.92916 4.94219 5.03989 5.08797 5.14141 5.24084 5.26440 5.40558 5.45365 5.61537 5.68390 5.76640 5.89421 5.92141 5.96463 5.97743 5.99443 6.05798 6.23268 6.31742 6.37926 6.39922 6.51290 6.52917 6.60418 6.64546 6.84924 6.93042 7.07749 7.67969 7.68767 8.35596 8.37932 9.49467 10.06111 10.41237 11.41094 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.003523 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.533291 B = 7946.702512 C = 8391.287955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.079 4.079 4 C -0.138 4.138 5 C 0.509 3.491 6 O -0.548 6.548 7 N -0.712 5.712 8 C 0.130 3.870 9 H 0.108 0.892 10 C -0.174 4.174 11 C 0.192 3.808 12 H 0.079 0.921 13 N -0.707 5.707 14 C -0.243 4.243 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.117 4.117 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.399 0.601 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.601 -12.876 -12.229 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.117 4.117 4 C -0.178 4.178 5 C 0.296 3.704 6 O -0.425 6.425 7 N -0.363 5.363 8 C 0.025 3.975 9 H 0.126 0.874 10 C -0.216 4.216 11 C 0.079 3.921 12 H 0.097 0.903 13 N -0.346 5.346 14 C -0.374 4.374 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.121 4.121 23 C -0.164 4.164 24 C -0.168 4.168 25 C -0.155 4.155 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.234 0.766 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.222 0.778 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.701 -12.078 -12.751 18.798 hybrid contribution 0.186 0.245 1.051 1.095 sum -6.515 -11.833 -11.700 17.870 Atomic orbital electron populations 1.23881 0.96013 1.01866 1.01382 1.22995 0.96100 0.98409 0.99709 1.20497 0.97838 0.95287 0.98044 1.21635 0.99062 0.95922 1.01148 1.20686 0.79813 0.88749 0.81182 1.90681 1.65756 1.48396 1.37717 1.46033 1.40109 1.20157 1.29960 1.22271 0.91799 0.84020 0.99381 0.87408 1.24265 1.01398 0.98331 0.97630 1.21095 0.91388 0.91979 0.87594 0.90266 1.42337 1.81334 1.06368 1.04525 1.19254 1.39369 0.85375 0.93421 0.91123 1.24733 1.02370 0.97092 0.96528 1.69640 1.54499 1.27286 1.06682 0.86272 0.78019 0.83868 0.78055 1.21247 1.21725 1.21236 1.23589 0.92450 0.98834 0.97219 1.22703 0.96640 1.00518 0.96499 1.22731 0.95943 1.00308 0.97775 1.22431 0.96762 0.95973 1.00301 0.88500 0.88580 0.87385 0.90711 0.90260 0.88889 0.88974 0.76621 0.92209 0.90214 0.77770 0.93421 0.91019 0.91481 0.89153 0.92509 0.90289 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 14.32 29.01 0.42 -1.08 16 2 C -0.15 -1.24 9.52 -36.02 -0.34 -1.58 16 3 C -0.08 -0.76 4.95 -27.88 -0.14 -0.90 16 4 C -0.14 -1.27 5.68 -27.88 -0.16 -1.43 16 5 C 0.51 6.76 7.83 -10.98 -0.09 6.68 16 6 O -0.55 -9.40 15.60 5.56 0.09 -9.31 16 7 N -0.71 -9.18 5.27 -53.37 -0.28 -9.46 16 8 C 0.13 1.99 4.09 -67.48 -0.28 1.72 16 9 H 0.11 1.76 7.50 -51.93 -0.39 1.37 16 10 C -0.17 -3.09 7.68 -25.74 -0.20 -3.29 16 11 C 0.19 3.72 4.36 -67.38 -0.29 3.42 16 12 H 0.08 1.56 8.12 -51.93 -0.42 1.14 16 13 N -0.71 -16.89 5.36 -52.89 -0.28 -17.18 16 14 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 18 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.12 -1.86 1.07 -154.61 -0.17 -2.02 16 23 C -0.13 -1.82 7.84 -26.29 -0.21 -2.02 16 24 C -0.13 -1.95 8.08 -25.76 -0.21 -2.16 16 25 C -0.12 -1.73 6.77 -26.28 -0.18 -1.91 16 26 H 0.10 0.75 7.84 -52.49 -0.41 0.34 16 27 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 28 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 30 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.40 4.33 6.98 -40.82 -0.28 4.05 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.39 9.67 5.87 -40.82 -0.24 9.43 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 41 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 42 H 0.08 1.36 6.43 -51.93 -0.33 1.03 16 43 H 0.07 0.85 6.99 -51.93 -0.36 0.49 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -30.59 350.81 -8.61 -39.21 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.04 Total: 12.75 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -2.08 Total: -11.71 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.16 Total: -53.29 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.59 -8.61 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202590390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.366 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds