Wall clock time and date at job start Tue Mar 31 2020 00:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00038 * 2 1 4 4 C 1.53001 * 109.47500 * 124.99788 * 3 2 1 5 5 C 1.50694 * 109.47168 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00363 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99988 * 179.97438 * 5 4 3 8 8 C 1.46493 * 119.99864 * 179.72721 * 7 5 4 9 9 H 1.08997 * 112.88901 * 25.32932 * 8 7 5 10 10 C 1.53954 * 113.66138 * 253.98455 * 8 7 5 11 11 C 1.53947 * 87.29618 * 270.26450 * 10 8 7 12 12 H 1.09004 * 113.66121 * 89.73345 * 11 10 8 13 13 N 1.46495 * 113.66394 * 220.70263 * 11 10 8 14 14 C 1.36944 * 119.99854 * 255.49582 * 13 11 10 15 15 H 1.07999 * 119.99998 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00069 * 180.02562 * 14 13 11 17 17 N 1.31619 * 119.99757 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 119.99893 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47269 * 90.00476 * 18 16 14 20 20 H 1.48502 * 109.47247 * 210.00345 * 18 16 14 21 21 H 1.48501 * 109.47371 * 330.00385 * 18 16 14 22 22 C 1.52908 * 113.66238 * 156.67903 * 8 7 5 23 23 C 1.52913 * 121.14265 * 323.84612 * 22 8 7 24 24 C 1.53949 * 86.78370 * 209.37751 * 23 22 8 25 25 C 1.52911 * 121.14052 * 215.28602 * 22 8 7 26 26 H 1.07999 * 119.99557 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00168 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00168 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46737 * 4.99526 * 3 2 1 30 30 H 1.09002 * 109.46890 * 244.99637 * 3 2 1 31 31 H 1.08998 * 109.46837 * 60.00023 * 4 3 2 32 32 H 1.09002 * 109.46926 * 299.99827 * 4 3 2 33 33 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 34 34 H 1.09000 * 113.57790 * 24.86822 * 10 8 7 35 35 H 1.09000 * 113.58283 * 155.58352 * 10 8 7 36 36 H 0.97001 * 120.00277 * 75.49235 * 13 11 10 37 37 H 0.97005 * 120.00050 * 180.02562 * 17 16 14 38 38 H 1.08998 * 113.65788 * 323.85184 * 23 22 8 39 39 H 1.08997 * 113.65905 * 94.90246 * 23 22 8 40 40 H 1.08999 * 113.57982 * 270.12642 * 24 23 22 41 41 H 1.09001 * 113.57709 * 139.34173 * 24 23 22 42 42 H 1.08999 * 113.66089 * 265.10070 * 25 22 8 43 43 H 1.09005 * 113.66225 * 36.14634 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7880 2.6385 1.1819 6 8 3.5696 3.4649 0.3215 7 7 4.7043 2.8877 2.1385 8 6 5.4406 4.1542 2.1353 9 1 4.9000 4.9576 1.6349 10 6 6.9045 4.0167 1.6788 11 6 7.2651 3.7695 3.1549 12 1 7.2300 2.7190 3.4438 13 7 8.4991 4.4359 3.5782 14 6 9.6472 3.7085 3.7462 15 1 9.6427 2.6435 3.5671 16 6 10.8164 4.3398 4.1479 17 7 11.9198 3.6407 4.3089 18 14 10.8239 6.1818 4.4584 19 1 10.4870 6.4454 5.8805 20 1 12.1718 6.7287 4.1595 21 1 9.8189 6.8357 3.5823 22 6 5.9924 4.5467 3.5062 23 6 5.2112 4.2517 4.7872 24 6 5.8917 5.4961 5.3857 25 6 6.0548 6.0105 3.9440 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7399 0.5067 1.0921 32 1 2.4772 1.2357 2.1130 33 1 4.8793 2.2266 2.8264 34 1 7.0817 3.1542 1.0363 35 1 7.3236 4.9382 1.2747 36 1 8.5031 5.3924 3.7394 37 1 12.7368 4.0818 4.5899 38 1 4.1319 4.3547 4.6748 39 1 5.5010 3.3191 5.2713 40 1 6.8381 5.2796 5.8812 41 1 5.2251 6.1074 5.9940 42 1 7.0186 6.4830 3.7544 43 1 5.2126 6.6079 3.5946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202590395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:13 Heat of formation + Delta-G solvation = 10.659682 kcal Electronic energy + Delta-G solvation = -21814.013743 eV Core-core repulsion = 18667.264823 eV Total energy + Delta-G solvation = -3146.748920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96661 -40.21991 -36.52078 -36.24491 -35.77856 -33.88915 -32.46718 -31.27628 -26.82338 -26.72752 -25.58238 -25.23288 -23.39192 -21.88719 -21.11804 -20.62359 -20.22440 -18.76262 -17.98623 -17.21995 -16.73756 -16.64266 -16.54730 -15.88925 -15.70360 -15.35686 -14.80509 -14.48855 -14.26911 -14.11948 -13.86755 -13.46028 -13.40549 -13.20131 -13.02690 -12.96414 -12.82144 -12.49421 -12.13475 -11.97658 -11.96595 -11.87674 -11.86672 -11.31972 -11.26409 -10.94887 -10.84397 -10.75178 -10.18411 -9.90455 -9.26376 -8.03419 -5.35386 1.35296 1.37584 1.42241 1.44577 1.67746 2.21382 2.46325 3.26419 3.42985 3.51750 3.71209 3.76687 3.86972 3.90753 4.00599 4.02643 4.18016 4.22834 4.39127 4.49849 4.55720 4.61281 4.68576 4.75142 4.84088 4.87915 4.96539 5.01370 5.05897 5.08917 5.11645 5.13712 5.22094 5.26633 5.50991 5.58949 5.65937 5.77915 5.79364 5.93815 6.22197 6.62584 7.07329 7.31320 7.84693 8.03356 9.18209 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027814 B = 0.003725 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.445191 B = 7514.630323 C = 7969.266137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C -0.078 4.078 4 C -0.127 4.127 5 C 0.510 3.490 6 O -0.589 6.589 7 N -0.697 5.697 8 C 0.149 3.851 9 H 0.089 0.911 10 C -0.175 4.175 11 C 0.183 3.817 12 H 0.081 0.919 13 N -0.737 5.737 14 C -0.228 4.228 15 H 0.060 0.940 16 C -0.062 4.062 17 N -0.983 5.983 18 Si 0.945 3.055 19 H -0.275 1.275 20 H -0.298 1.298 21 H -0.256 1.256 22 C -0.115 4.115 23 C -0.110 4.110 24 C -0.136 4.136 25 C -0.116 4.116 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.414 0.586 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.367 0.633 37 H 0.257 0.743 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.442 -3.402 -2.263 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.177 4.177 3 C -0.116 4.116 4 C -0.167 4.167 5 C 0.299 3.701 6 O -0.469 6.469 7 N -0.347 5.347 8 C 0.042 3.958 9 H 0.107 0.893 10 C -0.217 4.217 11 C 0.073 3.927 12 H 0.099 0.901 13 N -0.378 5.378 14 C -0.359 4.359 15 H 0.078 0.922 16 C -0.253 4.253 17 N -0.634 5.634 18 Si 0.773 3.227 19 H -0.201 1.201 20 H -0.225 1.225 21 H -0.181 1.181 22 C -0.117 4.117 23 C -0.147 4.147 24 C -0.173 4.173 25 C -0.154 4.154 26 H 0.129 0.871 27 H 0.112 0.888 28 H 0.141 0.859 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.251 0.749 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.442 -3.005 -2.840 23.804 hybrid contribution 1.151 0.795 0.257 1.423 sum -22.291 -2.209 -2.583 22.549 Atomic orbital electron populations 1.24038 0.96008 1.02476 1.00588 1.22997 0.96233 0.98095 1.00360 1.20443 0.97617 0.95827 0.97692 1.21654 0.99104 0.93910 1.02007 1.21396 0.79031 0.89640 0.80035 1.90680 1.67485 1.49969 1.38780 1.45580 1.39426 1.19090 1.30637 1.21341 0.90947 0.87031 0.96493 0.89322 1.24135 0.96485 1.01407 0.99710 1.21603 0.83439 0.95550 0.92075 0.90065 1.42721 1.06568 1.06758 1.81793 1.19093 0.87724 0.92742 1.36327 0.92173 1.25424 0.95340 1.02003 1.02540 1.69870 1.01022 1.36747 1.55728 0.85557 0.76906 0.81531 0.78719 1.20069 1.22474 1.18092 1.23389 0.96414 0.98201 0.93726 1.22620 0.99471 0.98490 0.94109 1.22741 1.00759 0.98125 0.95698 1.22599 1.01785 0.94083 0.96931 0.87113 0.88810 0.85876 0.92122 0.91866 0.86602 0.86323 0.74946 0.92619 0.90972 0.79861 0.93419 0.88198 0.91023 0.91969 0.89687 0.93153 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.16 -2.10 9.52 25.65 0.24 -1.85 16 3 C -0.08 -1.33 4.95 29.85 0.15 -1.18 16 4 C -0.13 -1.87 5.68 29.85 0.17 -1.70 16 5 C 0.51 11.90 7.83 87.65 0.69 12.59 16 6 O -0.59 -19.05 15.60 -3.04 -0.05 -19.09 16 7 N -0.70 -15.27 5.06 -441.16 -2.23 -17.51 16 8 C 0.15 4.06 4.09 45.28 0.19 4.25 16 9 H 0.09 2.63 7.50 -2.39 -0.02 2.62 16 10 C -0.18 -5.90 7.68 31.23 0.24 -5.66 16 11 C 0.18 6.49 4.28 45.38 0.19 6.69 16 12 H 0.08 2.90 8.12 -2.38 -0.02 2.88 16 13 N -0.74 -33.18 5.16 -321.09 -1.66 -34.84 16 14 C -0.23 -12.68 10.46 84.03 0.88 -11.80 16 15 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 16 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 17 N -0.98 -62.64 13.97 21.65 0.30 -62.34 16 18 Si 0.95 45.30 27.73 68.60 1.90 47.20 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 21 H -0.26 -11.23 6.52 99.48 0.65 -10.58 16 22 C -0.12 -3.15 0.93 -52.21 -0.05 -3.20 16 23 C -0.11 -2.43 7.47 30.89 0.23 -2.20 16 24 C -0.14 -3.38 8.08 31.23 0.25 -3.13 16 25 C -0.12 -3.09 7.46 30.88 0.23 -2.86 16 26 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 27 H 0.09 1.18 7.84 -2.91 -0.02 1.16 16 28 H 0.12 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.06 1.18 7.75 -2.39 -0.02 1.16 16 30 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 31 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.41 7.06 8.59 -92.71 -0.80 6.26 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.37 16.11 3.74 -92.71 -0.35 15.77 16 37 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 1.56 6.43 -2.39 -0.02 1.54 16 43 H 0.10 2.27 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -71.05 350.34 2.91 -68.15 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.21 Total: 33.07 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 4.85 Total: -14.64 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -3.59 Total: -114.69 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Total: -71.05 2.91 -68.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202590395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.807 kcal (2) G-P(sol) polarization free energy of solvation -71.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds