Wall clock time and date at job start Tue Mar 31 2020 00:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 C 1.53000 * 109.46912 * 125.00530 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00140 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99767 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00054 * 179.97438 * 7 5 4 9 9 H 1.09001 * 112.88782 * 334.67065 * 8 7 5 10 10 C 1.53955 * 113.66093 * 106.00903 * 8 7 5 11 11 C 1.53950 * 87.29182 * 139.20899 * 10 8 7 12 12 H 1.08997 * 113.66501 * 89.83442 * 11 10 8 13 13 N 1.46506 * 113.66454 * 220.79511 * 11 10 8 14 14 C 1.36939 * 119.99753 * 255.50006 * 13 11 10 15 15 H 1.07992 * 120.00150 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99420 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00466 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99666 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47313 * 59.99356 * 18 16 14 20 20 H 1.48499 * 109.46938 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46663 * 299.99539 * 18 16 14 22 22 C 1.52907 * 113.66511 * 203.32013 * 8 7 5 23 23 C 1.52902 * 121.14234 * 94.90735 * 22 8 7 24 24 C 1.53944 * 86.78483 * 209.37964 * 23 22 8 25 25 C 1.52914 * 121.13700 * 346.34415 * 22 8 7 26 26 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 30 30 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 31 31 H 1.09001 * 109.47194 * 299.99742 * 4 3 2 32 32 H 1.08992 * 109.47399 * 59.99914 * 4 3 2 33 33 H 0.97005 * 119.99680 * 359.97438 * 7 5 4 34 34 H 1.08997 * 113.58233 * 253.81154 * 10 8 7 35 35 H 1.09002 * 113.57872 * 24.60593 * 10 8 7 36 36 H 0.96999 * 120.00094 * 75.49020 * 13 11 10 37 37 H 0.97003 * 119.99859 * 180.02562 * 17 16 14 38 38 H 1.09003 * 113.65924 * 323.85217 * 23 22 8 39 39 H 1.09005 * 113.66430 * 94.90528 * 23 22 8 40 40 H 1.09004 * 113.58109 * 270.13024 * 24 23 22 41 41 H 1.09009 * 113.65450 * 139.34790 * 24 23 22 42 42 H 1.08997 * 113.66218 * 265.09994 * 25 22 8 43 43 H 1.08995 * 113.66229 * 36.05729 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7882 2.6384 1.1819 6 8 3.5696 3.4648 0.3216 7 7 4.7053 2.8871 2.1377 8 6 5.4377 4.1558 2.1378 9 1 5.5032 4.6075 1.1480 10 6 4.9787 5.1342 3.2342 11 6 6.4645 5.4740 3.4509 12 1 6.8198 6.2976 2.8316 13 7 6.8347 5.6206 4.8608 14 6 7.0390 6.8674 5.3890 15 1 6.9277 7.7426 4.7661 16 6 7.3892 7.0063 6.7250 17 7 7.5243 5.9397 7.4843 18 14 7.6687 8.7071 7.4453 19 1 6.4265 9.5103 7.3146 20 1 8.0290 8.5836 8.8806 21 1 8.7722 9.3793 6.7135 22 6 6.7770 4.0912 2.8727 23 6 8.0804 3.8237 2.1194 24 6 8.5952 3.1731 3.4161 25 6 7.1231 2.9128 3.7837 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 2.4774 1.2355 2.1130 32 1 3.7400 0.5065 1.0920 33 1 4.8803 2.2259 2.8256 34 1 4.3911 5.9700 2.8546 35 1 4.5143 4.6437 4.0897 36 1 6.9348 4.8345 5.4203 37 1 7.7687 6.0369 8.4180 38 1 7.9713 3.1228 1.2917 39 1 8.6187 4.7297 1.8408 40 1 9.0948 3.8726 4.0864 41 1 9.1707 2.2624 3.2500 42 1 6.8964 3.0911 4.8348 43 1 6.7436 1.9562 3.4247 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202590390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:04 Heat of formation + Delta-G solvation = 7.574660 kcal Electronic energy + Delta-G solvation = -21725.663986 eV Core-core repulsion = 18578.781290 eV Total energy + Delta-G solvation = -3146.882696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.88507 -40.19388 -36.39010 -36.19612 -35.65724 -34.02561 -32.03573 -31.19636 -26.82760 -26.63548 -25.65086 -25.22959 -23.34403 -21.78455 -21.23156 -20.62830 -19.63503 -18.73468 -17.90842 -17.46858 -16.75385 -16.45062 -16.33282 -16.04431 -15.61551 -15.32961 -14.84556 -14.49872 -14.36461 -13.77278 -13.54357 -13.40855 -13.17716 -13.12059 -13.01471 -12.86906 -12.71219 -12.34990 -12.24206 -12.07612 -11.96787 -11.87281 -11.85753 -11.31859 -11.22407 -10.98650 -10.78238 -10.68764 -10.18511 -9.84811 -8.95432 -7.94412 -5.21309 1.42114 1.47133 1.48979 1.54990 1.69482 2.29468 2.57241 3.36436 3.49588 3.61776 3.74011 3.81023 3.94149 4.01564 4.02230 4.13049 4.22432 4.27653 4.40006 4.49181 4.57111 4.65816 4.71512 4.77458 4.81638 4.86264 4.97133 5.02363 5.09585 5.10786 5.14064 5.21493 5.24947 5.38885 5.51089 5.52825 5.63965 5.72008 5.78465 5.94066 6.28225 6.65071 7.32683 7.35639 8.11626 8.36783 9.28344 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025576 B = 0.003523 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.533291 B = 7946.702512 C = 8391.287955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.078 4.078 4 C -0.128 4.128 5 C 0.507 3.493 6 O -0.590 6.590 7 N -0.704 5.704 8 C 0.150 3.850 9 H 0.101 0.899 10 C -0.170 4.170 11 C 0.173 3.827 12 H 0.071 0.929 13 N -0.716 5.716 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.070 4.070 17 N -0.966 5.966 18 Si 0.968 3.032 19 H -0.281 1.281 20 H -0.295 1.295 21 H -0.279 1.279 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.110 4.110 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.412 0.588 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.379 0.621 37 H 0.251 0.749 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 -14.842 -13.318 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.174 4.174 3 C -0.116 4.116 4 C -0.167 4.167 5 C 0.295 3.705 6 O -0.471 6.471 7 N -0.355 5.355 8 C 0.044 3.956 9 H 0.119 0.881 10 C -0.212 4.212 11 C 0.062 3.938 12 H 0.089 0.911 13 N -0.355 5.355 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.263 4.263 17 N -0.616 5.616 18 Si 0.797 3.203 19 H -0.208 1.208 20 H -0.221 1.221 21 H -0.205 1.205 22 C -0.112 4.112 23 C -0.154 4.154 24 C -0.167 4.167 25 C -0.147 4.147 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.146 0.854 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.249 0.751 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.214 0.786 37 H 0.060 0.940 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.983 -14.062 -13.875 20.952 hybrid contribution 0.215 0.871 1.309 1.587 sum -6.768 -13.191 -12.566 19.435 Atomic orbital electron populations 1.24041 0.96183 1.02383 1.00865 1.23015 0.96138 0.98161 1.00102 1.20447 0.97608 0.95698 0.97860 1.21660 0.99193 0.94210 1.01661 1.21431 0.79264 0.89648 0.80118 1.90671 1.66920 1.50118 1.39379 1.45908 1.39802 1.19349 1.30408 1.21853 0.91296 0.84577 0.97916 0.88066 1.24113 0.99792 0.98968 0.98370 1.21349 0.92688 0.94314 0.85426 0.91066 1.42424 1.81753 1.05086 1.06257 1.19611 1.37718 0.86679 0.93620 0.91039 1.25456 1.03390 1.00336 0.97096 1.69783 1.56287 1.29011 1.06543 0.85298 0.77996 0.80077 0.76904 1.20786 1.22144 1.20540 1.23352 0.93545 0.96819 0.97504 1.22708 0.95010 1.00773 0.96871 1.22642 0.96143 1.00684 0.97273 1.22477 0.96655 0.97097 0.98499 0.89182 0.87003 0.85418 0.92737 0.91318 0.87185 0.85842 0.75063 0.93037 0.91190 0.78624 0.94020 0.88276 0.92268 0.92801 0.89770 0.93059 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.65 14.32 67.78 0.97 -1.68 16 2 C -0.16 -2.11 9.52 25.65 0.24 -1.86 16 3 C -0.08 -1.38 4.95 29.85 0.15 -1.23 16 4 C -0.13 -1.97 5.68 29.85 0.17 -1.80 16 5 C 0.51 12.42 7.83 87.66 0.69 13.10 16 6 O -0.59 -19.79 15.60 -3.01 -0.05 -19.84 16 7 N -0.70 -16.44 5.27 -441.15 -2.33 -18.76 16 8 C 0.15 4.39 4.09 45.28 0.19 4.58 16 9 H 0.10 3.20 7.50 -2.39 -0.02 3.18 16 10 C -0.17 -6.09 7.68 31.23 0.24 -5.85 16 11 C 0.17 6.79 4.36 45.35 0.20 6.98 16 12 H 0.07 2.87 8.12 -2.39 -0.02 2.85 16 13 N -0.72 -35.12 5.36 -321.25 -1.72 -36.84 16 14 C -0.24 -13.47 9.98 84.03 0.84 -12.63 16 15 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 16 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 17 N -0.97 -58.00 13.06 21.65 0.28 -57.71 16 18 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 C -0.11 -3.32 1.07 -52.25 -0.06 -3.38 16 23 C -0.12 -3.11 7.84 30.88 0.24 -2.87 16 24 C -0.13 -3.69 8.08 31.23 0.25 -3.44 16 25 C -0.11 -3.05 6.77 30.88 0.21 -2.84 16 26 H 0.09 1.30 7.84 -2.91 -0.02 1.28 16 27 H 0.11 1.14 8.06 -2.91 -0.02 1.11 16 28 H 0.13 1.24 8.06 -2.91 -0.02 1.21 16 29 H 0.05 1.16 7.75 -2.39 -0.02 1.14 16 30 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.41 7.55 6.98 -92.70 -0.65 6.90 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.38 19.57 5.87 -92.71 -0.54 19.03 16 37 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.05 1.75 6.43 -2.39 -0.02 1.73 16 43 H 0.11 2.20 6.99 -2.39 -0.02 2.18 16 Total: -1.00 -67.83 350.81 2.81 -65.01 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.20 Total: 36.49 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 4.79 Total: -16.44 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -3.76 Total: -113.32 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -67.83 2.81 -65.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202590390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.588 kcal (2) G-P(sol) polarization free energy of solvation -67.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds