Wall clock time and date at job start Tue Mar 31 2020 00:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 C 1.53002 * 109.47243 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46804 * 185.20101 * 4 3 2 6 6 C 1.46905 * 110.99678 * 160.01933 * 5 4 3 7 7 C 1.50707 * 109.47015 * 297.24017 * 6 5 4 8 8 H 1.08001 * 119.99801 * 354.73939 * 7 6 5 9 9 C 1.37869 * 119.99734 * 174.74261 * 7 6 5 10 10 N 1.31515 * 120.00227 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99865 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47067 * 359.97438 * 11 9 7 13 13 H 1.48490 * 109.47244 * 119.99676 * 11 9 7 14 14 H 1.48506 * 109.46900 * 239.99672 * 11 9 7 15 15 C 1.46897 * 111.00219 * 283.96896 * 5 4 3 16 16 C 1.50703 * 109.47042 * 170.00042 * 15 5 4 17 17 N 1.31837 * 119.65811 * 269.98199 * 16 15 5 18 18 C 1.31857 * 121.77908 * 179.72567 * 17 16 15 19 19 C 1.38257 * 120.88018 * 0.58829 * 18 17 16 20 20 C 1.38532 * 119.22623 * 359.42927 * 19 18 17 21 21 C 1.38709 * 119.65351 * 90.00540 * 16 15 5 22 22 O 1.35912 * 120.47542 * 359.97438 * 21 16 15 23 23 C 1.42902 * 116.99847 * 179.97438 * 22 21 16 24 24 H 1.09005 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47311 * 299.99761 * 1 2 3 26 26 H 1.08995 * 109.47376 * 60.00107 * 1 2 3 27 27 H 1.09000 * 109.47311 * 240.00239 * 2 1 3 28 28 H 1.08997 * 109.47865 * 120.00045 * 2 1 3 29 29 H 1.09000 * 109.47406 * 60.00322 * 3 2 1 30 30 H 1.09004 * 109.46754 * 300.00052 * 3 2 1 31 31 H 1.08993 * 109.47204 * 65.20138 * 4 3 2 32 32 H 1.08995 * 109.46891 * 305.19831 * 4 3 2 33 33 H 1.08997 * 109.47225 * 57.23888 * 6 5 4 34 34 H 1.09003 * 109.46832 * 177.24212 * 6 5 4 35 35 H 0.97005 * 119.99814 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.46742 * 50.00708 * 15 5 4 37 37 H 1.09000 * 109.47242 * 290.00511 * 15 5 4 38 38 H 1.07996 * 119.55480 * 180.28968 * 18 17 16 39 39 H 1.08002 * 120.38390 * 179.69667 * 19 18 17 40 40 H 1.07993 * 120.81450 * 180.30351 * 20 19 18 41 41 H 1.08999 * 109.47000 * 180.02562 * 23 22 21 42 42 H 1.08994 * 109.46939 * 300.00364 * 23 22 21 43 43 H 1.09002 * 109.46570 * 60.00095 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8218 0.1249 6 6 5.4505 2.8457 0.5971 7 6 5.5238 2.2393 1.9748 8 1 4.6176 1.9508 2.4867 9 6 6.7476 2.0530 2.5817 10 7 7.8511 2.4039 1.9582 11 14 6.8385 1.3007 4.2892 12 1 5.4668 0.9949 4.7690 13 1 7.6355 0.0489 4.2368 14 1 7.4853 2.2608 5.2193 15 6 3.9224 3.5469 -1.1453 16 6 4.1996 5.0110 -0.9204 17 7 3.2092 5.8212 -0.6028 18 6 3.4051 7.1079 -0.3916 19 6 4.6663 7.6622 -0.5082 20 6 5.7356 6.8464 -0.8402 21 6 5.4940 5.4923 -1.0501 22 8 6.5118 4.6532 -1.3776 23 6 7.8151 5.2280 -1.4921 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 1.0116 -0.9337 32 1 3.9336 0.8500 0.8389 33 1 6.0761 2.2715 -0.0863 34 1 5.8039 3.8762 0.6344 35 1 8.7122 2.2724 2.3852 36 1 2.9087 3.4234 -1.5264 37 1 4.6338 3.1494 -1.8692 38 1 2.5683 7.7380 -0.1287 39 1 4.8168 8.7180 -0.3381 40 1 6.7324 7.2514 -0.9332 41 1 8.5326 4.4516 -1.7577 42 1 7.8071 5.9950 -2.2665 43 1 8.0995 5.6759 -0.5400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206636858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:31 Heat of formation + Delta-G solvation = -9.062145 kcal Electronic energy + Delta-G solvation = -22417.446099 eV Core-core repulsion = 19269.841977 eV Total energy + Delta-G solvation = -3147.604122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.36362 -37.67577 -36.97415 -34.24489 -32.63323 -31.80217 -30.60731 -28.44667 -27.41593 -26.96893 -24.85852 -22.90013 -22.41199 -21.88637 -20.58786 -19.64313 -17.68533 -16.80030 -16.28613 -15.92659 -15.48231 -14.94787 -14.63677 -14.25366 -14.07025 -13.82586 -13.68486 -13.27069 -13.01232 -12.77505 -12.47951 -12.10868 -11.92136 -11.83392 -11.57811 -11.26160 -11.03655 -11.00606 -10.80424 -10.70717 -10.59876 -10.53178 -10.13629 -9.87912 -9.67928 -9.34232 -9.13104 -9.00663 -8.36543 -7.92102 -7.07150 -5.96256 -3.95638 1.48164 1.66061 3.32847 3.40308 3.46138 3.62381 4.11258 4.48427 4.74606 4.97062 5.01579 5.10294 5.30126 5.34998 5.39147 5.41673 5.52470 5.54570 5.57708 5.59394 5.85260 5.86350 5.91427 6.07063 6.13612 6.19816 6.21049 6.30262 6.34775 6.36244 6.47976 6.51489 6.61768 6.81118 6.88987 7.01272 7.48286 7.57368 7.63614 7.89212 8.21685 8.33616 8.43865 8.67630 9.13778 9.67281 11.14085 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.007848 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.323647 B = 3566.974258 C = 5591.858319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.112 4.112 4 C 0.063 3.937 5 N -0.530 5.530 6 C 0.196 3.804 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.110 3.890 16 C 0.128 3.872 17 N -0.435 5.435 18 C 0.050 3.950 19 C -0.142 4.142 20 C -0.173 4.173 21 C 0.099 3.901 22 O -0.290 6.290 23 C 0.033 3.967 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.017 0.983 32 H 0.088 0.912 33 H -0.004 1.004 34 H 0.032 0.968 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.152 0.848 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.100 0.900 42 H 0.045 0.955 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 5.676 -8.076 11.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.065 4.065 5 N -0.254 5.254 6 C 0.071 3.929 7 C -0.543 4.543 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.019 4.019 16 C -0.013 4.013 17 N -0.145 5.145 18 C -0.107 4.107 19 C -0.162 4.162 20 C -0.199 4.199 21 C 0.050 3.950 22 O -0.201 6.201 23 C -0.062 4.062 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.014 0.986 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.169 0.831 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.119 0.881 42 H 0.063 0.937 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.509 5.366 -7.667 11.399 hybrid contribution 1.910 -0.001 0.437 1.959 sum -4.599 5.365 -7.230 10.109 Atomic orbital electron populations 1.21752 0.96482 1.00787 1.01590 1.21501 0.95166 0.97825 1.01712 1.21610 0.96282 0.95210 1.01947 1.22012 0.93588 0.90455 1.00436 1.62119 1.25860 1.13280 1.24183 1.19771 0.81292 0.97269 0.94560 1.21291 0.92396 1.39614 1.00975 0.91937 1.24946 0.95739 0.96060 0.97775 1.69988 0.97444 1.48598 1.37645 0.86541 0.78088 0.78779 0.84636 1.19654 1.21177 1.21203 1.20771 1.00712 0.87467 0.92922 1.20674 0.85899 0.96675 0.98090 1.67495 1.33717 1.04279 1.08983 1.22511 0.96300 0.91510 1.00350 1.21848 0.93462 1.00532 1.00388 1.21611 1.00484 0.92911 1.04932 1.19961 0.89832 0.89418 0.95795 1.86280 1.15560 1.34916 1.83356 1.23002 0.82573 0.99900 1.00774 0.93413 0.92842 0.93108 0.92612 0.92012 0.91388 0.93013 0.96443 0.89375 0.98610 0.95008 0.93330 0.90425 0.93980 0.83112 0.85231 0.84802 0.88121 0.93677 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.15 0.37 -1.44 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.92 16 3 C -0.11 -1.90 5.25 -26.73 -0.14 -2.04 16 4 C 0.06 1.29 4.82 -3.82 -0.02 1.27 16 5 N -0.53 -12.08 4.44 -237.51 -1.06 -13.13 16 6 C 0.20 5.22 3.71 -4.97 -0.02 5.20 16 7 C -0.50 -14.44 8.07 -34.44 -0.28 -14.71 16 8 H 0.06 1.80 7.30 -52.49 -0.38 1.41 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 11 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 15 C 0.11 2.22 4.94 -4.98 -0.02 2.19 16 16 C 0.13 2.55 5.82 -82.41 -0.48 2.07 16 17 N -0.44 -8.21 10.27 -9.35 -0.10 -8.31 16 18 C 0.05 0.77 11.18 -17.53 -0.20 0.57 16 19 C -0.14 -2.01 10.11 -39.47 -0.40 -2.41 16 20 C -0.17 -2.73 9.14 -39.14 -0.36 -3.09 16 21 C 0.10 1.87 5.40 -39.07 -0.21 1.66 16 22 O -0.29 -5.63 7.85 -19.46 -0.15 -5.78 16 23 C 0.03 0.49 9.83 101.05 0.99 1.49 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.83 6.97 -51.93 -0.36 0.47 16 31 H 0.02 0.34 7.99 -51.93 -0.42 -0.07 16 32 H 0.09 1.97 6.42 -51.93 -0.33 1.64 16 33 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 34 H 0.03 0.91 5.26 -51.93 -0.27 0.63 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.08 1.43 6.73 -51.93 -0.35 1.08 16 37 H 0.04 0.85 7.50 -51.93 -0.39 0.46 16 38 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.13 1.75 6.45 -52.49 -0.34 1.42 16 41 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.04 0.53 7.70 -51.93 -0.40 0.13 16 43 H 0.06 0.88 7.70 -51.93 -0.40 0.48 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -32.05 345.86 -8.40 -40.45 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.01 Total: 0.02 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.02 Total: -9.67 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.41 Total: -47.17 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.15 Total: -5.78 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.05 -8.40 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206636858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.389 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds