Wall clock time and date at job start Tue Mar 31 2020 00:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47215 * 2 1 4 4 C 1.52999 * 109.47215 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47028 * 179.68667 * 4 3 2 6 6 C 1.46906 * 110.99916 * 288.17197 * 5 4 3 7 7 C 1.50693 * 109.46988 * 160.36019 * 6 5 4 8 8 H 1.08001 * 120.00187 * 4.89493 * 7 6 5 9 9 C 1.37878 * 120.00263 * 184.89711 * 7 6 5 10 10 N 1.31511 * 120.00412 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99579 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47379 * 90.00014 * 11 9 7 13 13 H 1.48510 * 109.46975 * 210.00233 * 11 9 7 14 14 H 1.48502 * 109.47452 * 329.99908 * 11 9 7 15 15 C 1.46898 * 110.99966 * 164.21740 * 5 4 3 16 16 C 1.50701 * 109.47315 * 293.95512 * 15 5 4 17 17 C 1.38257 * 120.38540 * 269.99844 * 16 15 5 18 18 N 1.31848 * 120.88444 * 180.02562 * 17 16 15 19 19 C 1.31849 * 121.77636 * 0.02562 * 18 17 16 20 20 C 1.38701 * 120.68762 * 359.97359 * 19 18 17 21 21 O 1.35911 * 120.47477 * 179.97438 * 20 19 18 22 22 C 1.42901 * 117.00014 * 0.02562 * 21 20 19 23 23 C 1.38527 * 120.38738 * 89.99771 * 16 15 5 24 24 H 1.08994 * 109.47205 * 300.00123 * 1 2 3 25 25 H 1.09001 * 109.47175 * 60.00130 * 1 2 3 26 26 H 1.09002 * 109.46611 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47633 * 240.00060 * 2 1 3 28 28 H 1.09001 * 109.47175 * 119.99870 * 2 1 3 29 29 H 1.08994 * 109.47134 * 59.99833 * 3 2 1 30 30 H 1.09001 * 109.46942 * 300.00012 * 3 2 1 31 31 H 1.08998 * 109.47306 * 59.68695 * 4 3 2 32 32 H 1.09002 * 109.46937 * 299.68704 * 4 3 2 33 33 H 1.09001 * 109.46592 * 280.35687 * 6 5 4 34 34 H 1.09002 * 109.46858 * 40.35977 * 6 5 4 35 35 H 0.96998 * 119.99789 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.47350 * 173.95187 * 15 5 4 37 37 H 1.09002 * 109.47003 * 53.95431 * 15 5 4 38 38 H 1.07999 * 119.55785 * 0.04629 * 17 16 15 39 39 H 1.08002 * 119.65152 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.47214 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.46408 * 299.99766 * 22 21 20 42 42 H 1.09003 * 109.47253 * 59.99146 * 22 21 20 43 43 H 1.07998 * 120.81669 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 -0.0069 6 6 3.8324 3.4591 -1.3137 7 6 3.8841 4.9576 -1.1631 8 1 4.1453 5.3960 -0.2112 9 6 3.5979 5.7690 -2.2404 10 7 3.6425 7.0768 -2.1089 11 14 3.1467 5.0108 -3.8869 12 1 1.6758 4.8191 -3.9572 13 1 3.5813 5.9134 -4.9832 14 1 3.8244 3.6971 -4.0293 15 6 5.4792 2.8860 0.3664 16 6 5.6392 2.4570 1.8021 17 6 5.5740 3.3885 2.8217 18 7 5.7131 3.0241 4.0812 19 6 5.9193 1.7672 4.4216 20 6 5.9969 0.7756 3.4549 21 8 6.2101 -0.5187 3.8107 22 6 6.3461 -0.7940 5.2063 23 6 5.8534 1.1248 2.1157 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9237 -0.8863 32 1 3.9329 0.9337 0.8937 33 1 4.6050 3.1372 -2.0120 34 1 2.8539 3.1656 -1.6938 35 1 3.4414 7.6476 -2.8669 36 1 5.8440 3.9065 0.2492 37 1 6.0521 2.2192 -0.2781 38 1 5.4065 4.4285 2.5834 39 1 6.0289 1.5070 5.4641 40 1 6.5113 -1.8615 5.3517 41 1 7.1939 -0.2370 5.6054 42 1 5.4366 -0.4932 5.7264 43 1 5.9093 0.3758 1.3396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206994723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:07 Heat of formation + Delta-G solvation = -28.537753 kcal Electronic energy + Delta-G solvation = -21848.604337 eV Core-core repulsion = 18700.155689 eV Total energy + Delta-G solvation = -3148.448648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.71033 -39.49432 -38.55323 -35.71103 -34.77453 -33.53371 -31.79394 -30.49872 -29.19641 -28.25993 -26.34236 -24.71043 -24.14823 -23.03565 -21.95171 -21.32790 -18.99734 -18.77530 -17.99416 -17.63976 -17.01654 -16.71078 -16.15435 -16.08227 -15.79183 -15.34877 -14.95219 -14.59247 -14.40182 -14.28547 -14.14593 -13.87290 -13.77214 -13.36483 -13.31063 -12.81872 -12.74661 -12.55251 -12.38668 -12.37728 -12.11441 -11.88315 -11.77279 -11.67050 -11.44158 -11.31155 -10.74185 -10.49349 -10.45397 -9.41703 -9.00770 -8.24489 -6.26570 0.08479 0.26206 1.36083 1.36731 1.47106 2.21558 2.36363 2.69553 3.08597 3.31270 3.50325 3.64128 3.81450 3.97386 4.02447 4.12315 4.16591 4.27512 4.33579 4.41968 4.44464 4.46637 4.58535 4.65317 4.76839 4.79374 4.82378 4.89534 4.92953 4.99407 5.02721 5.05508 5.12479 5.25389 5.29439 5.41907 5.49491 5.51341 5.61438 6.02340 6.23722 6.36436 6.66611 6.79850 6.94701 7.36426 8.92232 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.005094 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.693602 B = 5494.980239 C = 6807.843419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.112 4.112 4 C 0.049 3.951 5 N -0.537 5.537 6 C 0.173 3.827 7 C -0.510 4.510 8 H 0.040 0.960 9 C 0.010 3.990 10 N -0.948 5.948 11 Si 0.941 3.059 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.251 1.251 15 C 0.106 3.894 16 C -0.077 4.077 17 C 0.066 3.934 18 N -0.469 5.469 19 C 0.009 3.991 20 C 0.080 3.920 21 O -0.323 6.323 22 C 0.013 3.987 23 C -0.109 4.109 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.081 0.919 33 H -0.010 1.010 34 H 0.032 0.968 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.146 0.854 39 H 0.184 0.816 40 H 0.125 0.875 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.591 -20.032 10.362 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.150 4.150 4 C -0.078 4.078 5 N -0.261 5.261 6 C 0.047 3.953 7 C -0.548 4.548 8 H 0.058 0.942 9 C -0.187 4.187 10 N -0.589 5.589 11 Si 0.765 3.235 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.174 1.174 15 C -0.022 4.022 16 C -0.080 4.080 17 C -0.091 4.091 18 N -0.178 5.178 19 C -0.149 4.149 20 C 0.032 3.968 21 O -0.235 6.235 22 C -0.081 4.081 23 C -0.136 4.136 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.008 0.992 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.164 0.836 39 H 0.201 0.799 40 H 0.143 0.857 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.277 -19.167 11.155 22.293 hybrid contribution 0.261 -0.279 -1.825 1.865 sum 2.538 -19.447 9.329 21.718 Atomic orbital electron populations 1.21753 0.95230 1.02169 1.01594 1.21450 0.96428 0.95105 1.02342 1.21572 0.94550 0.97501 1.01415 1.22291 0.96064 0.88802 1.00678 1.61843 1.16257 1.16864 1.31098 1.19962 0.95512 0.93436 0.86415 1.21263 1.45660 0.90726 0.97170 0.94182 1.25773 0.95227 0.94992 1.02718 1.70047 1.51463 1.04707 1.32698 0.85814 0.79378 0.79239 0.79119 1.19238 1.20904 1.17425 1.20825 0.89491 1.01474 0.90442 1.20598 0.97383 0.93226 0.96744 1.22526 0.98687 1.00456 0.87419 1.67566 1.10397 1.19379 1.20502 1.23316 1.02934 0.87901 1.00758 1.19978 0.97411 0.85217 0.94177 1.86065 1.86470 1.21754 1.29202 1.23452 1.02381 1.04576 0.77666 1.20932 1.02089 0.95807 0.94804 0.93038 0.93322 0.91198 0.91575 0.91334 0.92886 0.93496 0.94966 0.90081 0.99224 0.94997 0.92567 0.90808 0.93291 0.83621 0.79884 0.85701 0.91328 0.91484 0.83121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.12 -2.72 5.93 30.60 0.18 -2.53 16 3 C -0.11 -3.52 5.28 30.60 0.16 -3.36 16 4 C 0.05 1.60 4.80 86.30 0.41 2.02 16 5 N -0.54 -21.69 4.37 -905.35 -3.96 -25.65 16 6 C 0.17 8.15 3.66 85.55 0.31 8.46 16 7 C -0.51 -29.13 9.17 25.60 0.23 -28.90 16 8 H 0.04 2.55 7.90 -2.91 -0.02 2.53 16 9 C 0.01 0.58 5.47 84.66 0.46 1.04 16 10 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 11 Si 0.94 43.82 27.37 68.60 1.88 45.70 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.25 -10.84 6.69 99.48 0.67 -10.18 16 15 C 0.11 3.87 4.96 85.56 0.42 4.30 16 16 C -0.08 -2.49 4.94 -19.79 -0.10 -2.59 16 17 C 0.07 2.28 10.86 84.69 0.92 3.20 16 18 N -0.47 -14.93 10.36 -195.44 -2.02 -16.96 16 19 C 0.01 0.24 10.22 84.80 0.87 1.10 16 20 C 0.08 1.97 6.71 22.60 0.15 2.13 16 21 O -0.32 -6.56 10.51 -92.55 -0.97 -7.53 16 22 C 0.01 0.15 9.82 113.37 1.11 1.26 16 23 C -0.11 -2.99 7.96 22.56 0.18 -2.81 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.64 6.52 -2.39 -0.02 1.62 16 31 H 0.03 1.00 8.05 -2.39 -0.02 0.98 16 32 H 0.08 2.40 5.17 -2.39 -0.01 2.39 16 33 H -0.01 -0.46 7.40 -2.39 -0.02 -0.48 16 34 H 0.03 1.49 5.39 -2.39 -0.01 1.47 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.07 3.08 7.27 -2.38 -0.02 3.07 16 37 H 0.05 1.63 8.07 -2.39 -0.02 1.61 16 38 H 0.15 5.33 8.06 -2.91 -0.02 5.31 16 39 H 0.18 3.24 6.32 -2.91 -0.02 3.23 16 40 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.62 7.68 -2.39 -0.02 0.60 16 42 H 0.07 0.63 7.68 -2.39 -0.02 0.61 16 43 H 0.15 3.62 7.76 -2.91 -0.02 3.60 16 Total: -1.00 -68.51 345.73 2.19 -66.32 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.93 Total: 16.28 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 6.04 Total: -19.17 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -5.68 Total: -101.58 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.97 Total: -7.53 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Total: -68.51 2.19 -66.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206994723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.781 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds