Wall clock time and date at job start Tue Mar 31 2020 00:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32993 * 120.00156 * 2 1 4 4 C 1.50698 * 119.99825 * 0.02562 * 3 2 1 5 5 C 1.47096 * 119.99944 * 180.02562 * 3 2 1 6 6 O 1.21617 * 120.00133 * 359.97438 * 5 3 2 7 7 N 1.34779 * 120.00178 * 179.97438 * 5 3 2 8 8 C 1.46496 * 120.00107 * 179.97438 * 7 5 3 9 9 H 1.09000 * 112.88852 * 23.65901 * 8 7 5 10 10 C 1.53950 * 113.66637 * 252.18817 * 8 7 5 11 11 C 1.53948 * 87.29529 * 220.79942 * 10 8 7 12 12 H 1.09000 * 113.66626 * 139.20572 * 11 10 8 13 13 N 1.46499 * 113.74253 * 270.24441 * 11 10 8 14 14 C 1.36935 * 120.00125 * 252.22726 * 13 11 10 15 15 H 1.07993 * 120.00487 * 0.02562 * 14 13 11 16 16 C 1.38819 * 119.99990 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00171 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99952 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47208 * 89.99668 * 18 16 14 20 20 H 1.48495 * 109.46982 * 210.00038 * 18 16 14 21 21 H 1.48501 * 109.47071 * 329.99711 * 18 16 14 22 22 C 1.52908 * 86.78684 * 24.73071 * 11 10 8 23 23 C 1.52908 * 121.13607 * 100.82013 * 22 11 10 24 24 C 1.53949 * 86.78116 * 100.81966 * 23 22 11 25 25 C 1.52906 * 121.13930 * 209.38373 * 22 11 10 26 26 H 1.09001 * 109.46953 * 299.99735 * 1 2 3 27 27 H 1.09000 * 109.47318 * 59.99333 * 1 2 3 28 28 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99515 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46940 * 90.00187 * 4 3 2 31 31 H 1.09004 * 109.47126 * 210.00051 * 4 3 2 32 32 H 1.08998 * 109.47369 * 329.99814 * 4 3 2 33 33 H 0.96999 * 119.99538 * 0.02562 * 7 5 3 34 34 H 1.09003 * 113.57360 * 335.39785 * 10 8 7 35 35 H 1.08989 * 113.57949 * 106.18986 * 10 8 7 36 36 H 0.97002 * 120.00049 * 72.23743 * 13 11 10 37 37 H 0.96998 * 120.00016 * 179.97438 * 17 16 14 38 38 H 1.08996 * 113.66430 * 215.29829 * 23 22 11 39 39 H 1.09008 * 113.66379 * 346.35089 * 23 22 11 40 40 H 1.08999 * 113.58104 * 270.12742 * 24 23 22 41 41 H 1.09002 * 113.57644 * 139.33578 * 24 23 22 42 42 H 1.08998 * 113.65914 * 13.65191 * 25 22 11 43 43 H 1.08990 * 113.66335 * 144.70874 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4186 2.4568 0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2511 0.0984 -0.0006 7 7 4.3170 2.3189 -0.0011 8 6 5.7820 2.3188 -0.0011 9 1 6.2058 1.3988 -0.4036 10 6 6.3999 2.7507 1.3412 11 6 7.4370 3.5436 0.5252 12 1 7.6692 4.5221 0.9457 13 7 8.6344 2.7716 0.1839 14 6 9.8229 3.0391 0.8092 15 1 9.8776 3.8189 1.5542 16 6 10.9575 2.3078 0.4853 17 7 12.0998 2.5646 1.0867 18 14 10.8632 0.9594 -0.8040 19 1 11.1537 1.5331 -2.1425 20 1 11.8602 -0.0956 -0.4906 21 1 9.5008 0.3687 -0.8037 22 6 6.3957 3.5879 -0.5936 23 6 5.5481 4.8373 -0.8359 24 6 6.5095 5.1590 -1.9944 25 6 6.8155 3.6517 -2.0625 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.0470 -0.9353 -0.0004 30 1 1.2373 2.7712 1.0284 31 1 2.0075 3.2166 -0.5133 32 1 0.4660 2.3266 -0.5129 33 1 3.8320 3.1589 -0.0007 34 1 5.7430 3.3806 1.9409 35 1 6.8300 1.9256 1.9087 36 1 8.5853 2.0709 -0.4852 37 1 12.8925 2.0534 0.8606 38 1 4.5304 4.6195 -1.1595 39 1 5.5894 5.5589 -0.0200 40 1 7.3651 5.7646 -1.6957 41 1 6.0084 5.5427 -2.8831 42 1 7.8693 3.4263 -2.2264 43 1 6.1540 3.1008 -2.7309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202727145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:20 Heat of formation + Delta-G solvation = 30.097036 kcal Electronic energy + Delta-G solvation = -22190.141499 eV Core-core repulsion = 19044.235446 eV Total energy + Delta-G solvation = -3145.906053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.72933 -39.17416 -35.69239 -35.14410 -34.19431 -32.40011 -30.40548 -29.34297 -26.45081 -25.65150 -24.72946 -24.24321 -22.63557 -21.18372 -20.40471 -18.88020 -18.12293 -17.27209 -16.90253 -16.19299 -15.29634 -15.11280 -14.93109 -14.72598 -14.06646 -13.83456 -13.65054 -13.03643 -12.92029 -12.76861 -12.64005 -12.56918 -12.35851 -12.26207 -12.06740 -11.94465 -11.49894 -11.48477 -11.00343 -10.90628 -10.83505 -10.24906 -10.12244 -9.90473 -9.77003 -9.61521 -9.50408 -9.24995 -8.89810 -8.64041 -7.30597 -5.79511 -3.15847 1.26900 3.30075 3.33745 3.38669 3.43955 3.46852 4.57021 4.59063 4.61320 4.69025 4.75706 4.88829 4.92620 4.99135 5.06700 5.18871 5.21003 5.35011 5.37733 5.41785 5.56056 5.56324 5.61595 5.67845 5.78693 5.83599 5.86904 5.93822 6.04751 6.14507 6.22913 6.28316 6.35817 6.42162 6.56858 6.61385 6.65777 6.75396 6.96388 7.67050 7.97212 8.35571 8.39963 9.17326 9.89802 10.08633 11.38346 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021351 B = 0.004624 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.094819 B = 6053.951599 C = 6715.048647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 C -0.189 4.189 4 C -0.117 4.117 5 C 0.548 3.452 6 O -0.545 6.545 7 N -0.710 5.710 8 C 0.135 3.865 9 H 0.110 0.890 10 C -0.180 4.180 11 C 0.203 3.797 12 H 0.077 0.923 13 N -0.725 5.725 14 C -0.247 4.247 15 H 0.093 0.907 16 C 0.009 3.991 17 N -0.931 5.931 18 Si 0.878 3.122 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.275 1.275 22 C -0.127 4.127 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.129 4.129 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.397 0.603 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.364 0.636 37 H 0.260 0.740 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.137 2.648 -4.425 24.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.174 4.174 5 C 0.336 3.664 6 O -0.424 6.424 7 N -0.360 5.360 8 C 0.031 3.969 9 H 0.128 0.872 10 C -0.222 4.222 11 C 0.090 3.910 12 H 0.095 0.905 13 N -0.364 5.364 14 C -0.377 4.377 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.578 5.578 18 Si 0.708 3.292 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.201 1.201 22 C -0.130 4.130 23 C -0.152 4.152 24 C -0.170 4.170 25 C -0.166 4.166 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.197 0.803 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.436 1.998 -4.282 23.908 hybrid contribution -0.170 -0.732 -0.867 1.147 sum -23.607 1.265 -5.149 24.195 Atomic orbital electron populations 1.20976 0.92241 1.02947 1.02436 1.23558 0.96123 0.98078 0.92278 1.21499 0.93034 0.96681 1.08031 1.20822 0.99985 0.94124 1.02483 1.18438 0.87588 0.84095 0.76314 1.90797 1.70068 1.31315 1.50247 1.45986 1.07657 1.08076 1.74302 1.22426 0.77641 0.98781 0.98046 0.87173 1.24253 0.99621 1.01768 0.96565 1.20573 0.84714 0.94818 0.90872 0.90460 1.42459 1.05712 1.40633 1.47613 1.19074 0.84667 1.16391 1.17549 0.88956 1.24643 0.95430 0.99213 0.99386 1.69691 0.99741 1.43332 1.45023 0.86636 0.77377 0.82810 0.82348 1.20919 1.21569 1.20090 1.23647 0.98532 0.94406 0.96411 1.22515 0.97309 0.96389 0.98978 1.22739 0.99458 0.96987 0.97780 1.22657 1.02294 0.96177 0.95514 0.90841 0.90782 0.91491 0.85641 0.90905 0.91839 0.90991 0.76728 0.90803 0.90758 0.80282 0.92958 0.90706 0.91114 0.89755 0.92120 0.90419 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 8.91 36.01 0.32 -0.51 16 2 C -0.08 -0.81 9.84 -36.12 -0.36 -1.16 16 3 C -0.19 -2.07 6.00 -102.85 -0.62 -2.69 16 4 C -0.12 -0.86 9.14 36.00 0.33 -0.53 16 5 C 0.55 8.20 7.75 -12.67 -0.10 8.10 16 6 O -0.55 -10.60 15.82 5.26 0.08 -10.52 16 7 N -0.71 -9.54 5.19 -54.55 -0.28 -9.82 16 8 C 0.14 2.21 4.04 -67.48 -0.27 1.94 16 9 H 0.11 2.16 7.46 -51.93 -0.39 1.78 16 10 C -0.18 -3.12 7.69 -25.75 -0.20 -3.32 16 11 C 0.20 3.82 4.36 -67.48 -0.29 3.53 16 12 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 13 N -0.72 -16.99 4.66 -52.99 -0.25 -17.23 16 14 C -0.25 -6.90 10.45 -15.06 -0.16 -7.05 16 15 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 16 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 17 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 18 Si 0.88 22.42 27.74 -169.99 -4.71 17.70 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.27 -6.79 6.52 56.52 0.37 -6.42 16 22 C -0.13 -1.94 0.92 -154.71 -0.14 -2.08 16 23 C -0.11 -1.34 7.15 -26.28 -0.19 -1.53 16 24 C -0.13 -1.69 8.08 -25.75 -0.21 -1.89 16 25 C -0.13 -1.95 7.62 -26.28 -0.20 -2.15 16 26 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 27 H 0.07 0.40 7.40 -51.93 -0.38 0.02 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.13 1.45 7.49 -52.49 -0.39 1.06 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.42 6.70 -51.93 -0.35 0.07 16 32 H 0.07 0.41 6.49 -51.93 -0.34 0.08 16 33 H 0.40 4.15 5.14 -40.82 -0.21 3.94 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.48 8.14 -51.94 -0.42 1.05 16 36 H 0.36 8.60 5.47 -40.82 -0.22 8.38 16 37 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 38 H 0.07 0.73 7.03 -51.93 -0.36 0.37 16 39 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -33.10 344.01 -8.24 -41.33 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.86 Total: 10.91 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.18 Total: -9.15 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.24 Total: -55.46 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.10 -8.24 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202727145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.431 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds