Wall clock time and date at job start Tue Mar 31 2020 00:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47215 * 2 1 4 4 C 1.52999 * 109.47215 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47028 * 179.68667 * 4 3 2 6 6 C 1.46906 * 110.99916 * 288.17197 * 5 4 3 7 7 C 1.50693 * 109.46988 * 160.36019 * 6 5 4 8 8 H 1.08001 * 120.00187 * 4.89493 * 7 6 5 9 9 C 1.37878 * 120.00263 * 184.89711 * 7 6 5 10 10 N 1.31511 * 120.00412 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99579 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47379 * 90.00014 * 11 9 7 13 13 H 1.48510 * 109.46975 * 210.00233 * 11 9 7 14 14 H 1.48502 * 109.47452 * 329.99908 * 11 9 7 15 15 C 1.46898 * 110.99966 * 164.21740 * 5 4 3 16 16 C 1.50701 * 109.47315 * 293.95512 * 15 5 4 17 17 C 1.38257 * 120.38540 * 269.99844 * 16 15 5 18 18 N 1.31848 * 120.88444 * 180.02562 * 17 16 15 19 19 C 1.31849 * 121.77636 * 0.02562 * 18 17 16 20 20 C 1.38701 * 120.68762 * 359.97359 * 19 18 17 21 21 O 1.35911 * 120.47477 * 179.97438 * 20 19 18 22 22 C 1.42901 * 117.00014 * 0.02562 * 21 20 19 23 23 C 1.38527 * 120.38738 * 89.99771 * 16 15 5 24 24 H 1.08994 * 109.47205 * 300.00123 * 1 2 3 25 25 H 1.09001 * 109.47175 * 60.00130 * 1 2 3 26 26 H 1.09002 * 109.46611 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47633 * 240.00060 * 2 1 3 28 28 H 1.09001 * 109.47175 * 119.99870 * 2 1 3 29 29 H 1.08994 * 109.47134 * 59.99833 * 3 2 1 30 30 H 1.09001 * 109.46942 * 300.00012 * 3 2 1 31 31 H 1.08998 * 109.47306 * 59.68695 * 4 3 2 32 32 H 1.09002 * 109.46937 * 299.68704 * 4 3 2 33 33 H 1.09001 * 109.46592 * 280.35687 * 6 5 4 34 34 H 1.09002 * 109.46858 * 40.35977 * 6 5 4 35 35 H 0.96998 * 119.99789 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.47350 * 173.95187 * 15 5 4 37 37 H 1.09002 * 109.47003 * 53.95431 * 15 5 4 38 38 H 1.07999 * 119.55785 * 0.04629 * 17 16 15 39 39 H 1.08002 * 119.65152 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.47214 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.46408 * 299.99766 * 22 21 20 42 42 H 1.09003 * 109.47253 * 59.99146 * 22 21 20 43 43 H 1.07998 * 120.81669 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 -0.0069 6 6 3.8324 3.4591 -1.3137 7 6 3.8841 4.9576 -1.1631 8 1 4.1453 5.3960 -0.2112 9 6 3.5979 5.7690 -2.2404 10 7 3.6425 7.0768 -2.1089 11 14 3.1467 5.0108 -3.8869 12 1 1.6758 4.8191 -3.9572 13 1 3.5813 5.9134 -4.9832 14 1 3.8244 3.6971 -4.0293 15 6 5.4792 2.8860 0.3664 16 6 5.6392 2.4570 1.8021 17 6 5.5740 3.3885 2.8217 18 7 5.7131 3.0241 4.0812 19 6 5.9193 1.7672 4.4216 20 6 5.9969 0.7756 3.4549 21 8 6.2101 -0.5187 3.8107 22 6 6.3461 -0.7940 5.2063 23 6 5.8534 1.1248 2.1157 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9237 -0.8863 32 1 3.9329 0.9337 0.8937 33 1 4.6050 3.1372 -2.0120 34 1 2.8539 3.1656 -1.6938 35 1 3.4414 7.6476 -2.8669 36 1 5.8440 3.9065 0.2492 37 1 6.0521 2.2192 -0.2781 38 1 5.4065 4.4285 2.5834 39 1 6.0289 1.5070 5.4641 40 1 6.5113 -1.8615 5.3517 41 1 7.1939 -0.2370 5.6054 42 1 5.4366 -0.4932 5.7264 43 1 5.9093 0.3758 1.3396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206994723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:08 Heat of formation + Delta-G solvation = -8.442122 kcal Electronic energy + Delta-G solvation = -21847.732925 eV Core-core repulsion = 18700.155689 eV Total energy + Delta-G solvation = -3147.577236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60194 -38.37216 -37.21035 -34.49701 -32.90691 -32.02897 -30.67674 -28.98086 -27.88792 -27.25068 -25.00986 -23.42784 -22.68925 -21.69706 -20.79848 -19.80857 -17.77047 -17.00768 -16.83491 -16.46004 -15.97652 -15.39296 -14.71852 -14.62385 -14.40952 -14.02957 -13.67926 -13.31621 -13.18727 -12.99263 -12.73133 -12.57027 -12.35427 -12.09396 -12.00363 -11.63356 -11.58893 -11.34917 -11.09903 -10.87469 -10.64874 -10.53594 -10.37076 -10.01657 -9.90004 -9.45753 -9.27048 -9.17605 -8.56321 -8.32600 -7.43091 -6.05337 -4.02253 1.25062 1.42261 3.08428 3.27388 3.35388 3.36649 3.90670 4.41335 4.57096 4.67506 4.72576 4.89996 4.93047 5.07351 5.16740 5.17907 5.24112 5.25791 5.31103 5.37237 5.47162 5.49980 5.63762 5.83403 5.95418 5.97411 6.03729 6.05470 6.09897 6.19429 6.31402 6.34723 6.45955 6.58802 6.67919 6.73415 6.81866 6.89355 7.18960 7.60893 7.86007 7.96690 8.12267 8.64594 9.04129 9.56573 11.07815 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.005094 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.693602 B = 5494.980239 C = 6807.843419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.114 4.114 4 C 0.047 3.953 5 N -0.519 5.519 6 C 0.162 3.838 7 C -0.507 4.507 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.899 5.899 11 Si 0.871 3.129 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.100 3.900 16 C -0.071 4.071 17 C 0.087 3.913 18 N -0.452 5.452 19 C 0.006 3.994 20 C 0.069 3.931 21 O -0.316 6.316 22 C 0.026 3.974 23 C -0.108 4.108 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.066 0.934 33 H -0.011 1.011 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.164 0.836 39 H 0.151 0.849 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -16.351 10.037 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.152 4.152 4 C -0.082 4.082 5 N -0.243 5.243 6 C 0.036 3.964 7 C -0.545 4.545 8 H 0.100 0.900 9 C -0.132 4.132 10 N -0.538 5.538 11 Si 0.699 3.301 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.029 4.029 16 C -0.074 4.074 17 C -0.071 4.071 18 N -0.161 5.161 19 C -0.152 4.152 20 C 0.022 3.978 21 O -0.228 6.228 22 C -0.069 4.069 23 C -0.135 4.135 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.007 0.993 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.053 0.947 38 H 0.181 0.819 39 H 0.169 0.831 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.342 -15.462 10.812 19.012 hybrid contribution 0.175 -1.358 -1.947 2.381 sum 2.518 -16.820 8.865 19.179 Atomic orbital electron populations 1.21752 0.96099 1.00927 1.01989 1.21499 0.95687 0.97519 1.01340 1.21584 0.95040 0.95431 1.03150 1.22225 0.95668 0.90698 0.99591 1.61976 1.14666 1.14631 1.33036 1.20241 0.95500 0.96067 0.84586 1.21023 1.46593 0.88125 0.98798 0.90032 1.24876 0.95199 0.94688 0.98430 1.69886 1.49675 1.02951 1.31297 0.86928 0.79243 0.79494 0.84475 1.20168 1.21216 1.19364 1.20974 0.90505 1.02700 0.88676 1.20900 0.95850 0.92332 0.98289 1.22714 0.96955 1.00828 0.86594 1.67578 1.09698 1.17813 1.21007 1.22789 1.04476 0.88822 0.99068 1.20003 0.98845 0.84272 0.94678 1.86055 1.87069 1.23278 1.26397 1.23060 1.01292 1.02616 0.79937 1.20843 1.02496 0.96530 0.93629 0.92745 0.92729 0.93283 0.92524 0.92490 0.91346 0.91563 0.95942 0.91583 0.99333 0.95308 0.92678 0.87899 0.94714 0.81855 0.83136 0.88233 0.92581 0.92535 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.60 5.93 -26.73 -0.16 -1.75 16 3 C -0.11 -1.85 5.28 -26.73 -0.14 -1.99 16 4 C 0.05 0.79 4.80 -3.82 -0.02 0.77 16 5 N -0.52 -10.37 4.37 -237.51 -1.04 -11.41 16 6 C 0.16 3.77 3.66 -4.98 -0.02 3.75 16 7 C -0.51 -13.91 9.17 -34.44 -0.32 -14.23 16 8 H 0.08 2.42 7.90 -52.49 -0.41 2.01 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 11 Si 0.87 21.13 27.37 -169.99 -4.65 16.48 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.28 6.69 56.52 0.38 -5.91 16 15 C 0.10 1.78 4.96 -4.98 -0.02 1.76 16 16 C -0.07 -1.14 4.94 -104.51 -0.52 -1.66 16 17 C 0.09 1.44 10.86 -17.54 -0.19 1.25 16 18 N -0.45 -7.25 10.36 -13.12 -0.14 -7.38 16 19 C 0.01 0.09 10.22 -17.37 -0.18 -0.09 16 20 C 0.07 0.94 6.71 -39.07 -0.26 0.68 16 21 O -0.32 -3.76 10.51 -19.46 -0.20 -3.97 16 22 C 0.03 0.20 9.82 101.05 0.99 1.19 16 23 C -0.11 -1.57 7.96 -39.14 -0.31 -1.88 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.18 6.52 -51.93 -0.34 0.84 16 31 H 0.02 0.37 8.05 -51.93 -0.42 -0.04 16 32 H 0.07 1.04 5.17 -51.93 -0.27 0.77 16 33 H -0.01 -0.26 7.40 -51.93 -0.38 -0.64 16 34 H 0.03 0.68 5.39 -51.93 -0.28 0.40 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.10 2.00 7.27 -51.93 -0.38 1.62 16 37 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.16 2.70 8.06 -52.49 -0.42 2.28 16 39 H 0.15 1.59 6.32 -52.49 -0.33 1.26 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.36 7.68 -51.93 -0.40 -0.04 16 42 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 43 H 0.14 1.81 7.76 -52.49 -0.41 1.41 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -30.78 345.73 -7.90 -38.68 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.98 Total: 0.43 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.87 Total: -11.73 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.40 Total: -45.10 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.20 Total: -3.97 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.65 Total: 16.48 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.78 -7.90 -38.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206994723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.236 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds