Wall clock time and date at job start Tue Mar 31 2020 00:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32990 * 120.00112 * 2 1 4 4 C 1.47097 * 119.99931 * 172.16178 * 3 2 1 5 5 O 1.21620 * 120.00398 * 354.09133 * 4 3 2 6 6 N 1.34781 * 120.00217 * 174.08803 * 4 3 2 7 7 C 1.46503 * 120.00111 * 180.02562 * 6 4 3 8 8 C 1.53070 * 109.45342 * 84.78707 * 7 6 4 9 9 C 1.53201 * 109.29203 * 181.24326 * 8 7 6 10 10 N 1.46925 * 108.89041 * 305.57659 * 9 8 7 11 11 C 1.36936 * 120.63158 * 233.51361 * 10 9 8 12 12 H 1.07999 * 119.99979 * 147.72332 * 11 10 9 13 13 C 1.38808 * 119.99937 * 327.72895 * 11 10 9 14 14 N 1.31619 * 120.00180 * 343.63497 * 13 11 10 15 15 Si 1.86802 * 120.00388 * 163.63388 * 13 11 10 16 16 H 1.48506 * 109.46725 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46988 * 119.99486 * 15 13 11 18 18 H 1.48496 * 109.47526 * 240.00094 * 15 13 11 19 19 C 1.46926 * 118.74095 * 53.53954 * 10 9 8 20 20 C 1.53043 * 109.45739 * 204.99857 * 7 6 4 21 21 C 1.50706 * 119.99572 * 180.02562 * 2 1 3 22 22 C 1.52998 * 117.50196 * 357.11094 * 21 2 1 23 23 C 1.52999 * 117.49825 * 288.44948 * 21 2 1 24 24 H 1.08993 * 109.47320 * 89.99149 * 1 2 3 25 25 H 1.08998 * 109.46918 * 210.00092 * 1 2 3 26 26 H 1.09003 * 109.46446 * 329.99314 * 1 2 3 27 27 H 1.07997 * 119.99927 * 352.16604 * 3 2 1 28 28 H 0.97002 * 119.99362 * 0.02562 * 6 4 3 29 29 H 1.09000 * 109.45443 * 324.96636 * 7 6 4 30 30 H 1.08992 * 109.39182 * 61.37047 * 8 7 6 31 31 H 1.08996 * 109.62193 * 301.25542 * 8 7 6 32 32 H 1.08991 * 109.58431 * 185.71954 * 9 8 7 33 33 H 1.08997 * 109.58496 * 65.43510 * 9 8 7 34 34 H 0.96997 * 120.00549 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.59074 * 66.17562 * 19 10 9 36 36 H 1.09001 * 109.58668 * 186.45859 * 19 10 9 37 37 H 1.09002 * 109.49456 * 58.65620 * 20 7 6 38 38 H 1.09002 * 109.49584 * 298.56504 * 20 7 6 39 39 H 1.09007 * 115.54628 * 142.78523 * 21 2 1 40 40 H 1.08997 * 117.49566 * 0.02562 * 22 21 2 41 41 H 1.08998 * 117.49737 * 145.01993 * 22 21 2 42 42 H 1.08997 * 117.49932 * 214.98757 * 23 21 2 43 43 H 1.09000 * 117.49801 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6327 1.1576 0.1737 5 8 4.2195 0.1223 0.4244 6 7 4.3208 2.3104 0.0551 7 6 5.7757 2.3162 0.2275 8 6 6.4475 1.9441 -1.0966 9 6 7.9672 1.9209 -0.9041 10 7 8.3960 3.2116 -0.3485 11 6 9.3805 3.9416 -0.9592 12 1 9.3559 5.0206 -0.9200 13 6 10.4100 3.2948 -1.6289 14 7 10.6310 2.0148 -1.4169 15 14 11.4820 4.2410 -2.8311 16 1 11.0311 5.6548 -2.8894 17 1 12.8956 4.1911 -2.3790 18 1 11.3716 3.6297 -4.1799 19 6 7.7490 3.7040 0.8753 20 6 6.2320 3.7108 0.6624 21 6 2.2605 -1.3052 -0.0006 22 6 1.4399 -2.5947 0.0672 23 6 2.2417 -2.1323 1.2864 24 1 -0.3633 0.0002 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5140 27 1 1.6396 2.0826 -0.1275 28 1 3.8527 3.1362 -0.1445 29 1 6.0537 1.5889 0.9903 30 1 6.1880 2.6833 -1.8543 31 1 6.1062 0.9595 -1.4162 32 1 8.4546 1.7566 -1.8650 33 1 8.2361 1.1194 -0.2162 34 1 11.3507 1.5628 -1.8846 35 1 7.9979 3.0482 1.7096 36 1 8.0945 4.7153 1.0898 37 1 5.7350 3.9822 1.5938 38 1 5.9763 4.4349 -0.1113 39 1 3.1738 -1.3205 -0.5954 40 1 0.3550 -2.4991 0.1119 41 1 1.8134 -3.4585 -0.4827 42 1 3.1424 -2.6920 1.5382 43 1 1.6847 -1.7322 2.1337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226325780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:45 Heat of formation + Delta-G solvation = 18.643340 kcal Electronic energy + Delta-G solvation = -21812.710717 eV Core-core repulsion = 18666.307994 eV Total energy + Delta-G solvation = -3146.402722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.82739 -38.08518 -36.96692 -34.28805 -33.47149 -32.05037 -30.06735 -29.57899 -28.03245 -25.07355 -23.48348 -22.38907 -22.20061 -21.89870 -20.37729 -19.48855 -18.38260 -17.07522 -16.60395 -16.08185 -15.21285 -14.88102 -14.56398 -14.31538 -13.76588 -13.62809 -13.50056 -13.31893 -13.13240 -12.88484 -12.51853 -12.47822 -12.27370 -11.63223 -11.45369 -11.35256 -11.11660 -10.93775 -10.75844 -10.73611 -10.44342 -10.31508 -10.19134 -10.03621 -9.75199 -9.62530 -9.26295 -8.97865 -8.56574 -8.38202 -6.60502 -5.77412 -3.24140 1.32434 3.37689 3.45619 3.46444 3.47854 3.55458 3.92291 4.46231 4.50599 4.70272 4.93278 4.98364 5.05757 5.24394 5.29271 5.33950 5.40625 5.47459 5.49710 5.51127 5.66156 5.68200 5.83855 5.88203 6.07169 6.12313 6.19506 6.25863 6.29257 6.39858 6.49045 6.50291 6.66844 6.69383 6.81840 6.97139 7.02507 7.37501 7.66161 7.82542 7.87851 8.49117 8.57542 9.23074 9.85408 10.45171 11.31069 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032566 B = 0.003463 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.584760 B = 8083.218306 C = 8424.064620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.011 4.011 3 C -0.223 4.223 4 C 0.539 3.461 5 O -0.536 6.536 6 N -0.723 5.723 7 C 0.152 3.848 8 C -0.145 4.145 9 C 0.177 3.823 10 N -0.592 5.592 11 C -0.258 4.258 12 H 0.064 0.936 13 C 0.007 3.993 14 N -0.898 5.898 15 Si 0.901 3.099 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.149 3.851 20 C -0.139 4.139 21 C -0.110 4.110 22 C -0.193 4.193 23 C -0.153 4.153 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.393 0.607 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.021 0.979 34 H 0.254 0.746 35 H 0.019 0.981 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.765 -2.906 3.132 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.013 4.013 3 C -0.243 4.243 4 C 0.328 3.672 5 O -0.415 6.415 6 N -0.373 5.373 7 C 0.049 3.951 8 C -0.186 4.186 9 C 0.051 3.949 10 N -0.315 5.315 11 C -0.388 4.388 12 H 0.082 0.918 13 C -0.193 4.193 14 N -0.542 5.542 15 Si 0.731 3.269 16 H -0.202 1.202 17 H -0.217 1.217 18 H -0.215 1.215 19 C 0.021 3.979 20 C -0.179 4.179 21 C -0.128 4.128 22 C -0.230 4.230 23 C -0.190 4.190 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.142 0.858 28 H 0.227 0.773 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.172 -3.731 3.252 20.770 hybrid contribution 0.369 0.937 -0.799 1.285 sum -19.803 -2.795 2.454 20.150 Atomic orbital electron populations 1.21001 0.91337 1.03117 1.02893 1.21774 0.95029 0.93478 0.91033 1.22445 0.93981 0.98443 1.09479 1.18510 0.87478 0.83808 0.77383 1.90772 1.71033 1.31386 1.48314 1.46240 1.08939 1.09959 1.72129 1.20989 0.77367 0.98089 0.98685 1.22548 1.00051 0.99993 0.95960 1.20662 0.87770 0.87018 0.99475 1.44052 1.41382 1.21452 1.24567 1.19162 1.00641 0.89901 1.29054 0.91849 1.25168 0.96610 0.96217 1.01284 1.70049 1.31792 1.09597 1.42716 0.86258 0.80151 0.79442 0.81094 1.20198 1.21673 1.21540 1.20845 0.89050 0.98125 0.89834 1.22327 0.99925 0.95492 1.00109 1.21310 1.00391 0.88080 1.03043 1.23167 0.98402 0.98453 1.03008 1.22778 1.02126 1.02651 0.91416 0.90422 0.90840 0.91111 0.85753 0.77344 0.90146 0.92799 0.92901 0.90184 0.96054 0.93636 0.96266 0.92381 0.92702 0.91946 0.85291 0.88791 0.88734 0.88486 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.59 36.01 0.35 -0.58 16 2 C -0.01 -0.12 5.80 -101.16 -0.59 -0.71 16 3 C -0.22 -2.58 9.62 -37.81 -0.36 -2.94 16 4 C 0.54 8.25 7.63 -12.66 -0.10 8.15 16 5 O -0.54 -9.99 13.11 5.26 0.07 -9.92 16 6 N -0.72 -10.55 5.07 -54.93 -0.28 -10.82 16 7 C 0.15 2.72 2.41 -67.87 -0.16 2.55 16 8 C -0.15 -2.96 5.66 -26.59 -0.15 -3.11 16 9 C 0.18 4.38 5.27 -3.71 -0.02 4.36 16 10 N -0.59 -15.02 2.97 -172.32 -0.51 -15.53 16 11 C -0.26 -7.13 9.54 -15.06 -0.14 -7.27 16 12 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 13 C 0.01 0.19 4.89 -17.43 -0.09 0.10 16 14 N -0.90 -26.55 11.48 55.49 0.64 -25.91 16 15 Si 0.90 21.78 29.58 -169.99 -5.03 16.75 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 20 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 21 C -0.11 -1.35 4.13 -91.77 -0.38 -1.73 16 22 C -0.19 -1.85 9.82 -26.69 -0.26 -2.12 16 23 C -0.15 -1.72 10.23 -26.69 -0.27 -2.00 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.48 6.18 -51.93 -0.32 0.16 16 26 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.39 4.57 8.59 -40.82 -0.35 4.22 16 29 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.08 2.20 6.37 -51.93 -0.33 1.86 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.13 1.95 6.60 -51.92 -0.34 1.61 16 40 H 0.09 0.73 6.20 -51.93 -0.32 0.41 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 343.40 15.07 5.18 5.18 Total: -1.00 -31.61 343.40 -9.38 -40.99 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.09 Total: 3.96 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.35 Total: -4.70 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.15 Total: -52.27 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.61 -9.38 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226325780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.635 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds