Wall clock time and date at job start Tue Mar 31 2020 00:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32996 * 119.99633 * 2 1 4 4 C 1.50697 * 119.99633 * 179.97438 * 3 2 1 5 5 C 1.47098 * 119.99996 * 359.97438 * 3 2 1 6 6 O 1.21614 * 120.00279 * 0.02562 * 5 3 2 7 7 N 1.34777 * 119.99939 * 180.02562 * 5 3 2 8 8 C 1.46500 * 120.00024 * 180.02562 * 7 5 3 9 9 H 1.08994 * 112.95022 * 23.58942 * 8 7 5 10 10 C 1.53949 * 113.65758 * 252.18376 * 8 7 5 11 11 C 1.53954 * 87.29765 * 270.25786 * 10 8 7 12 12 H 1.09008 * 113.65560 * 89.74254 * 11 10 8 13 13 N 1.46501 * 113.74724 * 220.78064 * 11 10 8 14 14 C 1.36932 * 119.99879 * 252.22776 * 13 11 10 15 15 H 1.07995 * 120.00586 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99690 * 180.02562 * 14 13 11 17 17 N 1.31627 * 120.00194 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00147 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47123 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46979 * 119.99743 * 18 16 14 21 21 H 1.48495 * 109.47109 * 239.99887 * 18 16 14 22 22 C 1.52905 * 86.78040 * 335.26948 * 11 10 8 23 23 C 1.52917 * 121.13340 * 150.61456 * 22 11 10 24 24 C 1.53957 * 86.77928 * 150.61497 * 23 22 11 25 25 C 1.52909 * 121.13655 * 259.17353 * 22 11 10 26 26 H 1.09001 * 109.47230 * 60.00580 * 1 2 3 27 27 H 1.09002 * 109.47296 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47664 * 300.00043 * 1 2 3 29 29 H 1.08000 * 120.00155 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47130 * 269.99354 * 4 3 2 31 31 H 1.08997 * 109.47562 * 29.99592 * 4 3 2 32 32 H 1.09001 * 109.47027 * 150.00287 * 4 3 2 33 33 H 0.97006 * 120.00060 * 0.02562 * 7 5 3 34 34 H 1.09009 * 113.57633 * 155.65733 * 10 8 7 35 35 H 1.08998 * 113.58530 * 24.86787 * 10 8 7 36 36 H 0.97004 * 119.99468 * 72.23753 * 13 11 10 37 37 H 0.96999 * 120.00058 * 179.97438 * 17 16 14 38 38 H 1.08997 * 113.66031 * 265.08631 * 23 22 11 39 39 H 1.09002 * 113.66187 * 36.15037 * 23 22 11 40 40 H 1.09001 * 113.57949 * 89.86751 * 24 23 22 41 41 H 1.08996 * 113.58143 * 220.66411 * 24 23 22 42 42 H 1.09001 * 113.66026 * 323.85782 * 25 22 11 43 43 H 1.08998 * 113.65932 * 94.90900 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1518 0.0006 5 6 1.4363 2.4257 -0.0006 6 8 0.2202 2.4257 -0.0006 7 7 2.1101 3.5929 -0.0011 8 6 1.3776 4.8616 -0.0011 9 1 0.3687 4.7698 0.4010 10 6 1.4418 5.6120 -1.3438 11 6 2.7107 6.3038 -0.8132 12 1 3.6305 5.7651 -1.0415 13 7 2.7880 7.7288 -1.1442 14 6 3.6804 8.1655 -2.0865 15 1 4.3270 7.4594 -2.5861 16 6 3.7539 9.5158 -2.3996 17 7 2.9655 10.3765 -1.7911 18 14 4.9708 10.1115 -3.6856 19 1 5.7338 8.9544 -4.2186 20 1 4.2358 10.7721 -4.7941 21 1 5.9097 11.0815 -3.0669 22 6 2.1701 6.0280 0.5902 23 6 3.1147 5.8220 1.7750 24 6 1.9941 6.4013 2.6575 25 6 1.4776 7.1244 1.4004 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.0470 -0.9353 0.0004 30 1 4.0418 1.1522 1.0284 31 1 4.0425 0.2617 -0.5128 32 1 4.0424 2.0417 -0.5133 33 1 3.0802 3.5930 -0.0015 34 1 0.6068 6.2947 -1.5021 35 1 1.6249 4.9613 -2.1988 36 1 2.2070 8.3630 -0.6956 37 1 3.0172 11.3201 -2.0097 38 1 3.3365 4.7748 1.9807 39 1 4.0077 6.4460 1.7362 40 1 1.3065 5.6471 3.0401 41 1 2.3549 7.0777 3.4323 42 1 1.9105 8.1143 1.2562 43 1 0.3917 7.1176 1.3068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202727146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:23 Heat of formation + Delta-G solvation = 11.156581 kcal Electronic energy + Delta-G solvation = -22246.241716 eV Core-core repulsion = 19099.514343 eV Total energy + Delta-G solvation = -3146.727372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98577 -40.35894 -36.50297 -35.96359 -35.69798 -33.93436 -31.83747 -30.57195 -26.76278 -26.70820 -25.82991 -25.38079 -24.44862 -22.87746 -21.60459 -20.41869 -19.41654 -18.72364 -17.48882 -16.94470 -16.78849 -16.37286 -16.02156 -15.75331 -15.50465 -15.01253 -14.84064 -14.17819 -14.09051 -13.90209 -13.64736 -13.46585 -13.36267 -13.28262 -13.18602 -12.86656 -12.80210 -12.73008 -12.56065 -12.32332 -12.11659 -11.99868 -11.83039 -11.33773 -11.17358 -10.84682 -10.65181 -10.55514 -10.12865 -9.74233 -8.95055 -7.93833 -5.21448 0.47020 1.47497 1.48223 1.57841 2.18271 2.27875 2.56687 3.37391 3.45301 3.63891 3.74399 3.83255 3.94545 3.98544 3.98990 4.15265 4.29360 4.40730 4.50123 4.59892 4.63021 4.73832 4.81941 4.82489 4.86213 4.92265 4.95179 4.99477 5.05168 5.06447 5.09815 5.12889 5.25852 5.29960 5.48569 5.51227 5.54196 5.63768 5.68856 5.72461 6.28383 6.63111 7.28424 7.35198 8.12320 8.35998 9.29630 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021878 B = 0.004303 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.500330 B = 6505.397889 C = 7051.751234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 C -0.208 4.208 4 C -0.112 4.112 5 C 0.542 3.458 6 O -0.577 6.577 7 N -0.694 5.694 8 C 0.163 3.837 9 H 0.087 0.913 10 C -0.173 4.173 11 C 0.168 3.832 12 H 0.079 0.921 13 N -0.721 5.721 14 C -0.241 4.241 15 H 0.077 0.923 16 C -0.074 4.074 17 N -0.969 5.969 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.297 1.297 21 H -0.294 1.294 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.114 4.114 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.160 0.840 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.376 0.624 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 -20.744 7.864 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 C -0.211 4.211 4 C -0.169 4.169 5 C 0.333 3.667 6 O -0.459 6.459 7 N -0.344 5.344 8 C 0.056 3.944 9 H 0.105 0.895 10 C -0.215 4.215 11 C 0.058 3.942 12 H 0.097 0.903 13 N -0.358 5.358 14 C -0.373 4.373 15 H 0.095 0.905 16 C -0.266 4.266 17 N -0.620 5.620 18 Si 0.799 3.201 19 H -0.190 1.190 20 H -0.225 1.225 21 H -0.221 1.221 22 C -0.118 4.118 23 C -0.152 4.152 24 C -0.162 4.162 25 C -0.152 4.152 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.177 0.823 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.248 0.752 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.210 0.790 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.223 -20.719 7.722 22.112 hybrid contribution 0.444 1.354 -0.863 1.666 sum 0.667 -19.365 6.859 20.555 Atomic orbital electron populations 1.20970 0.92973 1.01671 1.02225 1.23923 0.96578 0.97723 0.89930 1.21597 0.97864 0.91712 1.09913 1.20817 0.88670 1.03880 1.03526 1.19038 0.87121 0.85073 0.75459 1.90760 1.15247 1.88085 1.51765 1.45497 1.10606 1.04182 1.74158 1.21117 0.95390 0.81935 0.95940 0.89519 1.24148 1.01360 0.99094 0.96921 1.21657 0.94919 0.84579 0.93031 0.90333 1.42529 1.44102 1.03189 1.46028 1.19730 1.12419 0.91836 1.13311 0.90547 1.25515 1.01988 0.96401 1.02727 1.69820 1.43175 1.01877 1.47103 0.85126 0.78384 0.78087 0.78490 1.18958 1.22465 1.22083 1.23282 0.98118 0.95879 0.94550 1.22590 0.96700 1.01525 0.94402 1.22765 0.98059 0.99598 0.95826 1.22451 0.99569 0.97144 0.96069 0.92407 0.90682 0.92078 0.82286 0.89849 0.89312 0.91805 0.75189 0.91479 0.92579 0.79024 0.94110 0.89943 0.90598 0.89557 0.90818 0.91168 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.45 71.24 0.60 -1.82 16 2 C -0.06 -1.02 9.95 24.52 0.24 -0.77 16 3 C -0.21 -3.99 6.00 -18.71 -0.11 -4.10 16 4 C -0.11 -1.42 9.61 71.24 0.68 -0.73 16 5 C 0.54 14.64 7.72 86.57 0.67 15.30 16 6 O -0.58 -19.49 12.67 -4.08 -0.05 -19.55 16 7 N -0.69 -17.81 4.75 -444.76 -2.11 -19.93 16 8 C 0.16 5.03 4.12 45.28 0.19 5.22 16 9 H 0.09 2.91 7.46 -2.39 -0.02 2.89 16 10 C -0.17 -6.34 7.68 31.23 0.24 -6.10 16 11 C 0.17 6.50 4.27 45.28 0.19 6.69 16 12 H 0.08 2.93 8.10 -2.38 -0.02 2.91 16 13 N -0.72 -35.75 5.30 -321.56 -1.70 -37.45 16 14 C -0.24 -13.20 9.97 84.04 0.84 -12.36 16 15 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 16 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 17 N -0.97 -59.05 13.06 21.65 0.28 -58.77 16 18 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 22 C -0.12 -3.66 0.92 -52.31 -0.05 -3.71 16 23 C -0.11 -3.06 7.62 30.89 0.24 -2.82 16 24 C -0.13 -3.23 8.08 31.23 0.25 -2.97 16 25 C -0.11 -3.71 7.15 30.88 0.22 -3.49 16 26 H 0.06 1.43 7.22 -2.39 -0.02 1.42 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.46 7.22 -2.39 -0.02 1.44 16 29 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 30 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.09 0.80 8.07 -2.39 -0.02 0.78 16 32 H 0.06 0.84 6.70 -2.39 -0.02 0.83 16 33 H 0.41 8.79 6.52 -92.70 -0.60 8.18 16 34 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.38 20.09 6.23 -92.71 -0.58 19.51 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.08 1.82 7.58 -2.39 -0.02 1.80 16 39 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 2.69 7.02 -2.39 -0.02 2.67 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -67.47 345.16 2.94 -64.53 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -0.18 Total: 38.67 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 4.67 Total: -15.42 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -3.53 Total: -116.15 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.55 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -67.47 2.94 -64.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202727146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.685 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds