Wall clock time and date at job start Tue Mar 31 2020 00:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32990 * 120.00112 * 2 1 4 4 C 1.47097 * 119.99931 * 172.16178 * 3 2 1 5 5 O 1.21620 * 120.00398 * 354.09133 * 4 3 2 6 6 N 1.34781 * 120.00217 * 174.08803 * 4 3 2 7 7 C 1.46503 * 120.00111 * 180.02562 * 6 4 3 8 8 C 1.53070 * 109.45342 * 84.78707 * 7 6 4 9 9 C 1.53201 * 109.29203 * 181.24326 * 8 7 6 10 10 N 1.46925 * 108.89041 * 305.57659 * 9 8 7 11 11 C 1.36936 * 120.63158 * 233.51361 * 10 9 8 12 12 H 1.07999 * 119.99979 * 147.72332 * 11 10 9 13 13 C 1.38808 * 119.99937 * 327.72895 * 11 10 9 14 14 N 1.31619 * 120.00180 * 343.63497 * 13 11 10 15 15 Si 1.86802 * 120.00388 * 163.63388 * 13 11 10 16 16 H 1.48506 * 109.46725 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46988 * 119.99486 * 15 13 11 18 18 H 1.48496 * 109.47526 * 240.00094 * 15 13 11 19 19 C 1.46926 * 118.74095 * 53.53954 * 10 9 8 20 20 C 1.53043 * 109.45739 * 204.99857 * 7 6 4 21 21 C 1.50706 * 119.99572 * 180.02562 * 2 1 3 22 22 C 1.52998 * 117.50196 * 357.11094 * 21 2 1 23 23 C 1.52999 * 117.49825 * 288.44948 * 21 2 1 24 24 H 1.08993 * 109.47320 * 89.99149 * 1 2 3 25 25 H 1.08998 * 109.46918 * 210.00092 * 1 2 3 26 26 H 1.09003 * 109.46446 * 329.99314 * 1 2 3 27 27 H 1.07997 * 119.99927 * 352.16604 * 3 2 1 28 28 H 0.97002 * 119.99362 * 0.02562 * 6 4 3 29 29 H 1.09000 * 109.45443 * 324.96636 * 7 6 4 30 30 H 1.08992 * 109.39182 * 61.37047 * 8 7 6 31 31 H 1.08996 * 109.62193 * 301.25542 * 8 7 6 32 32 H 1.08991 * 109.58431 * 185.71954 * 9 8 7 33 33 H 1.08997 * 109.58496 * 65.43510 * 9 8 7 34 34 H 0.96997 * 120.00549 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.59074 * 66.17562 * 19 10 9 36 36 H 1.09001 * 109.58668 * 186.45859 * 19 10 9 37 37 H 1.09002 * 109.49456 * 58.65620 * 20 7 6 38 38 H 1.09002 * 109.49584 * 298.56504 * 20 7 6 39 39 H 1.09007 * 115.54628 * 142.78523 * 21 2 1 40 40 H 1.08997 * 117.49566 * 0.02562 * 22 21 2 41 41 H 1.08998 * 117.49737 * 145.01993 * 22 21 2 42 42 H 1.08997 * 117.49932 * 214.98757 * 23 21 2 43 43 H 1.09000 * 117.49801 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6327 1.1576 0.1737 5 8 4.2195 0.1223 0.4244 6 7 4.3208 2.3104 0.0551 7 6 5.7757 2.3162 0.2275 8 6 6.4475 1.9441 -1.0966 9 6 7.9672 1.9209 -0.9041 10 7 8.3960 3.2116 -0.3485 11 6 9.3805 3.9416 -0.9592 12 1 9.3559 5.0206 -0.9200 13 6 10.4100 3.2948 -1.6289 14 7 10.6310 2.0148 -1.4169 15 14 11.4820 4.2410 -2.8311 16 1 11.0311 5.6548 -2.8894 17 1 12.8956 4.1911 -2.3790 18 1 11.3716 3.6297 -4.1799 19 6 7.7490 3.7040 0.8753 20 6 6.2320 3.7108 0.6624 21 6 2.2605 -1.3052 -0.0006 22 6 1.4399 -2.5947 0.0672 23 6 2.2417 -2.1323 1.2864 24 1 -0.3633 0.0002 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5140 27 1 1.6396 2.0826 -0.1275 28 1 3.8527 3.1362 -0.1445 29 1 6.0537 1.5889 0.9903 30 1 6.1880 2.6833 -1.8543 31 1 6.1062 0.9595 -1.4162 32 1 8.4546 1.7566 -1.8650 33 1 8.2361 1.1194 -0.2162 34 1 11.3507 1.5628 -1.8846 35 1 7.9979 3.0482 1.7096 36 1 8.0945 4.7153 1.0898 37 1 5.7350 3.9822 1.5938 38 1 5.9763 4.4349 -0.1113 39 1 3.1738 -1.3205 -0.5954 40 1 0.3550 -2.4991 0.1119 41 1 1.8134 -3.4585 -0.4827 42 1 3.1424 -2.6920 1.5382 43 1 1.6847 -1.7322 2.1337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226325780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:44 Heat of formation + Delta-G solvation = -0.705313 kcal Electronic energy + Delta-G solvation = -21813.549737 eV Core-core repulsion = 18666.307994 eV Total energy + Delta-G solvation = -3147.241743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03928 -39.34946 -38.31144 -35.91789 -34.35510 -33.82266 -31.80768 -31.30226 -28.90428 -26.89021 -24.65765 -23.93239 -23.48872 -23.14419 -21.60834 -21.12676 -19.50544 -18.71375 -17.94391 -17.30786 -16.80024 -16.25627 -15.84019 -15.73367 -15.39225 -15.22371 -14.81723 -14.44094 -14.35308 -14.02086 -13.95505 -13.86628 -13.20684 -13.10899 -13.04882 -12.69429 -12.60685 -12.47034 -12.17852 -12.10231 -12.02962 -11.87793 -11.65939 -11.53551 -11.38094 -11.25162 -10.61301 -10.46489 -10.05509 -9.66630 -8.68478 -7.89965 -5.40844 0.41697 1.45715 1.47097 1.58448 2.32638 2.38909 2.49679 3.05657 3.26286 3.62720 3.65531 3.83674 3.92657 4.05263 4.07705 4.18201 4.27695 4.32652 4.44902 4.46970 4.64422 4.66768 4.76527 4.78797 4.84593 4.86475 4.97728 5.03255 5.06178 5.10740 5.13774 5.24420 5.28696 5.29199 5.39904 5.46444 5.61319 5.64038 5.64976 5.69986 6.38335 6.75579 7.11512 7.43191 7.80779 8.36687 9.17112 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032566 B = 0.003463 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.584760 B = 8083.218306 C = 8424.064620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.001 4.001 3 C -0.236 4.236 4 C 0.531 3.469 5 O -0.579 6.579 6 N -0.711 5.711 7 C 0.164 3.836 8 C -0.128 4.128 9 C 0.188 3.812 10 N -0.609 5.609 11 C -0.266 4.266 12 H 0.072 0.928 13 C -0.051 4.051 14 N -0.937 5.937 15 Si 0.970 3.030 16 H -0.261 1.261 17 H -0.292 1.292 18 H -0.291 1.291 19 C 0.142 3.858 20 C -0.121 4.121 21 C -0.137 4.137 22 C -0.166 4.166 23 C -0.163 4.163 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.161 0.839 28 H 0.413 0.587 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.046 0.954 33 H -0.012 1.012 34 H 0.250 0.750 35 H 0.009 0.991 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.076 -1.127 3.081 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.003 4.003 3 C -0.257 4.257 4 C 0.322 3.678 5 O -0.461 6.461 6 N -0.362 5.362 7 C 0.059 3.941 8 C -0.168 4.168 9 C 0.061 3.939 10 N -0.332 5.332 11 C -0.396 4.396 12 H 0.089 0.911 13 C -0.246 4.246 14 N -0.582 5.582 15 Si 0.798 3.202 16 H -0.185 1.185 17 H -0.219 1.219 18 H -0.218 1.218 19 C 0.016 3.984 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.203 4.203 23 C -0.200 4.200 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.178 0.822 28 H 0.249 0.751 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.006 0.994 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.140 0.860 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.534 -1.903 3.212 23.828 hybrid contribution 1.404 0.291 -0.731 1.609 sum -22.129 -1.612 2.481 22.326 Atomic orbital electron populations 1.21085 0.88028 1.04582 1.04255 1.22142 0.97114 0.92214 0.88788 1.22493 0.91405 1.00433 1.11359 1.19259 0.89219 0.83034 0.76310 1.90771 1.72265 1.32914 1.50183 1.45962 1.07229 1.10985 1.72049 1.20575 0.79445 0.98034 0.96056 1.22287 0.96917 0.99770 0.97871 1.20363 0.90441 0.86340 0.96760 1.44302 1.41576 1.21188 1.26169 1.19555 1.00780 0.90503 1.28792 0.91080 1.26007 0.98307 0.97086 1.03222 1.70217 1.32616 1.11388 1.44015 0.85175 0.77966 0.78784 0.78312 1.18477 1.21887 1.21806 1.21042 0.91589 0.98030 0.87765 1.22121 0.96764 0.94852 1.02279 1.21237 1.00339 0.90518 1.03378 1.23261 0.99544 0.96745 1.00700 1.22794 1.02293 1.02884 0.92059 0.88839 0.89769 0.89293 0.82166 0.75063 0.92922 0.92086 0.93859 0.93594 0.99383 0.94134 0.97339 0.91406 0.89180 0.90632 0.89167 0.85951 0.88500 0.90230 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.59 71.24 0.68 -0.59 16 2 C 0.00 -0.01 5.80 -17.61 -0.10 -0.11 16 3 C -0.24 -4.93 9.62 23.43 0.23 -4.70 16 4 C 0.53 15.94 7.63 86.57 0.66 16.60 16 5 O -0.58 -22.46 13.11 -4.09 -0.05 -22.51 16 6 N -0.71 -19.67 5.07 -445.94 -2.26 -21.93 16 7 C 0.16 5.81 2.41 45.03 0.11 5.92 16 8 C -0.13 -5.35 5.66 30.69 0.17 -5.18 16 9 C 0.19 9.76 5.27 86.37 0.46 10.21 16 10 N -0.61 -31.50 2.97 -699.11 -2.08 -33.57 16 11 C -0.27 -14.84 9.54 84.03 0.80 -14.03 16 12 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 13 C -0.05 -2.89 4.89 84.86 0.42 -2.47 16 14 N -0.94 -57.66 11.48 21.65 0.25 -57.41 16 15 Si 0.97 45.43 29.58 68.60 2.03 47.46 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 C 0.14 5.90 6.52 86.36 0.56 6.46 16 20 C -0.12 -3.87 5.55 30.67 0.17 -3.70 16 21 C -0.14 -3.31 4.13 -11.54 -0.05 -3.36 16 22 C -0.17 -2.90 9.82 30.62 0.30 -2.59 16 23 C -0.16 -3.65 10.23 30.62 0.31 -3.33 16 24 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.08 0.72 6.18 -2.39 -0.01 0.70 16 26 H 0.09 0.66 8.07 -2.39 -0.02 0.64 16 27 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 28 H 0.41 8.29 8.59 -92.71 -0.80 7.50 16 29 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 2.67 6.37 -2.39 -0.02 2.65 16 33 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 37 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.09 2.91 6.60 -2.38 -0.02 2.89 16 40 H 0.12 1.45 6.20 -2.39 -0.01 1.43 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -72.92 343.40 2.80 -70.11 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.20 Total: 18.73 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 4.72 Total: -0.87 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -4.09 Total: -112.92 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.05 Total: -22.51 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.92 2.80 -70.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226325780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.409 kcal (2) G-P(sol) polarization free energy of solvation -72.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds