Wall clock time and date at job start Tue Mar 31 2020 00:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32993 * 120.00156 * 2 1 4 4 C 1.50698 * 119.99825 * 0.02562 * 3 2 1 5 5 C 1.47096 * 119.99944 * 180.02562 * 3 2 1 6 6 O 1.21617 * 120.00133 * 359.97438 * 5 3 2 7 7 N 1.34779 * 120.00178 * 179.97438 * 5 3 2 8 8 C 1.46496 * 120.00107 * 179.97438 * 7 5 3 9 9 H 1.09000 * 112.88852 * 23.65901 * 8 7 5 10 10 C 1.53950 * 113.66637 * 252.18817 * 8 7 5 11 11 C 1.53948 * 87.29529 * 220.79942 * 10 8 7 12 12 H 1.09000 * 113.66626 * 139.20572 * 11 10 8 13 13 N 1.46499 * 113.74253 * 270.24441 * 11 10 8 14 14 C 1.36935 * 120.00125 * 252.22726 * 13 11 10 15 15 H 1.07993 * 120.00487 * 0.02562 * 14 13 11 16 16 C 1.38819 * 119.99990 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00171 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99952 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47208 * 89.99668 * 18 16 14 20 20 H 1.48495 * 109.46982 * 210.00038 * 18 16 14 21 21 H 1.48501 * 109.47071 * 329.99711 * 18 16 14 22 22 C 1.52908 * 86.78684 * 24.73071 * 11 10 8 23 23 C 1.52908 * 121.13607 * 100.82013 * 22 11 10 24 24 C 1.53949 * 86.78116 * 100.81966 * 23 22 11 25 25 C 1.52906 * 121.13930 * 209.38373 * 22 11 10 26 26 H 1.09001 * 109.46953 * 299.99735 * 1 2 3 27 27 H 1.09000 * 109.47318 * 59.99333 * 1 2 3 28 28 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99515 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46940 * 90.00187 * 4 3 2 31 31 H 1.09004 * 109.47126 * 210.00051 * 4 3 2 32 32 H 1.08998 * 109.47369 * 329.99814 * 4 3 2 33 33 H 0.96999 * 119.99538 * 0.02562 * 7 5 3 34 34 H 1.09003 * 113.57360 * 335.39785 * 10 8 7 35 35 H 1.08989 * 113.57949 * 106.18986 * 10 8 7 36 36 H 0.97002 * 120.00049 * 72.23743 * 13 11 10 37 37 H 0.96998 * 120.00016 * 179.97438 * 17 16 14 38 38 H 1.08996 * 113.66430 * 215.29829 * 23 22 11 39 39 H 1.09008 * 113.66379 * 346.35089 * 23 22 11 40 40 H 1.08999 * 113.58104 * 270.12742 * 24 23 22 41 41 H 1.09002 * 113.57644 * 139.33578 * 24 23 22 42 42 H 1.08998 * 113.65914 * 13.65191 * 25 22 11 43 43 H 1.08990 * 113.66335 * 144.70874 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4186 2.4568 0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2511 0.0984 -0.0006 7 7 4.3170 2.3189 -0.0011 8 6 5.7820 2.3188 -0.0011 9 1 6.2058 1.3988 -0.4036 10 6 6.3999 2.7507 1.3412 11 6 7.4370 3.5436 0.5252 12 1 7.6692 4.5221 0.9457 13 7 8.6344 2.7716 0.1839 14 6 9.8229 3.0391 0.8092 15 1 9.8776 3.8189 1.5542 16 6 10.9575 2.3078 0.4853 17 7 12.0998 2.5646 1.0867 18 14 10.8632 0.9594 -0.8040 19 1 11.1537 1.5331 -2.1425 20 1 11.8602 -0.0956 -0.4906 21 1 9.5008 0.3687 -0.8037 22 6 6.3957 3.5879 -0.5936 23 6 5.5481 4.8373 -0.8359 24 6 6.5095 5.1590 -1.9944 25 6 6.8155 3.6517 -2.0625 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.0470 -0.9353 -0.0004 30 1 1.2373 2.7712 1.0284 31 1 2.0075 3.2166 -0.5133 32 1 0.4660 2.3266 -0.5129 33 1 3.8320 3.1589 -0.0007 34 1 5.7430 3.3806 1.9409 35 1 6.8300 1.9256 1.9087 36 1 8.5853 2.0709 -0.4852 37 1 12.8925 2.0534 0.8606 38 1 4.5304 4.6195 -1.1595 39 1 5.5894 5.5589 -0.0200 40 1 7.3651 5.7646 -1.6957 41 1 6.0084 5.5427 -2.8831 42 1 7.8693 3.4263 -2.2264 43 1 6.1540 3.1008 -2.7309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202727145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:20 Heat of formation + Delta-G solvation = 8.052305 kcal Electronic energy + Delta-G solvation = -22191.097430 eV Core-core repulsion = 19044.235446 eV Total energy + Delta-G solvation = -3146.861984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.01465 -40.34791 -36.65988 -36.43634 -35.73938 -34.12176 -32.24880 -30.07814 -27.19439 -26.78609 -26.28736 -25.53908 -24.27546 -22.41199 -21.71348 -20.18730 -19.77433 -18.52131 -18.00276 -17.49949 -16.64128 -16.48045 -16.29595 -15.99594 -15.59531 -14.78633 -14.71554 -14.52238 -14.29291 -13.97114 -13.77282 -13.68325 -13.35892 -13.32744 -13.16718 -12.94617 -12.81575 -12.73789 -12.53995 -12.32612 -12.16365 -11.97137 -11.88706 -11.38423 -11.29825 -10.99339 -10.87579 -10.76936 -10.10123 -9.79744 -9.34333 -8.07541 -5.40022 0.39088 1.31790 1.34086 1.40058 2.21267 2.25657 2.41854 3.22227 3.23764 3.44502 3.69876 3.77763 3.89139 3.93551 4.01428 4.03953 4.10748 4.30100 4.47167 4.50513 4.59849 4.73296 4.76367 4.79024 4.82560 4.89312 4.93324 5.00216 5.05207 5.08459 5.12921 5.17447 5.18557 5.24278 5.39983 5.49890 5.57113 5.63403 5.69892 5.75590 6.18236 6.60317 7.02019 7.25714 7.79002 7.96238 9.13790 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021351 B = 0.004624 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.094819 B = 6053.951599 C = 6715.048647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.113 4.113 5 C 0.538 3.462 6 O -0.603 6.603 7 N -0.692 5.692 8 C 0.142 3.858 9 H 0.072 0.928 10 C -0.172 4.172 11 C 0.182 3.818 12 H 0.076 0.924 13 N -0.731 5.731 14 C -0.227 4.227 15 H 0.066 0.934 16 C -0.055 4.055 17 N -0.979 5.979 18 Si 0.942 3.058 19 H -0.273 1.273 20 H -0.294 1.294 21 H -0.268 1.268 22 C -0.116 4.116 23 C -0.096 4.096 24 C -0.126 4.126 25 C -0.138 4.138 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.416 0.584 34 H 0.105 0.895 35 H 0.040 0.960 36 H 0.362 0.638 37 H 0.258 0.742 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.322 4.068 -5.670 29.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.096 4.096 3 C -0.205 4.205 4 C -0.169 4.169 5 C 0.329 3.671 6 O -0.486 6.486 7 N -0.344 5.344 8 C 0.036 3.964 9 H 0.090 0.910 10 C -0.213 4.213 11 C 0.072 3.928 12 H 0.094 0.906 13 N -0.371 5.371 14 C -0.358 4.358 15 H 0.084 0.916 16 C -0.247 4.247 17 N -0.629 5.629 18 Si 0.770 3.230 19 H -0.199 1.199 20 H -0.220 1.220 21 H -0.193 1.193 22 C -0.118 4.118 23 C -0.133 4.133 24 C -0.163 4.163 25 C -0.176 4.176 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.255 0.745 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.195 0.805 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -27.709 3.477 -5.536 28.470 hybrid contribution 1.072 -1.178 -0.413 1.645 sum -26.637 2.299 -5.948 27.390 Atomic orbital electron populations 1.21033 0.88991 1.04059 1.03917 1.23795 0.98365 0.96839 0.90648 1.21547 0.90458 0.98998 1.09521 1.20890 1.00460 0.91863 1.03714 1.19236 0.89490 0.83381 0.75022 1.90772 1.71579 1.33310 1.52907 1.45748 1.06235 1.08817 1.73561 1.21999 0.79459 0.97801 0.97140 0.91009 1.24159 0.99480 1.00755 0.96953 1.20845 0.84167 0.94239 0.93548 0.90605 1.42439 1.05918 1.41376 1.47407 1.19074 0.86224 1.14533 1.16003 0.91584 1.25334 0.95265 1.02050 1.02065 1.69843 1.00542 1.45149 1.47359 0.85607 0.77346 0.79905 0.80135 1.19878 1.22013 1.19312 1.23469 0.97425 0.95603 0.95347 1.22574 0.98011 0.93851 0.98892 1.22697 0.99490 0.94689 0.99409 1.22747 1.00734 0.98687 0.95434 0.89218 0.88925 0.90792 0.88346 0.89711 0.90881 0.88864 0.74466 0.87678 0.94128 0.80450 0.93256 0.87435 0.89525 0.91103 0.89387 0.93515 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.91 71.24 0.63 -0.52 16 2 C -0.08 -1.41 9.84 24.52 0.24 -1.17 16 3 C -0.20 -3.97 6.00 -18.71 -0.11 -4.08 16 4 C -0.11 -1.14 9.14 71.24 0.65 -0.48 16 5 C 0.54 15.68 7.75 86.57 0.67 16.35 16 6 O -0.60 -24.18 15.82 -4.08 -0.06 -24.24 16 7 N -0.69 -17.19 5.19 -444.75 -2.31 -19.50 16 8 C 0.14 4.55 4.04 45.28 0.18 4.74 16 9 H 0.07 2.92 7.46 -2.39 -0.02 2.90 16 10 C -0.17 -5.92 7.69 31.23 0.24 -5.68 16 11 C 0.18 6.87 4.36 45.28 0.20 7.07 16 12 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 13 N -0.73 -35.16 4.66 -321.57 -1.50 -36.66 16 14 C -0.23 -13.14 10.45 84.04 0.88 -12.26 16 15 H 0.07 4.10 8.06 -2.91 -0.02 4.07 16 16 C -0.06 -3.33 5.50 84.86 0.47 -2.87 16 17 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 18 Si 0.94 47.88 27.74 68.60 1.90 49.79 16 19 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 21 H -0.27 -13.08 6.52 99.48 0.65 -12.44 16 22 C -0.12 -3.34 0.92 -52.31 -0.05 -3.39 16 23 C -0.10 -1.84 7.15 30.88 0.22 -1.62 16 24 C -0.13 -2.79 8.08 31.23 0.25 -2.54 16 25 C -0.14 -3.97 7.62 30.88 0.24 -3.74 16 26 H 0.09 0.61 8.10 -2.39 -0.02 0.59 16 27 H 0.09 0.58 7.40 -2.39 -0.02 0.57 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 2.33 7.49 -2.91 -0.02 2.30 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.59 6.70 -2.38 -0.02 0.58 16 32 H 0.09 0.57 6.49 -2.39 -0.02 0.56 16 33 H 0.42 7.01 5.14 -92.71 -0.48 6.53 16 34 H 0.10 2.93 8.14 -2.39 -0.02 2.92 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.36 17.54 5.47 -92.71 -0.51 17.03 16 37 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 38 H 0.11 1.45 7.03 -2.39 -0.02 1.43 16 39 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.63 7.58 -2.39 -0.02 1.61 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -77.41 344.01 3.01 -74.40 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -0.03 Total: 29.67 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 4.71 Total: -10.17 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -3.51 Total: -119.44 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.06 Total: -24.24 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.90 Total: 49.79 kcal Total: -77.41 3.01 -74.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202727145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.451 kcal (2) G-P(sol) polarization free energy of solvation -77.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds