Wall clock time and date at job start Tue Mar 31 2020 00:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 C 1.53000 * 109.47356 * 184.78619 * 3 2 1 5 5 N 1.46894 * 109.47121 * 184.06658 * 4 3 2 6 6 C 1.46906 * 110.99945 * 197.41269 * 5 4 3 7 7 C 1.50699 * 109.46927 * 66.04952 * 6 5 4 8 8 H 1.08005 * 120.00169 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99723 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00236 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99691 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47218 * 90.00348 * 11 9 7 13 13 H 1.48498 * 109.47165 * 209.99929 * 11 9 7 14 14 H 1.48502 * 109.47636 * 330.00046 * 11 9 7 15 15 C 1.46903 * 110.99828 * 73.46210 * 5 4 3 16 16 C 1.50702 * 109.46739 * 195.40143 * 15 5 4 17 17 C 1.38424 * 120.44378 * 254.06506 * 16 15 5 18 18 C 1.38783 * 118.48638 * 179.72389 * 17 16 15 19 19 C 1.38091 * 119.28650 * 0.28946 * 18 17 16 20 20 N 1.31936 * 120.83354 * 0.02562 * 19 18 17 21 21 C 1.32269 * 121.64805 * 359.97438 * 20 19 18 22 22 O 1.35675 * 119.68493 * 179.97438 * 21 20 19 23 23 C 1.42902 * 116.99993 * 354.37873 * 22 21 20 24 24 H 1.09002 * 109.47441 * 184.88408 * 1 2 3 25 25 H 1.09006 * 109.46826 * 304.87971 * 1 2 3 26 26 H 1.08995 * 109.47412 * 64.88071 * 1 2 3 27 27 H 1.08999 * 109.47102 * 240.00640 * 2 1 3 28 28 H 1.08999 * 109.47456 * 120.00132 * 2 1 3 29 29 H 1.09005 * 109.47019 * 64.78785 * 3 2 1 30 30 H 1.08999 * 109.47289 * 304.79278 * 3 2 1 31 31 H 1.09001 * 109.46923 * 64.06543 * 4 3 2 32 32 H 1.09003 * 109.47020 * 304.06969 * 4 3 2 33 33 H 1.09000 * 109.46976 * 186.04624 * 6 5 4 34 34 H 1.08994 * 109.46802 * 306.05048 * 6 5 4 35 35 H 0.97001 * 120.00027 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.47117 * 75.40424 * 15 5 4 37 37 H 1.08996 * 109.46969 * 315.39686 * 15 5 4 38 38 H 1.07998 * 120.75524 * 0.02562 * 17 16 15 39 39 H 1.07999 * 120.35911 * 180.25594 * 18 17 16 40 40 H 1.08000 * 119.58165 * 179.97438 * 19 18 17 41 41 H 1.09000 * 109.47212 * 184.76825 * 23 22 21 42 42 H 1.08999 * 109.47264 * 304.78034 * 23 22 21 43 43 H 1.09001 * 109.46405 * 64.77720 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4442 -0.1204 5 7 4.0626 2.8229 -0.0226 6 6 5.4357 2.9248 -0.5347 7 6 5.4415 2.6458 -2.0156 8 1 4.5176 2.4154 -2.5254 9 6 6.6263 2.6847 -2.7198 10 7 7.7512 2.9658 -2.0992 11 14 6.6335 2.3382 -4.5553 12 1 6.4376 3.6082 -5.2996 13 1 7.9347 1.7348 -4.9400 14 1 5.5341 1.3961 -4.8857 15 6 3.9778 3.3164 1.3585 16 6 4.1284 4.8159 1.3662 17 6 5.3032 5.4006 1.8066 18 6 5.4000 6.7850 1.7908 19 6 4.3275 7.5321 1.3454 20 7 3.2180 6.9461 0.9376 21 6 3.0878 5.6298 0.9378 22 8 1.9286 5.0692 0.5103 23 6 0.8557 5.9586 0.1943 24 1 -0.3634 -1.0239 0.0875 25 1 -0.3633 0.5877 0.8431 26 1 -0.3634 0.4362 -0.9304 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.7484 1.9310 0.9298 30 1 1.6083 1.9806 -0.8439 31 1 3.8542 1.0210 -1.0824 32 1 3.9938 0.8454 0.6834 33 1 5.8177 3.9293 -0.3527 34 1 6.0682 2.1977 -0.0255 35 1 8.5847 2.9927 -2.5946 36 1 4.7733 2.8684 1.9539 37 1 3.0106 3.0462 1.7821 38 1 6.1275 4.7932 2.1499 39 1 6.3042 7.2727 2.1238 40 1 4.3975 8.6097 1.3315 41 1 -0.0349 5.3805 -0.0521 42 1 0.6484 6.5974 1.0528 43 1 1.1354 6.5764 -0.6591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206576895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:04 Heat of formation + Delta-G solvation = -11.189248 kcal Electronic energy + Delta-G solvation = -22370.041236 eV Core-core repulsion = 19222.344876 eV Total energy + Delta-G solvation = -3147.696360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.29096 -37.47536 -37.09153 -34.36661 -32.80819 -31.95430 -30.61117 -28.53797 -27.29146 -26.82387 -24.82107 -22.91477 -22.53540 -21.89458 -20.64153 -19.72337 -17.93210 -16.67959 -16.34515 -15.64668 -15.46708 -14.97558 -14.66496 -14.33105 -14.04374 -13.90072 -13.71735 -13.09624 -12.97854 -12.79829 -12.52534 -12.27281 -12.02512 -11.86257 -11.63543 -11.47176 -10.96702 -10.88316 -10.85544 -10.68482 -10.65623 -10.61544 -10.22221 -9.93322 -9.76860 -9.32452 -9.26482 -9.10606 -8.39156 -7.97105 -7.13831 -5.99247 -3.99120 1.53180 1.69416 3.33897 3.39675 3.43421 3.52464 4.12840 4.46371 4.65486 4.95410 5.19468 5.29117 5.33184 5.36593 5.36766 5.46970 5.49422 5.54095 5.56820 5.65108 5.77336 5.84497 5.86112 6.03580 6.07467 6.14531 6.16709 6.23801 6.28629 6.43084 6.45519 6.54208 6.63597 6.81309 6.85747 6.94865 7.36836 7.39750 7.66821 7.85984 8.15383 8.22160 8.29781 8.61624 9.08731 9.64448 11.11749 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009834 B = 0.007553 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.642653 B = 3706.269427 C = 5552.066881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.110 4.110 4 C 0.064 3.936 5 N -0.526 5.526 6 C 0.193 3.807 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.104 3.896 16 C -0.127 4.127 17 C -0.036 4.036 18 C -0.212 4.212 19 C 0.125 3.875 20 N -0.548 5.548 21 C 0.339 3.661 22 O -0.286 6.286 23 C 0.042 3.958 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.016 0.984 33 H 0.031 0.969 34 H -0.012 1.012 35 H 0.260 0.740 36 H 0.031 0.969 37 H 0.074 0.926 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 2.968 8.864 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.148 4.148 4 C -0.064 4.064 5 N -0.250 5.250 6 C 0.068 3.932 7 C -0.541 4.541 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.198 1.198 15 C -0.024 4.024 16 C -0.130 4.130 17 C -0.062 4.062 18 C -0.232 4.232 19 C -0.030 4.030 20 N -0.272 5.272 21 C 0.160 3.840 22 O -0.192 6.192 23 C -0.054 4.054 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.034 0.966 33 H 0.049 0.951 34 H 0.006 0.994 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.169 0.831 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.348 3.497 8.196 14.428 hybrid contribution 1.427 -0.769 -0.376 1.664 sum -9.921 2.728 7.821 12.924 Atomic orbital electron populations 1.21747 0.96446 1.00767 1.01604 1.21516 0.95237 0.97920 1.01612 1.21592 0.96267 0.94980 1.02003 1.21994 0.93495 0.89516 1.01396 1.62059 1.26625 1.20240 1.16073 1.19735 0.81877 0.96536 0.95049 1.21170 0.93409 1.46489 0.93052 0.91917 1.24963 0.95546 0.95647 0.98427 1.69952 0.98322 1.49733 1.35916 0.86550 0.77207 0.78450 0.85526 1.20744 1.21356 1.19844 1.20776 1.00327 0.89153 0.92179 1.19866 0.92998 0.97038 1.03126 1.21365 0.95706 0.94755 0.94340 1.21856 1.00636 0.94549 1.06164 1.22209 0.87736 0.99666 0.93384 1.67263 1.28032 1.10624 1.21263 1.19532 0.86697 0.87452 0.90338 1.86373 1.19299 1.34218 1.79321 1.22759 0.87904 0.94171 1.00586 0.93429 0.93063 0.92882 0.92094 0.92692 0.92681 0.91550 0.89697 0.96617 0.95093 0.99444 0.93056 0.95087 0.90742 0.84605 0.85056 0.83088 0.89208 0.93107 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.15 0.37 -1.34 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.85 16 3 C -0.11 -1.79 5.35 -26.73 -0.14 -1.93 16 4 C 0.06 1.26 4.81 -3.83 -0.02 1.24 16 5 N -0.53 -11.48 4.39 -237.52 -1.04 -12.52 16 6 C 0.19 5.05 4.57 -4.97 -0.02 5.03 16 7 C -0.50 -14.29 8.26 -34.44 -0.28 -14.58 16 8 H 0.06 1.78 7.28 -52.48 -0.38 1.40 16 9 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 11 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 15 C 0.10 1.95 4.57 -4.97 -0.02 1.93 16 16 C -0.13 -2.35 4.66 -104.31 -0.49 -2.84 16 17 C -0.04 -0.60 9.11 -39.31 -0.36 -0.96 16 18 C -0.21 -3.12 10.11 -39.43 -0.40 -3.52 16 19 C 0.13 1.87 11.18 -17.56 -0.20 1.67 16 20 N -0.55 -9.46 9.22 -13.33 -0.12 -9.58 16 21 C 0.34 6.27 7.46 -17.13 -0.13 6.14 16 22 O -0.29 -5.05 9.84 -18.73 -0.18 -5.23 16 23 C 0.04 0.56 10.39 101.05 1.05 1.61 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.87 6.52 -51.93 -0.34 0.53 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.85 6.58 -51.93 -0.34 1.51 16 32 H 0.02 0.30 8.03 -51.93 -0.42 -0.12 16 33 H 0.03 0.87 6.69 -51.93 -0.35 0.52 16 34 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.03 0.57 7.91 -51.93 -0.41 0.16 16 37 H 0.07 1.28 6.24 -51.93 -0.32 0.96 16 38 H 0.14 2.12 8.04 -52.49 -0.42 1.70 16 39 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.63 8.06 -51.93 -0.42 0.21 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -31.69 352.40 -8.41 -40.10 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.19 Total: -1.03 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -0.90 Total: -7.91 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.43 Total: -48.26 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.18 Total: -5.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.69 -8.41 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206576895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.911 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds