Wall clock time and date at job start Tue Mar 31 2020 00:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00038 * 2 1 4 4 C 1.53001 * 109.47500 * 124.99788 * 3 2 1 5 5 C 1.50694 * 109.47168 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00363 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99988 * 179.97438 * 5 4 3 8 8 C 1.46493 * 119.99864 * 179.72721 * 7 5 4 9 9 H 1.08997 * 112.88901 * 25.32932 * 8 7 5 10 10 C 1.53954 * 113.66138 * 253.98455 * 8 7 5 11 11 C 1.53947 * 87.29618 * 270.26450 * 10 8 7 12 12 H 1.09004 * 113.66121 * 89.73345 * 11 10 8 13 13 N 1.46495 * 113.66394 * 220.70263 * 11 10 8 14 14 C 1.36944 * 119.99854 * 255.49582 * 13 11 10 15 15 H 1.07999 * 119.99998 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00069 * 180.02562 * 14 13 11 17 17 N 1.31619 * 119.99757 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 119.99893 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47269 * 90.00476 * 18 16 14 20 20 H 1.48502 * 109.47247 * 210.00345 * 18 16 14 21 21 H 1.48501 * 109.47371 * 330.00385 * 18 16 14 22 22 C 1.52908 * 113.66238 * 156.67903 * 8 7 5 23 23 C 1.52913 * 121.14265 * 323.84612 * 22 8 7 24 24 C 1.53949 * 86.78370 * 209.37751 * 23 22 8 25 25 C 1.52911 * 121.14052 * 215.28602 * 22 8 7 26 26 H 1.07999 * 119.99557 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00168 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00168 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46737 * 4.99526 * 3 2 1 30 30 H 1.09002 * 109.46890 * 244.99637 * 3 2 1 31 31 H 1.08998 * 109.46837 * 60.00023 * 4 3 2 32 32 H 1.09002 * 109.46926 * 299.99827 * 4 3 2 33 33 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 34 34 H 1.09000 * 113.57790 * 24.86822 * 10 8 7 35 35 H 1.09000 * 113.58283 * 155.58352 * 10 8 7 36 36 H 0.97001 * 120.00277 * 75.49235 * 13 11 10 37 37 H 0.97005 * 120.00050 * 180.02562 * 17 16 14 38 38 H 1.08998 * 113.65788 * 323.85184 * 23 22 8 39 39 H 1.08997 * 113.65905 * 94.90246 * 23 22 8 40 40 H 1.08999 * 113.57982 * 270.12642 * 24 23 22 41 41 H 1.09001 * 113.57709 * 139.34173 * 24 23 22 42 42 H 1.08999 * 113.66089 * 265.10070 * 25 22 8 43 43 H 1.09005 * 113.66225 * 36.14634 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7880 2.6385 1.1819 6 8 3.5696 3.4649 0.3215 7 7 4.7043 2.8877 2.1385 8 6 5.4406 4.1542 2.1353 9 1 4.9000 4.9576 1.6349 10 6 6.9045 4.0167 1.6788 11 6 7.2651 3.7695 3.1549 12 1 7.2300 2.7190 3.4438 13 7 8.4991 4.4359 3.5782 14 6 9.6472 3.7085 3.7462 15 1 9.6427 2.6435 3.5671 16 6 10.8164 4.3398 4.1479 17 7 11.9198 3.6407 4.3089 18 14 10.8239 6.1818 4.4584 19 1 10.4870 6.4454 5.8805 20 1 12.1718 6.7287 4.1595 21 1 9.8189 6.8357 3.5823 22 6 5.9924 4.5467 3.5062 23 6 5.2112 4.2517 4.7872 24 6 5.8917 5.4961 5.3857 25 6 6.0548 6.0105 3.9440 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7399 0.5067 1.0921 32 1 2.4772 1.2357 2.1130 33 1 4.8793 2.2266 2.8264 34 1 7.0817 3.1542 1.0363 35 1 7.3236 4.9382 1.2747 36 1 8.5031 5.3924 3.7394 37 1 12.7368 4.0818 4.5899 38 1 4.1319 4.3547 4.6748 39 1 5.5010 3.3191 5.2713 40 1 6.8381 5.2796 5.8812 41 1 5.2251 6.1074 5.9940 42 1 7.0186 6.4830 3.7544 43 1 5.2126 6.6079 3.5946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202590395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:14 Heat of formation + Delta-G solvation = 30.855000 kcal Electronic energy + Delta-G solvation = -21813.138008 eV Core-core repulsion = 18667.264823 eV Total energy + Delta-G solvation = -3145.873185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74113 -39.13894 -35.67089 -35.07987 -34.15865 -32.37195 -30.97743 -30.16650 -25.66478 -25.37846 -24.25375 -24.07044 -21.80239 -20.77448 -20.02823 -20.00403 -18.43364 -17.32709 -16.94031 -16.14079 -15.75743 -15.28256 -15.04075 -14.82105 -14.53412 -14.03530 -13.60502 -13.25825 -12.90471 -12.61514 -12.54650 -12.43413 -12.16240 -12.05818 -11.93322 -11.56421 -11.28951 -11.26088 -11.01076 -10.98691 -10.73254 -10.31041 -10.14396 -9.90149 -9.84782 -9.72081 -9.55333 -9.48874 -8.91407 -8.74683 -7.30123 -5.82343 -3.17767 1.99551 2.67042 3.20524 3.33196 3.35784 3.41774 4.53752 4.54132 4.63494 4.69367 4.85352 4.88220 4.92138 5.05403 5.07424 5.08839 5.15178 5.34426 5.38501 5.48787 5.58028 5.63394 5.74105 5.79824 5.86712 5.89819 5.93867 5.96345 6.04745 6.14369 6.25940 6.29994 6.35875 6.43316 6.50479 6.57400 6.67730 6.76388 6.93770 7.59653 7.94142 8.28915 8.37572 9.15286 9.87805 10.07776 11.35907 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027814 B = 0.003725 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.445191 B = 7514.630323 C = 7969.266137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.512 3.488 6 O -0.546 6.546 7 N -0.705 5.705 8 C 0.131 3.869 9 H 0.095 0.905 10 C -0.174 4.174 11 C 0.198 3.802 12 H 0.083 0.917 13 N -0.734 5.734 14 C -0.247 4.247 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.880 3.120 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.135 4.135 25 C -0.113 4.113 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.401 0.599 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.364 0.636 37 H 0.260 0.740 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.627 -3.593 -2.918 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.117 4.117 4 C -0.177 4.177 5 C 0.299 3.701 6 O -0.423 6.423 7 N -0.355 5.355 8 C 0.025 3.975 9 H 0.113 0.887 10 C -0.216 4.216 11 C 0.087 3.913 12 H 0.101 0.899 13 N -0.374 5.374 14 C -0.377 4.377 15 H 0.108 0.892 16 C -0.189 4.189 17 N -0.579 5.579 18 Si 0.710 3.290 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.127 4.127 23 C -0.161 4.161 24 C -0.173 4.173 25 C -0.151 4.151 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.235 0.765 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.198 0.802 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.557 -3.175 -3.498 21.092 hybrid contribution 0.343 0.944 0.535 1.138 sum -20.214 -2.230 -2.963 20.551 Atomic orbital electron populations 1.23871 0.95999 1.01825 1.01546 1.23004 0.96091 0.98464 0.99550 1.20501 0.97788 0.95258 0.98154 1.21624 0.99081 0.95863 1.01088 1.20680 0.79467 0.88864 0.81098 1.90692 1.66195 1.48273 1.37175 1.45643 1.39938 1.19652 1.30237 1.21659 0.92554 0.86049 0.97218 0.88715 1.24227 0.94191 1.02304 1.00910 1.21321 0.83653 0.95183 0.91171 0.89918 1.42739 1.06459 1.06754 1.81460 1.19107 0.86172 0.93695 1.38725 0.89166 1.24670 0.95620 0.97234 1.01402 1.69697 1.00259 1.34728 1.53256 0.86620 0.76991 0.87129 0.78232 1.20942 1.21646 1.20279 1.23615 0.98594 0.97966 0.92510 1.22625 0.98478 0.98737 0.96282 1.22779 1.01277 0.97221 0.95986 1.22494 1.01901 0.94399 0.96286 0.88567 0.88569 0.87282 0.90796 0.90150 0.88671 0.88879 0.76474 0.91891 0.89737 0.80154 0.93000 0.90691 0.91358 0.89433 0.92116 0.91105 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.42 14.32 29.01 0.42 -1.00 16 2 C -0.15 -1.18 9.52 -36.03 -0.34 -1.52 16 3 C -0.08 -0.73 4.95 -27.88 -0.14 -0.87 16 4 C -0.14 -1.19 5.68 -27.89 -0.16 -1.35 16 5 C 0.51 6.45 7.83 -10.98 -0.09 6.37 16 6 O -0.55 -9.05 15.60 5.56 0.09 -8.96 16 7 N -0.71 -8.52 5.06 -53.37 -0.27 -8.79 16 8 C 0.13 1.90 4.09 -67.48 -0.28 1.62 16 9 H 0.09 1.49 7.50 -51.93 -0.39 1.10 16 10 C -0.17 -2.96 7.68 -25.74 -0.20 -3.16 16 11 C 0.20 3.59 4.28 -67.33 -0.29 3.30 16 12 H 0.08 1.49 8.12 -51.93 -0.42 1.07 16 13 N -0.73 -16.57 5.16 -52.84 -0.27 -16.84 16 14 C -0.25 -6.75 10.46 -15.06 -0.16 -6.91 16 15 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 16 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -28.83 13.97 55.49 0.78 -28.05 16 18 Si 0.88 21.72 27.73 -169.99 -4.71 17.01 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 22 C -0.12 -1.83 0.93 -154.55 -0.14 -1.98 16 23 C -0.12 -1.58 7.47 -26.28 -0.20 -1.78 16 24 C -0.14 -1.88 8.08 -25.75 -0.21 -2.08 16 25 C -0.11 -1.64 7.46 -26.29 -0.20 -1.84 16 26 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 27 H 0.10 0.68 7.84 -52.49 -0.41 0.27 16 28 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 30 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 4.00 8.59 -40.82 -0.35 3.65 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.36 8.15 3.74 -40.82 -0.15 8.00 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.16 6.43 -51.93 -0.33 0.82 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -31.94 350.34 -8.31 -40.24 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.12 Total: 11.22 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -2.07 Total: -11.11 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.23 Total: -53.69 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.94 -8.31 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202590395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.100 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds