Wall clock time and date at job start Tue Mar 31 2020 00:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32996 * 119.99633 * 2 1 4 4 C 1.50697 * 119.99633 * 179.97438 * 3 2 1 5 5 C 1.47098 * 119.99996 * 359.97438 * 3 2 1 6 6 O 1.21614 * 120.00279 * 0.02562 * 5 3 2 7 7 N 1.34777 * 119.99939 * 180.02562 * 5 3 2 8 8 C 1.46500 * 120.00024 * 180.02562 * 7 5 3 9 9 H 1.08994 * 112.95022 * 23.58942 * 8 7 5 10 10 C 1.53949 * 113.65758 * 252.18376 * 8 7 5 11 11 C 1.53954 * 87.29765 * 270.25786 * 10 8 7 12 12 H 1.09008 * 113.65560 * 89.74254 * 11 10 8 13 13 N 1.46501 * 113.74724 * 220.78064 * 11 10 8 14 14 C 1.36932 * 119.99879 * 252.22776 * 13 11 10 15 15 H 1.07995 * 120.00586 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99690 * 180.02562 * 14 13 11 17 17 N 1.31627 * 120.00194 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00147 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47123 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46979 * 119.99743 * 18 16 14 21 21 H 1.48495 * 109.47109 * 239.99887 * 18 16 14 22 22 C 1.52905 * 86.78040 * 335.26948 * 11 10 8 23 23 C 1.52917 * 121.13340 * 150.61456 * 22 11 10 24 24 C 1.53957 * 86.77928 * 150.61497 * 23 22 11 25 25 C 1.52909 * 121.13655 * 259.17353 * 22 11 10 26 26 H 1.09001 * 109.47230 * 60.00580 * 1 2 3 27 27 H 1.09002 * 109.47296 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47664 * 300.00043 * 1 2 3 29 29 H 1.08000 * 120.00155 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47130 * 269.99354 * 4 3 2 31 31 H 1.08997 * 109.47562 * 29.99592 * 4 3 2 32 32 H 1.09001 * 109.47027 * 150.00287 * 4 3 2 33 33 H 0.97006 * 120.00060 * 0.02562 * 7 5 3 34 34 H 1.09009 * 113.57633 * 155.65733 * 10 8 7 35 35 H 1.08998 * 113.58530 * 24.86787 * 10 8 7 36 36 H 0.97004 * 119.99468 * 72.23753 * 13 11 10 37 37 H 0.96999 * 120.00058 * 179.97438 * 17 16 14 38 38 H 1.08997 * 113.66031 * 265.08631 * 23 22 11 39 39 H 1.09002 * 113.66187 * 36.15037 * 23 22 11 40 40 H 1.09001 * 113.57949 * 89.86751 * 24 23 22 41 41 H 1.08996 * 113.58143 * 220.66411 * 24 23 22 42 42 H 1.09001 * 113.66026 * 323.85782 * 25 22 11 43 43 H 1.08998 * 113.65932 * 94.90900 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1518 0.0006 5 6 1.4363 2.4257 -0.0006 6 8 0.2202 2.4257 -0.0006 7 7 2.1101 3.5929 -0.0011 8 6 1.3776 4.8616 -0.0011 9 1 0.3687 4.7698 0.4010 10 6 1.4418 5.6120 -1.3438 11 6 2.7107 6.3038 -0.8132 12 1 3.6305 5.7651 -1.0415 13 7 2.7880 7.7288 -1.1442 14 6 3.6804 8.1655 -2.0865 15 1 4.3270 7.4594 -2.5861 16 6 3.7539 9.5158 -2.3996 17 7 2.9655 10.3765 -1.7911 18 14 4.9708 10.1115 -3.6856 19 1 5.7338 8.9544 -4.2186 20 1 4.2358 10.7721 -4.7941 21 1 5.9097 11.0815 -3.0669 22 6 2.1701 6.0280 0.5902 23 6 3.1147 5.8220 1.7750 24 6 1.9941 6.4013 2.6575 25 6 1.4776 7.1244 1.4004 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.0470 -0.9353 0.0004 30 1 4.0418 1.1522 1.0284 31 1 4.0425 0.2617 -0.5128 32 1 4.0424 2.0417 -0.5133 33 1 3.0802 3.5930 -0.0015 34 1 0.6068 6.2947 -1.5021 35 1 1.6249 4.9613 -2.1988 36 1 2.2070 8.3630 -0.6956 37 1 3.0172 11.3201 -2.0097 38 1 3.3365 4.7748 1.9807 39 1 4.0077 6.4460 1.7362 40 1 1.3065 5.6471 3.0401 41 1 2.3549 7.0777 3.4323 42 1 1.9105 8.1143 1.2562 43 1 0.3917 7.1176 1.3068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202727146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:23 Heat of formation + Delta-G solvation = 29.467082 kcal Electronic energy + Delta-G solvation = -22245.447713 eV Core-core repulsion = 19099.514343 eV Total energy + Delta-G solvation = -3145.933369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.67955 -39.20473 -35.25993 -34.87114 -34.12857 -32.38173 -30.27154 -29.45585 -25.50843 -25.25966 -24.67709 -24.06438 -22.99664 -21.56575 -20.29784 -19.31827 -17.70976 -17.14745 -16.35877 -15.70340 -15.35487 -14.95177 -14.79265 -14.37549 -14.28002 -13.77600 -13.32431 -13.24115 -12.86520 -12.71062 -12.60061 -12.43110 -12.07292 -11.99753 -11.81721 -11.61153 -11.59554 -11.35676 -10.94248 -10.81924 -10.65092 -10.17208 -10.09549 -9.82543 -9.71274 -9.45415 -9.33922 -9.20068 -8.82531 -8.61375 -6.95966 -5.80117 -3.08291 1.32853 3.29665 3.30682 3.41140 3.47062 3.49126 4.56585 4.64429 4.72489 4.78326 4.99736 5.06657 5.07376 5.23384 5.25066 5.29175 5.40283 5.46212 5.54145 5.66036 5.73419 5.78349 5.86365 5.93470 5.99271 6.04259 6.08461 6.16141 6.20986 6.23500 6.33980 6.38512 6.43337 6.48082 6.56422 6.68541 6.79748 6.97075 7.08815 7.68062 7.70716 8.36619 8.38803 9.50336 10.08528 10.43425 11.42323 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021878 B = 0.004303 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.500330 B = 6505.397889 C = 7051.751234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.075 4.075 3 C -0.194 4.194 4 C -0.116 4.116 5 C 0.550 3.450 6 O -0.542 6.542 7 N -0.701 5.701 8 C 0.143 3.857 9 H 0.095 0.905 10 C -0.175 4.175 11 C 0.180 3.820 12 H 0.073 0.927 13 N -0.708 5.708 14 C -0.243 4.243 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.105 4.105 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.400 0.600 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.387 0.613 37 H 0.255 0.745 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 -18.050 7.248 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.094 4.094 3 C -0.197 4.197 4 C -0.173 4.173 5 C 0.339 3.661 6 O -0.421 6.421 7 N -0.351 5.351 8 C 0.037 3.963 9 H 0.113 0.887 10 C -0.217 4.217 11 C 0.068 3.932 12 H 0.091 0.909 13 N -0.346 5.346 14 C -0.374 4.374 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.128 4.128 23 C -0.161 4.161 24 C -0.177 4.177 25 C -0.143 4.143 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.140 0.860 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.222 0.778 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.302 -17.960 7.100 19.356 hybrid contribution 0.999 0.612 -0.661 1.345 sum -0.303 -17.347 6.439 18.506 Atomic orbital electron populations 1.21013 0.91780 1.00677 1.04260 1.23587 0.97223 0.96548 0.92076 1.21512 0.96383 0.93315 1.08446 1.20783 0.90991 1.03048 1.02463 1.18368 0.87287 0.84024 0.76463 1.90766 1.13571 1.87547 1.50221 1.45587 1.10168 1.05062 1.74259 1.21490 0.95497 0.81128 0.98139 0.88664 1.24288 1.02757 0.99150 0.95519 1.21381 0.94284 0.87023 0.90523 0.90878 1.42373 1.44611 1.01324 1.46333 1.19338 1.12798 0.91641 1.13607 0.91141 1.24744 0.99788 0.96023 1.00249 1.69666 1.41122 1.01994 1.45181 0.86138 0.80541 0.78496 0.81134 1.20574 1.21868 1.21883 1.23438 0.97698 0.95938 0.95725 1.22633 0.97373 1.00186 0.95860 1.22821 0.98474 0.99690 0.96752 1.22463 0.99577 0.98220 0.94002 0.90058 0.93270 0.90180 0.86033 0.91086 0.91237 0.91496 0.76473 0.89647 0.92376 0.77798 0.93509 0.92332 0.89672 0.91010 0.91915 0.88458 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.45 36.00 0.30 -0.98 16 2 C -0.07 -0.72 9.95 -36.13 -0.36 -1.08 16 3 C -0.19 -2.11 6.00 -102.85 -0.62 -2.72 16 4 C -0.12 -0.94 9.61 36.00 0.35 -0.59 16 5 C 0.55 7.76 7.72 -12.67 -0.10 7.67 16 6 O -0.54 -9.19 12.67 5.27 0.07 -9.12 16 7 N -0.70 -9.51 4.75 -54.55 -0.26 -9.77 16 8 C 0.14 2.25 4.12 -67.48 -0.28 1.97 16 9 H 0.10 1.60 7.46 -51.93 -0.39 1.22 16 10 C -0.17 -3.16 7.68 -25.75 -0.20 -3.36 16 11 C 0.18 3.47 4.27 -67.48 -0.29 3.19 16 12 H 0.07 1.39 8.10 -51.92 -0.42 0.97 16 13 N -0.71 -17.20 5.30 -52.99 -0.28 -17.48 16 14 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 18 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 C -0.13 -2.01 0.92 -154.71 -0.14 -2.16 16 23 C -0.12 -1.76 7.62 -26.28 -0.20 -1.96 16 24 C -0.14 -1.93 8.08 -25.75 -0.21 -2.14 16 25 C -0.10 -1.69 7.15 -26.28 -0.19 -1.88 16 26 H 0.08 1.02 7.22 -51.93 -0.37 0.64 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.97 7.22 -51.93 -0.37 0.60 16 29 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.07 0.54 6.70 -51.93 -0.35 0.20 16 33 H 0.40 4.72 6.52 -40.82 -0.27 4.46 16 34 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.39 9.94 6.23 -40.82 -0.25 9.68 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.06 0.74 7.58 -51.93 -0.39 0.35 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.80 7.02 -51.93 -0.36 1.43 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -30.60 345.16 -8.70 -39.29 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.95 Total: 12.95 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.17 Total: -11.22 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.18 Total: -54.19 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.60 -8.70 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202727146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.761 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds