Wall clock time and date at job start Tue Mar 31 2020 00:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.52995 * 109.47164 * 124.99894 * 3 2 1 5 5 C 1.50707 * 109.47291 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99704 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99975 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99716 * 180.02562 * 7 5 4 9 9 H 1.09001 * 112.88745 * 336.34094 * 8 7 5 10 10 C 1.53952 * 113.66319 * 107.81053 * 8 7 5 11 11 C 1.53957 * 87.29467 * 89.73774 * 10 8 7 12 12 H 1.08996 * 113.65774 * 270.25711 * 11 10 8 13 13 N 1.46497 * 113.74591 * 139.21531 * 11 10 8 14 14 C 1.36938 * 120.00031 * 107.76955 * 13 11 10 15 15 H 1.08002 * 119.99622 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99967 * 179.97438 * 14 13 11 17 17 N 1.31614 * 120.00046 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99652 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47232 * 60.00540 * 18 16 14 20 20 H 1.48505 * 109.47109 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47413 * 300.00385 * 18 16 14 22 22 C 1.52909 * 113.66149 * 204.99910 * 8 7 5 23 23 C 1.52911 * 121.13956 * 144.70813 * 22 8 7 24 24 C 1.53948 * 86.78162 * 209.38038 * 23 22 8 25 25 C 1.52906 * 121.13740 * 36.14163 * 22 8 7 26 26 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 28 28 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 30 30 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 31 31 H 1.09000 * 109.47169 * 300.00250 * 4 3 2 32 32 H 1.09004 * 109.47281 * 60.00087 * 4 3 2 33 33 H 0.97000 * 120.00182 * 359.97438 * 7 5 4 34 34 H 1.08998 * 113.57684 * 204.33579 * 10 8 7 35 35 H 1.08992 * 113.57729 * 335.13160 * 10 8 7 36 36 H 0.96999 * 120.00085 * 287.77159 * 13 11 10 37 37 H 0.97003 * 119.99862 * 180.02562 * 17 16 14 38 38 H 1.08996 * 113.65799 * 323.85119 * 23 22 8 39 39 H 1.08998 * 113.66312 * 94.90856 * 23 22 8 40 40 H 1.09008 * 113.57852 * 270.13036 * 24 23 22 41 41 H 1.09004 * 113.65492 * 139.34894 * 24 23 22 42 42 H 1.09002 * 113.66577 * 265.09425 * 25 22 8 43 43 H 1.08997 * 113.66443 * 36.06010 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7881 2.6384 1.1820 6 8 3.5697 3.4648 0.3215 7 7 4.7051 2.8871 2.1379 8 6 5.4368 4.1562 2.1385 9 1 5.4770 4.6229 1.1543 10 6 5.0075 5.1164 3.2628 11 6 6.0849 4.4537 4.1406 12 1 5.7225 3.5931 4.7028 13 7 6.8353 5.4006 4.9691 14 6 6.6262 5.4421 6.3218 15 1 5.9083 4.7764 6.7778 16 6 7.3376 6.3389 7.1069 17 7 8.2127 7.1498 6.5512 18 14 7.0517 6.3959 8.9520 19 1 7.3693 5.0712 9.5433 20 1 7.9277 7.4313 9.5569 21 1 5.6306 6.7309 9.2227 22 6 6.7944 4.0816 2.8381 23 6 7.9906 4.8879 2.3312 24 6 8.8776 3.7645 2.8979 25 6 7.6653 2.8284 2.7425 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0045 28 1 1.8500 -0.9353 -0.0004 29 1 2.6212 1.4027 -0.9314 30 1 1.3585 2.1317 0.0896 31 1 2.4772 1.2355 2.1130 32 1 3.7399 0.5065 1.0921 33 1 4.8801 2.2260 2.8258 34 1 5.2093 6.1645 3.0418 35 1 3.9910 4.9460 3.6171 36 1 7.4803 5.9982 4.5595 37 1 8.7101 7.7762 7.0999 38 1 8.0324 4.9726 1.2453 39 1 8.1195 5.8446 2.8374 40 1 9.1748 3.9245 3.9344 41 1 9.7165 3.5023 2.2532 42 1 7.5344 2.1398 3.5773 43 1 7.6146 2.3334 1.7727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202590394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:10 Heat of formation + Delta-G solvation = 7.981488 kcal Electronic energy + Delta-G solvation = -21744.326924 eV Core-core repulsion = 18597.461870 eV Total energy + Delta-G solvation = -3146.865055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91074 -40.19220 -36.47239 -36.18162 -35.70682 -33.81016 -32.03013 -31.12010 -26.79728 -26.62677 -25.60049 -25.27090 -23.56423 -21.84850 -21.11032 -20.62021 -19.60834 -18.74710 -17.93608 -17.18015 -16.78758 -16.63994 -16.34366 -15.75000 -15.62692 -15.46247 -14.94284 -14.51680 -14.13637 -13.85600 -13.50190 -13.39384 -13.32003 -13.16440 -12.99711 -12.85680 -12.73775 -12.48373 -12.19281 -11.96495 -11.90906 -11.86393 -11.86229 -11.29959 -11.18907 -10.88085 -10.81538 -10.67061 -10.18501 -9.86975 -8.95238 -7.93018 -5.20604 1.42602 1.47857 1.50176 1.56067 1.69078 2.22789 2.57192 3.37906 3.50501 3.66232 3.76678 3.82979 3.94697 4.02643 4.02983 4.14159 4.23506 4.27626 4.40458 4.50152 4.60084 4.65720 4.72874 4.77200 4.87711 4.91280 4.97999 5.03664 5.09472 5.11570 5.13731 5.19629 5.25204 5.30347 5.50078 5.60313 5.64826 5.71359 5.79242 5.94718 6.28887 6.64715 7.33111 7.35901 8.13259 8.36325 9.30047 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.003722 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.099385 B = 7520.698455 C = 8269.716061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.079 4.079 4 C -0.126 4.126 5 C 0.509 3.491 6 O -0.591 6.591 7 N -0.695 5.695 8 C 0.148 3.852 9 H 0.084 0.916 10 C -0.175 4.175 11 C 0.180 3.820 12 H 0.083 0.917 13 N -0.720 5.720 14 C -0.243 4.243 15 H 0.077 0.923 16 C -0.074 4.074 17 N -0.969 5.969 18 Si 0.970 3.030 19 H -0.276 1.276 20 H -0.299 1.299 21 H -0.281 1.281 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.131 4.131 25 C -0.107 4.107 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.414 0.586 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.376 0.624 37 H 0.250 0.750 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 -16.866 -11.807 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.174 4.174 3 C -0.117 4.117 4 C -0.166 4.166 5 C 0.298 3.702 6 O -0.471 6.471 7 N -0.345 5.345 8 C 0.041 3.959 9 H 0.102 0.898 10 C -0.217 4.217 11 C 0.069 3.931 12 H 0.101 0.899 13 N -0.358 5.358 14 C -0.375 4.375 15 H 0.095 0.905 16 C -0.266 4.266 17 N -0.620 5.620 18 Si 0.799 3.201 19 H -0.202 1.202 20 H -0.225 1.225 21 H -0.207 1.207 22 C -0.116 4.116 23 C -0.152 4.152 24 C -0.168 4.168 25 C -0.144 4.144 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.142 0.858 33 H 0.251 0.749 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.210 0.790 37 H 0.059 0.941 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.543 -16.321 -12.202 22.097 hybrid contribution 0.283 0.890 1.319 1.617 sum -8.260 -15.431 -10.883 20.610 Atomic orbital electron populations 1.24041 0.96190 1.02373 1.00881 1.23011 0.96125 0.98159 1.00085 1.20451 0.97622 0.95709 0.97877 1.21653 0.99152 0.94030 1.01721 1.21438 0.79095 0.89678 0.79990 1.90682 1.66882 1.50173 1.39362 1.45553 1.39738 1.18662 1.30564 1.21335 0.91661 0.85131 0.97753 0.89782 1.24137 1.00072 0.98978 0.98486 1.21563 0.90871 0.92046 0.88573 0.89881 1.42551 1.47073 1.42417 1.03808 1.19659 1.17396 1.15299 0.85096 0.90491 1.25509 0.99635 0.99313 1.02148 1.69806 1.30041 1.26278 1.35841 0.85269 0.77076 0.77088 0.80664 1.20190 1.22544 1.20706 1.23344 0.92294 0.99174 0.96753 1.22507 0.94714 0.97519 1.00457 1.22653 0.97142 0.96546 1.00477 1.22595 0.94433 0.94944 1.02436 0.89182 0.87025 0.85405 0.91365 0.92723 0.86973 0.85754 0.74913 0.91784 0.92439 0.78981 0.94132 0.88656 0.93531 0.92504 0.90200 0.91006 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 14.32 67.79 0.97 -1.62 16 2 C -0.16 -2.05 9.52 25.65 0.24 -1.80 16 3 C -0.08 -1.36 4.95 29.85 0.15 -1.21 16 4 C -0.13 -1.87 5.68 29.85 0.17 -1.70 16 5 C 0.51 12.26 7.83 87.66 0.69 12.94 16 6 O -0.59 -19.75 15.58 -3.04 -0.05 -19.80 16 7 N -0.69 -15.93 5.05 -441.15 -2.23 -18.15 16 8 C 0.15 4.37 4.12 45.28 0.19 4.55 16 9 H 0.08 2.74 7.46 -2.39 -0.02 2.72 16 10 C -0.17 -6.23 7.69 31.23 0.24 -5.99 16 11 C 0.18 6.73 4.27 45.29 0.19 6.92 16 12 H 0.08 2.96 8.10 -2.39 -0.02 2.94 16 13 N -0.72 -35.16 5.33 -321.55 -1.71 -36.87 16 14 C -0.24 -13.13 9.97 84.03 0.84 -12.29 16 15 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 16 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 17 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 18 Si 0.97 45.62 29.55 68.60 2.03 47.64 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 C -0.11 -3.44 0.92 -52.31 -0.05 -3.49 16 23 C -0.11 -3.61 7.47 30.88 0.23 -3.38 16 24 C -0.13 -3.85 8.08 31.23 0.25 -3.60 16 25 C -0.11 -2.67 7.49 30.88 0.23 -2.43 16 26 H 0.09 1.27 7.84 -2.91 -0.02 1.25 16 27 H 0.11 1.10 8.06 -2.91 -0.02 1.08 16 28 H 0.13 1.19 8.06 -2.91 -0.02 1.17 16 29 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 30 H 0.05 1.14 7.75 -2.38 -0.02 1.12 16 31 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.41 7.30 8.62 -92.71 -0.80 6.50 16 34 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.38 19.91 5.92 -92.71 -0.55 19.36 16 37 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.05 1.78 6.42 -2.39 -0.02 1.77 16 40 H 0.06 2.06 8.14 -2.38 -0.02 2.05 16 41 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -68.27 353.43 2.78 -65.49 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -0.36 Total: 37.06 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 4.81 Total: -16.80 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -3.66 Total: -113.59 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.80 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.27 2.78 -65.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202590394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.469 kcal (2) G-P(sol) polarization free energy of solvation -68.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds