Wall clock time and date at job start Tue Mar 31 2020 00:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 C 1.53000 * 109.47356 * 184.78619 * 3 2 1 5 5 N 1.46894 * 109.47121 * 184.06658 * 4 3 2 6 6 C 1.46906 * 110.99945 * 197.41269 * 5 4 3 7 7 C 1.50699 * 109.46927 * 66.04952 * 6 5 4 8 8 H 1.08005 * 120.00169 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99723 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00236 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99691 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47218 * 90.00348 * 11 9 7 13 13 H 1.48498 * 109.47165 * 209.99929 * 11 9 7 14 14 H 1.48502 * 109.47636 * 330.00046 * 11 9 7 15 15 C 1.46903 * 110.99828 * 73.46210 * 5 4 3 16 16 C 1.50702 * 109.46739 * 195.40143 * 15 5 4 17 17 C 1.38424 * 120.44378 * 254.06506 * 16 15 5 18 18 C 1.38783 * 118.48638 * 179.72389 * 17 16 15 19 19 C 1.38091 * 119.28650 * 0.28946 * 18 17 16 20 20 N 1.31936 * 120.83354 * 0.02562 * 19 18 17 21 21 C 1.32269 * 121.64805 * 359.97438 * 20 19 18 22 22 O 1.35675 * 119.68493 * 179.97438 * 21 20 19 23 23 C 1.42902 * 116.99993 * 354.37873 * 22 21 20 24 24 H 1.09002 * 109.47441 * 184.88408 * 1 2 3 25 25 H 1.09006 * 109.46826 * 304.87971 * 1 2 3 26 26 H 1.08995 * 109.47412 * 64.88071 * 1 2 3 27 27 H 1.08999 * 109.47102 * 240.00640 * 2 1 3 28 28 H 1.08999 * 109.47456 * 120.00132 * 2 1 3 29 29 H 1.09005 * 109.47019 * 64.78785 * 3 2 1 30 30 H 1.08999 * 109.47289 * 304.79278 * 3 2 1 31 31 H 1.09001 * 109.46923 * 64.06543 * 4 3 2 32 32 H 1.09003 * 109.47020 * 304.06969 * 4 3 2 33 33 H 1.09000 * 109.46976 * 186.04624 * 6 5 4 34 34 H 1.08994 * 109.46802 * 306.05048 * 6 5 4 35 35 H 0.97001 * 120.00027 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.47117 * 75.40424 * 15 5 4 37 37 H 1.08996 * 109.46969 * 315.39686 * 15 5 4 38 38 H 1.07998 * 120.75524 * 0.02562 * 17 16 15 39 39 H 1.07999 * 120.35911 * 180.25594 * 18 17 16 40 40 H 1.08000 * 119.58165 * 179.97438 * 19 18 17 41 41 H 1.09000 * 109.47212 * 184.76825 * 23 22 21 42 42 H 1.08999 * 109.47264 * 304.78034 * 23 22 21 43 43 H 1.09001 * 109.46405 * 64.77720 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4442 -0.1204 5 7 4.0626 2.8229 -0.0226 6 6 5.4357 2.9248 -0.5347 7 6 5.4415 2.6458 -2.0156 8 1 4.5176 2.4154 -2.5254 9 6 6.6263 2.6847 -2.7198 10 7 7.7512 2.9658 -2.0992 11 14 6.6335 2.3382 -4.5553 12 1 6.4376 3.6082 -5.2996 13 1 7.9347 1.7348 -4.9400 14 1 5.5341 1.3961 -4.8857 15 6 3.9778 3.3164 1.3585 16 6 4.1284 4.8159 1.3662 17 6 5.3032 5.4006 1.8066 18 6 5.4000 6.7850 1.7908 19 6 4.3275 7.5321 1.3454 20 7 3.2180 6.9461 0.9376 21 6 3.0878 5.6298 0.9378 22 8 1.9286 5.0692 0.5103 23 6 0.8557 5.9586 0.1943 24 1 -0.3634 -1.0239 0.0875 25 1 -0.3633 0.5877 0.8431 26 1 -0.3634 0.4362 -0.9304 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.7484 1.9310 0.9298 30 1 1.6083 1.9806 -0.8439 31 1 3.8542 1.0210 -1.0824 32 1 3.9938 0.8454 0.6834 33 1 5.8177 3.9293 -0.3527 34 1 6.0682 2.1977 -0.0255 35 1 8.5847 2.9927 -2.5946 36 1 4.7733 2.8684 1.9539 37 1 3.0106 3.0462 1.7821 38 1 6.1275 4.7932 2.1499 39 1 6.3042 7.2727 2.1238 40 1 4.3975 8.6097 1.3315 41 1 -0.0349 5.3805 -0.0521 42 1 0.6484 6.5974 1.0528 43 1 1.1354 6.5764 -0.6591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206576895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:03 Heat of formation + Delta-G solvation = -32.144990 kcal Electronic energy + Delta-G solvation = -22370.949945 eV Core-core repulsion = 19222.344876 eV Total energy + Delta-G solvation = -3148.605069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.57209 -38.87162 -38.56183 -35.67998 -34.77775 -33.44307 -31.89256 -30.10998 -28.89669 -28.03207 -26.42733 -24.58393 -23.82503 -23.29785 -21.95609 -21.34479 -19.18233 -18.55515 -17.91783 -16.98663 -16.86513 -16.55050 -16.15275 -15.88605 -15.50955 -15.30677 -14.96471 -14.52858 -14.28738 -14.18415 -13.88385 -13.71244 -13.65612 -13.32978 -13.16097 -12.79690 -12.68697 -12.60851 -12.24830 -12.12850 -12.02352 -11.96273 -11.85696 -11.45931 -11.32215 -11.19956 -10.65851 -10.57027 -10.54912 -9.25514 -8.91708 -8.19830 -6.28110 0.25447 0.41192 1.37746 1.38994 1.49936 2.32242 2.39054 2.84005 3.12468 3.41529 3.46897 3.94623 4.04925 4.10809 4.13702 4.27373 4.32467 4.42012 4.48999 4.49638 4.51384 4.58061 4.65428 4.80510 4.81119 4.86652 4.90917 5.04515 5.05788 5.14238 5.20180 5.22077 5.29670 5.36940 5.40362 5.52797 5.59399 5.60641 5.67032 6.09253 6.41024 6.44209 6.69072 6.88284 6.95537 7.40524 8.90954 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009834 B = 0.007553 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.642653 B = 3706.269427 C = 5552.066881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.096 4.096 4 C 0.065 3.935 5 N -0.533 5.533 6 C 0.214 3.786 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.004 3.996 10 N -0.931 5.931 11 Si 0.962 3.038 12 H -0.277 1.277 13 H -0.279 1.279 14 H -0.265 1.265 15 C 0.110 3.890 16 C -0.157 4.157 17 C -0.049 4.049 18 C -0.208 4.208 19 C 0.125 3.875 20 N -0.559 5.559 21 C 0.323 3.677 22 O -0.305 6.305 23 C 0.039 3.961 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.007 0.993 34 H -0.042 1.042 35 H 0.263 0.737 36 H 0.030 0.970 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.165 0.835 40 H 0.191 0.809 41 H 0.116 0.884 42 H 0.060 0.940 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 3.466 8.793 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.134 4.134 4 C -0.063 4.063 5 N -0.256 5.256 6 C 0.088 3.912 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.194 4.194 10 N -0.572 5.572 11 Si 0.786 3.214 12 H -0.202 1.202 13 H -0.205 1.205 14 H -0.189 1.189 15 C -0.018 4.018 16 C -0.160 4.160 17 C -0.075 4.075 18 C -0.228 4.228 19 C -0.030 4.030 20 N -0.283 5.283 21 C 0.144 3.856 22 O -0.212 6.212 23 C -0.056 4.056 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.025 0.975 34 H -0.024 1.024 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.156 0.844 39 H 0.182 0.818 40 H 0.208 0.792 41 H 0.135 0.865 42 H 0.079 0.921 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.478 3.987 8.136 15.420 hybrid contribution 1.780 -0.852 -0.292 1.995 sum -10.698 3.135 7.844 13.631 Atomic orbital electron populations 1.21706 0.94472 1.02054 1.01882 1.21492 0.96910 0.95784 1.01784 1.21455 0.93262 0.96927 1.01715 1.22019 0.95973 0.88335 0.99981 1.62010 1.23659 1.21588 1.18376 1.19315 0.83813 0.94030 0.94089 1.21445 0.93380 1.46651 0.94311 0.92521 1.25820 0.95091 0.95254 1.03210 1.70068 0.98918 1.50406 1.37789 0.85500 0.77671 0.78505 0.79679 1.20247 1.20469 1.18944 1.20760 1.00983 0.89815 0.90238 1.19958 0.94162 0.96766 1.05150 1.21607 0.95345 0.96162 0.94408 1.22236 1.01874 0.93625 1.05052 1.22944 0.86871 1.01545 0.91663 1.67344 1.29158 1.10073 1.21728 1.19684 0.87056 0.87988 0.90867 1.86327 1.19843 1.35640 1.79348 1.22968 0.87615 0.94401 1.00585 0.91724 0.92360 0.92995 0.92714 0.91800 0.91932 0.92852 0.92439 0.96206 0.97482 1.02395 0.92782 0.95196 0.89260 0.84383 0.81774 0.79179 0.86540 0.92131 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.91 71.98 0.71 -2.29 16 2 C -0.12 -3.15 5.93 30.59 0.18 -2.97 16 3 C -0.10 -3.06 5.35 30.60 0.16 -2.89 16 4 C 0.06 2.60 4.81 86.30 0.42 3.01 16 5 N -0.53 -23.95 4.39 -905.37 -3.98 -27.93 16 6 C 0.21 11.66 4.57 85.56 0.39 12.05 16 7 C -0.52 -30.36 8.26 25.60 0.21 -30.15 16 8 H 0.06 3.31 7.28 -2.91 -0.02 3.29 16 9 C 0.00 0.25 5.46 84.66 0.46 0.71 16 10 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 11 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 C 0.11 4.22 4.57 85.56 0.39 4.61 16 16 C -0.16 -5.91 4.66 -19.67 -0.09 -6.00 16 17 C -0.05 -1.66 9.11 22.44 0.20 -1.46 16 18 C -0.21 -5.80 10.11 22.37 0.23 -5.58 16 19 C 0.13 3.47 11.18 84.64 0.95 4.42 16 20 N -0.56 -18.74 9.22 -308.94 -2.85 -21.58 16 21 C 0.32 11.91 7.46 84.78 0.63 12.54 16 22 O -0.31 -10.69 9.84 -89.93 -0.88 -11.58 16 23 C 0.04 1.02 10.39 113.37 1.18 2.20 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.91 6.52 -2.38 -0.02 1.89 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 2.60 6.58 -2.39 -0.02 2.58 16 32 H 0.02 0.77 8.03 -2.39 -0.02 0.75 16 33 H 0.01 0.42 6.69 -2.39 -0.02 0.40 16 34 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 35 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.03 1.13 7.91 -2.39 -0.02 1.11 16 37 H 0.09 3.08 6.24 -2.39 -0.01 3.07 16 38 H 0.14 4.43 8.04 -2.91 -0.02 4.41 16 39 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.06 1.43 8.06 -2.39 -0.02 1.42 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -69.49 352.40 1.59 -67.90 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.96 Total: 13.85 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 6.03 Total: -11.79 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -6.54 Total: -105.88 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.88 Total: -11.58 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -69.49 1.59 -67.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206576895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.754 kcal (2) G-P(sol) polarization free energy of solvation -69.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds