Wall clock time and date at job start Tue Mar 31 2020 00:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.52995 * 109.47164 * 124.99894 * 3 2 1 5 5 C 1.50707 * 109.47291 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99704 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99975 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99716 * 180.02562 * 7 5 4 9 9 H 1.09001 * 112.88745 * 336.34094 * 8 7 5 10 10 C 1.53952 * 113.66319 * 107.81053 * 8 7 5 11 11 C 1.53957 * 87.29467 * 89.73774 * 10 8 7 12 12 H 1.08996 * 113.65774 * 270.25711 * 11 10 8 13 13 N 1.46497 * 113.74591 * 139.21531 * 11 10 8 14 14 C 1.36938 * 120.00031 * 107.76955 * 13 11 10 15 15 H 1.08002 * 119.99622 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99967 * 179.97438 * 14 13 11 17 17 N 1.31614 * 120.00046 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99652 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47232 * 60.00540 * 18 16 14 20 20 H 1.48505 * 109.47109 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47413 * 300.00385 * 18 16 14 22 22 C 1.52909 * 113.66149 * 204.99910 * 8 7 5 23 23 C 1.52911 * 121.13956 * 144.70813 * 22 8 7 24 24 C 1.53948 * 86.78162 * 209.38038 * 23 22 8 25 25 C 1.52906 * 121.13740 * 36.14163 * 22 8 7 26 26 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 28 28 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 30 30 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 31 31 H 1.09000 * 109.47169 * 300.00250 * 4 3 2 32 32 H 1.09004 * 109.47281 * 60.00087 * 4 3 2 33 33 H 0.97000 * 120.00182 * 359.97438 * 7 5 4 34 34 H 1.08998 * 113.57684 * 204.33579 * 10 8 7 35 35 H 1.08992 * 113.57729 * 335.13160 * 10 8 7 36 36 H 0.96999 * 120.00085 * 287.77159 * 13 11 10 37 37 H 0.97003 * 119.99862 * 180.02562 * 17 16 14 38 38 H 1.08996 * 113.65799 * 323.85119 * 23 22 8 39 39 H 1.08998 * 113.66312 * 94.90856 * 23 22 8 40 40 H 1.09008 * 113.57852 * 270.13036 * 24 23 22 41 41 H 1.09004 * 113.65492 * 139.34894 * 24 23 22 42 42 H 1.09002 * 113.66577 * 265.09425 * 25 22 8 43 43 H 1.08997 * 113.66443 * 36.06010 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7881 2.6384 1.1820 6 8 3.5697 3.4648 0.3215 7 7 4.7051 2.8871 2.1379 8 6 5.4368 4.1562 2.1385 9 1 5.4770 4.6229 1.1543 10 6 5.0075 5.1164 3.2628 11 6 6.0849 4.4537 4.1406 12 1 5.7225 3.5931 4.7028 13 7 6.8353 5.4006 4.9691 14 6 6.6262 5.4421 6.3218 15 1 5.9083 4.7764 6.7778 16 6 7.3376 6.3389 7.1069 17 7 8.2127 7.1498 6.5512 18 14 7.0517 6.3959 8.9520 19 1 7.3693 5.0712 9.5433 20 1 7.9277 7.4313 9.5569 21 1 5.6306 6.7309 9.2227 22 6 6.7944 4.0816 2.8381 23 6 7.9906 4.8879 2.3312 24 6 8.8776 3.7645 2.8979 25 6 7.6653 2.8284 2.7425 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0045 28 1 1.8500 -0.9353 -0.0004 29 1 2.6212 1.4027 -0.9314 30 1 1.3585 2.1317 0.0896 31 1 2.4772 1.2355 2.1130 32 1 3.7399 0.5065 1.0921 33 1 4.8801 2.2260 2.8258 34 1 5.2093 6.1645 3.0418 35 1 3.9910 4.9460 3.6171 36 1 7.4803 5.9982 4.5595 37 1 8.7101 7.7762 7.0999 38 1 8.0324 4.9726 1.2453 39 1 8.1195 5.8446 2.8374 40 1 9.1748 3.9245 3.9344 41 1 9.7165 3.5023 2.2532 42 1 7.5344 2.1398 3.5773 43 1 7.6146 2.3334 1.7727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202590394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:11 Heat of formation + Delta-G solvation = 26.700173 kcal Electronic energy + Delta-G solvation = -21743.515221 eV Core-core repulsion = 18597.461870 eV Total energy + Delta-G solvation = -3146.053352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.60990 -39.05383 -35.62879 -34.94398 -34.02701 -32.33639 -30.84011 -29.69705 -25.50656 -25.21665 -24.14574 -24.05289 -22.03923 -20.67474 -20.00788 -19.92538 -17.94475 -17.21830 -16.77619 -15.97594 -15.87518 -15.12606 -14.91077 -14.75754 -14.36113 -13.87579 -13.67480 -13.39525 -12.77342 -12.58867 -12.49512 -12.24557 -11.99312 -11.77513 -11.70175 -11.34906 -11.24523 -11.24076 -10.88245 -10.82619 -10.59262 -10.21059 -10.13721 -9.88065 -9.81018 -9.65233 -9.50615 -9.36964 -8.85644 -8.65064 -6.98580 -5.81238 -3.09789 2.01361 2.71830 3.27174 3.41037 3.46011 3.46688 4.55010 4.58244 4.70722 4.80552 4.92229 5.03068 5.05593 5.09657 5.15312 5.26674 5.29079 5.39906 5.45012 5.60972 5.69983 5.75856 5.85929 5.95691 5.96857 6.01235 6.06514 6.12031 6.20297 6.30941 6.37538 6.42943 6.52076 6.52541 6.57795 6.66793 6.89318 6.94302 7.07202 7.65291 7.66654 8.34421 8.37618 9.49049 10.06550 10.41352 11.40964 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.003722 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.099385 B = 7520.698455 C = 8269.716061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.079 4.079 4 C -0.136 4.136 5 C 0.511 3.489 6 O -0.547 6.547 7 N -0.704 5.704 8 C 0.128 3.872 9 H 0.094 0.906 10 C -0.175 4.175 11 C 0.192 3.808 12 H 0.075 0.925 13 N -0.708 5.708 14 C -0.245 4.245 15 H 0.070 0.930 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.131 4.131 25 C -0.125 4.125 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.400 0.600 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 -13.855 -11.483 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.117 4.117 4 C -0.177 4.177 5 C 0.298 3.702 6 O -0.424 6.424 7 N -0.354 5.354 8 C 0.023 3.977 9 H 0.112 0.888 10 C -0.217 4.217 11 C 0.079 3.921 12 H 0.093 0.907 13 N -0.346 5.346 14 C -0.376 4.376 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.124 4.124 23 C -0.148 4.148 24 C -0.169 4.169 25 C -0.163 4.163 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.234 0.766 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.223 0.777 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.737 -13.242 -11.876 19.397 hybrid contribution 0.116 -0.050 1.294 1.300 sum -7.621 -13.292 -10.582 18.621 Atomic orbital electron populations 1.23883 0.96015 1.01867 1.01371 1.22992 0.96095 0.98405 0.99716 1.20499 0.97838 0.95304 0.98048 1.21625 0.99043 0.95800 1.01182 1.20670 0.79664 0.88792 0.81085 1.90690 1.65669 1.48404 1.37645 1.45647 1.40094 1.19544 1.30071 1.21707 0.92087 0.84529 0.99391 0.88773 1.24268 1.00608 0.99459 0.97381 1.21275 0.90291 0.92634 0.87867 0.90693 1.42391 1.46646 1.41430 1.04168 1.19238 1.18459 1.16273 0.83673 0.91245 1.24739 0.99043 0.98860 0.98027 1.69641 1.28478 1.25099 1.34696 0.86284 0.77377 0.77130 0.85468 1.21271 1.21701 1.21256 1.23585 0.91989 0.97686 0.99176 1.22447 0.94117 0.98778 0.99448 1.22741 0.95716 0.96330 1.02067 1.22631 0.96912 0.96007 1.00736 0.88502 0.88579 0.87366 0.90241 0.90710 0.88819 0.88874 0.76590 0.89675 0.92359 0.77697 0.93376 0.90819 0.90302 0.89188 0.92524 0.91783 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.47 14.32 29.02 0.42 -1.06 16 2 C -0.15 -1.21 9.52 -36.02 -0.34 -1.56 16 3 C -0.08 -0.75 4.95 -27.88 -0.14 -0.89 16 4 C -0.14 -1.23 5.68 -27.88 -0.16 -1.39 16 5 C 0.51 6.69 7.83 -10.98 -0.09 6.61 16 6 O -0.55 -9.34 15.58 5.55 0.09 -9.25 16 7 N -0.70 -8.95 5.05 -53.37 -0.27 -9.22 16 8 C 0.13 1.98 4.12 -67.48 -0.28 1.70 16 9 H 0.09 1.57 7.46 -51.93 -0.39 1.19 16 10 C -0.17 -3.11 7.69 -25.74 -0.20 -3.31 16 11 C 0.19 3.63 4.27 -67.48 -0.29 3.34 16 12 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 13 N -0.71 -16.94 5.33 -52.99 -0.28 -17.22 16 14 C -0.25 -6.59 9.97 -15.06 -0.15 -6.74 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 18 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.12 -1.92 0.92 -154.71 -0.14 -2.06 16 23 C -0.11 -1.76 7.47 -26.28 -0.20 -1.96 16 24 C -0.13 -2.01 8.08 -25.75 -0.21 -2.22 16 25 C -0.13 -1.75 7.49 -26.28 -0.20 -1.95 16 26 H 0.10 0.74 7.84 -52.49 -0.41 0.32 16 27 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 28 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 4.23 8.62 -40.82 -0.35 3.88 16 34 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.39 9.84 5.92 -40.82 -0.24 9.60 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.45 6.42 -51.93 -0.33 1.12 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -30.74 353.43 -8.67 -39.40 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.17 Total: 12.63 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.06 Total: -11.88 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.17 Total: -53.17 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.74 -8.67 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202590394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.104 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds