Wall clock time and date at job start Tue Mar 31 2020 00:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 C 1.53002 * 109.47243 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46804 * 185.20101 * 4 3 2 6 6 C 1.46905 * 110.99678 * 160.01933 * 5 4 3 7 7 C 1.50707 * 109.47015 * 297.24017 * 6 5 4 8 8 H 1.08001 * 119.99801 * 354.73939 * 7 6 5 9 9 C 1.37869 * 119.99734 * 174.74261 * 7 6 5 10 10 N 1.31515 * 120.00227 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99865 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47067 * 359.97438 * 11 9 7 13 13 H 1.48490 * 109.47244 * 119.99676 * 11 9 7 14 14 H 1.48506 * 109.46900 * 239.99672 * 11 9 7 15 15 C 1.46897 * 111.00219 * 283.96896 * 5 4 3 16 16 C 1.50703 * 109.47042 * 170.00042 * 15 5 4 17 17 N 1.31837 * 119.65811 * 269.98199 * 16 15 5 18 18 C 1.31857 * 121.77908 * 179.72567 * 17 16 15 19 19 C 1.38257 * 120.88018 * 0.58829 * 18 17 16 20 20 C 1.38532 * 119.22623 * 359.42927 * 19 18 17 21 21 C 1.38709 * 119.65351 * 90.00540 * 16 15 5 22 22 O 1.35912 * 120.47542 * 359.97438 * 21 16 15 23 23 C 1.42902 * 116.99847 * 179.97438 * 22 21 16 24 24 H 1.09005 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47311 * 299.99761 * 1 2 3 26 26 H 1.08995 * 109.47376 * 60.00107 * 1 2 3 27 27 H 1.09000 * 109.47311 * 240.00239 * 2 1 3 28 28 H 1.08997 * 109.47865 * 120.00045 * 2 1 3 29 29 H 1.09000 * 109.47406 * 60.00322 * 3 2 1 30 30 H 1.09004 * 109.46754 * 300.00052 * 3 2 1 31 31 H 1.08993 * 109.47204 * 65.20138 * 4 3 2 32 32 H 1.08995 * 109.46891 * 305.19831 * 4 3 2 33 33 H 1.08997 * 109.47225 * 57.23888 * 6 5 4 34 34 H 1.09003 * 109.46832 * 177.24212 * 6 5 4 35 35 H 0.97005 * 119.99814 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.46742 * 50.00708 * 15 5 4 37 37 H 1.09000 * 109.47242 * 290.00511 * 15 5 4 38 38 H 1.07996 * 119.55480 * 180.28968 * 18 17 16 39 39 H 1.08002 * 120.38390 * 179.69667 * 19 18 17 40 40 H 1.07993 * 120.81450 * 180.30351 * 20 19 18 41 41 H 1.08999 * 109.47000 * 180.02562 * 23 22 21 42 42 H 1.08994 * 109.46939 * 300.00364 * 23 22 21 43 43 H 1.09002 * 109.46570 * 60.00095 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8218 0.1249 6 6 5.4505 2.8457 0.5971 7 6 5.5238 2.2393 1.9748 8 1 4.6176 1.9508 2.4867 9 6 6.7476 2.0530 2.5817 10 7 7.8511 2.4039 1.9582 11 14 6.8385 1.3007 4.2892 12 1 5.4668 0.9949 4.7690 13 1 7.6355 0.0489 4.2368 14 1 7.4853 2.2608 5.2193 15 6 3.9224 3.5469 -1.1453 16 6 4.1996 5.0110 -0.9204 17 7 3.2092 5.8212 -0.6028 18 6 3.4051 7.1079 -0.3916 19 6 4.6663 7.6622 -0.5082 20 6 5.7356 6.8464 -0.8402 21 6 5.4940 5.4923 -1.0501 22 8 6.5118 4.6532 -1.3776 23 6 7.8151 5.2280 -1.4921 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 1.0116 -0.9337 32 1 3.9336 0.8500 0.8389 33 1 6.0761 2.2715 -0.0863 34 1 5.8039 3.8762 0.6344 35 1 8.7122 2.2724 2.3852 36 1 2.9087 3.4234 -1.5264 37 1 4.6338 3.1494 -1.8692 38 1 2.5683 7.7380 -0.1287 39 1 4.8168 8.7180 -0.3381 40 1 6.7324 7.2514 -0.9332 41 1 8.5326 4.4516 -1.7577 42 1 7.8071 5.9950 -2.2665 43 1 8.0995 5.6759 -0.5400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206636858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:30 Heat of formation + Delta-G solvation = -29.922850 kcal Electronic energy + Delta-G solvation = -22418.350687 eV Core-core repulsion = 19269.841977 eV Total energy + Delta-G solvation = -3148.508710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68441 -39.00837 -38.64269 -35.63218 -34.65441 -33.19365 -31.95102 -30.06916 -29.04217 -28.27003 -26.51270 -24.62071 -23.70474 -23.30790 -21.95453 -21.33754 -18.98282 -18.60900 -17.92584 -17.32646 -16.94614 -16.58455 -16.24285 -15.80466 -15.46789 -15.23929 -15.14019 -14.56354 -14.39308 -14.18058 -13.92925 -13.69520 -13.63353 -13.17708 -13.08996 -12.91406 -12.65906 -12.55764 -12.32165 -12.23040 -12.07989 -12.00100 -11.79836 -11.47366 -11.27314 -11.13291 -10.60009 -10.57446 -10.41543 -9.27376 -8.91315 -8.16492 -6.24886 0.20320 0.39247 1.37492 1.38110 1.51681 2.36620 2.40112 2.79755 3.14663 3.42304 3.52203 3.74364 3.88514 4.10168 4.14042 4.25474 4.29554 4.33516 4.36621 4.41316 4.48706 4.54912 4.64238 4.69631 4.81332 4.85818 4.89376 5.02700 5.06345 5.13530 5.16685 5.22453 5.28641 5.39135 5.42393 5.53828 5.58407 5.61116 5.69486 6.12479 6.34306 6.42955 6.69423 6.92394 7.13322 7.42804 8.93663 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.007848 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.323647 B = 3566.974258 C = 5591.858319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.099 4.099 4 C 0.064 3.936 5 N -0.538 5.538 6 C 0.223 3.777 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.007 3.993 10 N -0.924 5.924 11 Si 0.960 3.040 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.279 1.279 15 C 0.117 3.883 16 C 0.089 3.911 17 N -0.459 5.459 18 C 0.044 3.956 19 C -0.126 4.126 20 C -0.175 4.175 21 C 0.075 3.925 22 O -0.324 6.324 23 C 0.029 3.971 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.061 0.939 33 H -0.041 1.041 34 H 0.012 0.988 35 H 0.262 0.738 36 H 0.091 0.909 37 H 0.031 0.969 38 H 0.188 0.812 39 H 0.177 0.823 40 H 0.160 0.840 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.532 6.967 -7.633 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.137 4.137 4 C -0.064 4.064 5 N -0.263 5.263 6 C 0.097 3.903 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.192 4.192 10 N -0.565 5.565 11 Si 0.785 3.215 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.204 1.204 15 C -0.012 4.012 16 C -0.050 4.050 17 N -0.169 5.169 18 C -0.114 4.114 19 C -0.146 4.146 20 C -0.201 4.201 21 C 0.026 3.974 22 O -0.236 6.236 23 C -0.066 4.066 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.080 0.920 33 H -0.023 1.023 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.049 0.951 38 H 0.204 0.796 39 H 0.194 0.806 40 H 0.178 0.822 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.455 6.642 -7.239 12.333 hybrid contribution 2.215 -0.284 0.256 2.248 sum -5.240 6.359 -6.983 10.801 Atomic orbital electron populations 1.21711 0.94378 1.02103 1.01939 1.21478 0.96943 0.95648 1.01829 1.21490 0.93274 0.97266 1.01672 1.22039 0.96053 0.89021 0.99274 1.62097 1.23248 1.14712 1.26201 1.19284 0.82859 0.95030 0.93125 1.21534 0.92461 1.40368 1.02006 0.92708 1.25787 0.95261 0.96297 1.01815 1.70105 0.97977 1.49073 1.39308 0.85477 0.78275 0.78158 0.79589 1.19179 1.20208 1.20428 1.20697 1.00961 0.88239 0.91262 1.20575 0.87057 0.96479 1.00857 1.67441 1.33839 1.05862 1.09718 1.23228 0.98309 0.90704 0.99119 1.22363 0.92165 1.02502 0.97560 1.22027 1.02440 0.91749 1.03917 1.20173 0.89444 0.90824 0.96934 1.86217 1.16978 1.36640 1.83776 1.23178 0.81034 1.00850 1.01541 0.91636 0.93000 0.92275 0.91766 0.92709 0.92777 0.91995 0.96273 0.92009 1.02346 0.96985 0.92941 0.89105 0.95135 0.79562 0.80599 0.82226 0.88048 0.90072 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.91 71.98 0.71 -2.51 16 2 C -0.12 -3.35 5.93 30.59 0.18 -3.17 16 3 C -0.10 -3.36 5.25 30.60 0.16 -3.20 16 4 C 0.06 2.72 4.82 86.30 0.42 3.13 16 5 N -0.54 -25.68 4.44 -905.35 -4.02 -29.71 16 6 C 0.22 12.53 3.71 85.56 0.32 12.84 16 7 C -0.53 -31.17 8.07 25.60 0.21 -30.97 16 8 H 0.05 3.26 7.30 -2.91 -0.02 3.24 16 9 C 0.01 0.39 5.46 84.65 0.46 0.85 16 10 N -0.92 -55.83 13.29 21.44 0.28 -55.55 16 11 Si 0.96 45.55 29.54 68.60 2.03 47.57 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 C 0.12 4.91 4.94 85.56 0.42 5.34 16 16 C 0.09 3.65 5.82 42.67 0.25 3.90 16 17 N -0.46 -17.10 10.27 -183.49 -1.88 -18.98 16 18 C 0.04 1.25 11.18 84.69 0.95 2.20 16 19 C -0.13 -3.16 10.11 22.34 0.23 -2.94 16 20 C -0.18 -5.24 9.14 22.56 0.21 -5.03 16 21 C 0.07 2.88 5.40 22.60 0.12 3.00 16 22 O -0.32 -13.14 7.85 -92.55 -0.73 -13.86 16 23 C 0.03 0.87 9.83 113.37 1.11 1.98 16 24 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.97 6.97 -2.38 -0.02 1.95 16 31 H 0.02 0.79 7.99 -2.39 -0.02 0.77 16 32 H 0.06 2.92 6.42 -2.39 -0.02 2.90 16 33 H -0.04 -2.56 8.14 -2.39 -0.02 -2.58 16 34 H 0.01 0.73 5.26 -2.39 -0.01 0.71 16 35 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 36 H 0.09 3.45 6.73 -2.39 -0.02 3.44 16 37 H 0.03 1.33 7.50 -2.39 -0.02 1.31 16 38 H 0.19 3.81 8.06 -2.91 -0.02 3.78 16 39 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 40 H 0.16 3.79 6.45 -2.91 -0.02 3.77 16 41 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.08 1.81 7.70 -2.39 -0.02 1.79 16 43 H 0.05 1.55 7.70 -2.39 -0.02 1.53 16 Total: -1.00 -72.20 345.86 2.40 -69.81 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.97 Total: 15.30 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 5.74 Total: -14.58 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -5.62 Total: -104.24 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.73 Total: -13.86 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.20 2.40 -69.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206636858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.884 kcal (2) G-P(sol) polarization free energy of solvation -72.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds