Wall clock time and date at job start Tue Mar 31 2020 00:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32991 * 119.99586 * 2 1 4 4 C 1.47105 * 120.00485 * 352.35878 * 3 2 1 5 5 O 1.21617 * 119.99315 * 354.45230 * 4 3 2 6 6 N 1.34776 * 120.00426 * 174.44971 * 4 3 2 7 7 C 1.46498 * 119.99843 * 179.97438 * 6 4 3 8 8 C 1.53076 * 109.45097 * 84.79222 * 7 6 4 9 9 C 1.53194 * 109.29684 * 181.23988 * 8 7 6 10 10 N 1.46920 * 108.89227 * 305.57904 * 9 8 7 11 11 C 1.36940 * 120.63050 * 233.51275 * 10 9 8 12 12 H 1.08004 * 119.99713 * 147.61712 * 11 10 9 13 13 C 1.38806 * 120.00092 * 327.62419 * 11 10 9 14 14 N 1.31611 * 120.00463 * 168.01521 * 13 11 10 15 15 Si 1.86801 * 119.99765 * 348.01316 * 13 11 10 16 16 H 1.48492 * 109.47456 * 88.99576 * 15 13 11 17 17 H 1.48500 * 109.47101 * 208.99496 * 15 13 11 18 18 H 1.48505 * 109.47293 * 328.99218 * 15 13 11 19 19 C 1.46932 * 118.74290 * 53.53318 * 10 9 8 20 20 C 1.53037 * 109.46074 * 204.99746 * 7 6 4 21 21 C 1.50693 * 120.00255 * 179.97438 * 2 1 3 22 22 C 1.53002 * 117.49866 * 8.62652 * 21 2 1 23 23 C 1.52997 * 117.50180 * 300.00256 * 21 2 1 24 24 H 1.09004 * 109.47265 * 86.17187 * 1 2 3 25 25 H 1.09005 * 109.46974 * 206.17001 * 1 2 3 26 26 H 1.08996 * 109.47278 * 326.16357 * 1 2 3 27 27 H 1.08007 * 120.00124 * 172.36548 * 3 2 1 28 28 H 0.97003 * 119.99737 * 359.97438 * 6 4 3 29 29 H 1.08996 * 109.46491 * 324.97400 * 7 6 4 30 30 H 1.09000 * 109.39306 * 61.36213 * 8 7 6 31 31 H 1.09000 * 109.62042 * 301.25954 * 8 7 6 32 32 H 1.08997 * 109.58926 * 185.71750 * 9 8 7 33 33 H 1.08998 * 109.58064 * 65.43340 * 9 8 7 34 34 H 0.96999 * 120.00946 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.57957 * 66.17908 * 19 10 9 36 36 H 1.08996 * 109.59260 * 186.46174 * 19 10 9 37 37 H 1.09007 * 109.49700 * 58.66575 * 20 7 6 38 38 H 1.08999 * 109.50272 * 298.57540 * 20 7 6 39 39 H 1.09002 * 115.54982 * 154.33108 * 21 2 1 40 40 H 1.09000 * 117.50068 * 359.97438 * 22 21 2 41 41 H 1.09003 * 117.50053 * 145.01910 * 22 21 2 42 42 H 1.09003 * 117.50132 * 214.97739 * 23 21 2 43 43 H 1.08996 * 117.50019 * 359.97201 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4462 2.4201 -0.1694 5 8 0.2541 2.4110 -0.4100 6 7 2.1023 3.5921 -0.0579 7 6 1.3795 4.8551 -0.2271 8 6 0.7319 5.2538 1.1013 9 6 -0.0484 6.5586 0.9127 10 7 0.8514 7.5736 0.3482 11 6 0.9970 8.7922 0.9557 12 1 1.9444 9.3088 0.9096 13 6 -0.0728 9.3634 1.6309 14 7 0.1214 10.4074 2.4085 15 14 -1.7883 8.6504 1.4359 16 1 -2.0035 7.5923 2.4553 17 1 -2.7954 9.7263 1.6191 18 1 -1.9301 8.0658 0.0781 19 6 1.5917 7.2567 -0.8808 20 6 2.3565 5.9460 -0.6714 21 6 2.2605 -1.3050 0.0006 22 6 1.4518 -2.5878 -0.2024 23 6 2.0262 -2.2556 1.1762 24 1 -0.3634 0.0686 -1.0254 25 1 -0.3633 -0.9224 0.4533 26 1 -0.3633 0.8536 0.5722 27 1 3.2448 1.1560 0.1243 28 1 3.0530 3.5993 0.1345 29 1 0.6047 4.7316 -0.9837 30 1 1.5078 5.3994 1.8529 31 1 0.0518 4.4670 1.4277 32 1 -0.4267 6.9007 1.8759 33 1 -0.8824 6.3901 0.2314 34 1 -0.6263 10.8068 2.8800 35 1 0.8926 7.1434 -1.7094 36 1 2.2936 8.0605 -1.1022 37 1 2.8326 5.6494 -1.6061 38 1 3.1175 6.0875 0.0960 39 1 3.2632 -1.2691 -0.4254 40 1 0.3746 -2.4879 -0.3359 41 1 1.9223 -3.3962 -0.7622 42 1 2.8745 -2.8455 1.5235 43 1 1.3273 -1.9370 1.9496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226325783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:50 Heat of formation + Delta-G solvation = 24.729738 kcal Electronic energy + Delta-G solvation = -21711.231326 eV Core-core repulsion = 18565.092530 eV Total energy + Delta-G solvation = -3146.138796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98059 -38.41112 -37.47749 -34.60569 -33.25595 -32.16182 -30.40347 -30.20726 -27.78670 -25.27491 -23.93499 -22.83439 -22.73329 -21.85742 -20.36069 -19.75085 -18.54715 -16.99576 -16.85828 -16.35796 -15.66937 -15.05567 -14.87145 -14.59968 -14.16645 -13.77681 -13.61568 -13.41059 -13.17323 -12.88733 -12.80960 -12.28740 -12.16885 -11.91806 -11.80717 -11.77043 -11.54168 -11.21613 -11.02099 -10.88376 -10.79852 -10.56589 -10.08656 -10.01546 -9.82108 -9.50296 -9.39614 -9.14502 -8.71894 -8.55647 -6.90199 -5.92303 -3.36699 1.22368 3.28302 3.34961 3.35810 3.50458 3.53453 3.60750 4.28200 4.48425 4.54232 4.56339 4.71522 4.90140 4.99543 5.09665 5.24040 5.24415 5.33010 5.41752 5.45155 5.51157 5.65350 5.68494 5.71240 5.77295 5.84866 5.95969 6.06026 6.15136 6.17052 6.32222 6.35002 6.43339 6.47569 6.60469 6.64371 6.69724 6.82171 6.93805 7.72461 8.02684 8.35725 8.41586 8.95161 9.72684 10.12000 11.23662 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034637 B = 0.003461 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.184308 B = 8088.820846 C = 8475.718469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.005 4.005 3 C -0.225 4.225 4 C 0.542 3.458 5 O -0.542 6.542 6 N -0.721 5.721 7 C 0.151 3.849 8 C -0.140 4.140 9 C 0.124 3.876 10 N -0.608 5.608 11 C -0.261 4.261 12 H 0.085 0.915 13 C 0.024 3.976 14 N -0.915 5.915 15 Si 0.893 3.107 16 H -0.288 1.288 17 H -0.304 1.304 18 H -0.268 1.268 19 C 0.152 3.848 20 C -0.141 4.141 21 C -0.133 4.133 22 C -0.172 4.172 23 C -0.167 4.167 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.396 0.604 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 -23.930 -5.180 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.007 4.007 3 C -0.246 4.246 4 C 0.331 3.669 5 O -0.422 6.422 6 N -0.371 5.371 7 C 0.047 3.953 8 C -0.180 4.180 9 C -0.002 4.002 10 N -0.332 5.332 11 C -0.390 4.390 12 H 0.102 0.898 13 C -0.175 4.175 14 N -0.558 5.558 15 Si 0.724 3.276 16 H -0.215 1.215 17 H -0.233 1.233 18 H -0.193 1.193 19 C 0.026 3.974 20 C -0.180 4.180 21 C -0.151 4.151 22 C -0.209 4.209 23 C -0.204 4.204 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.112 0.888 27 H 0.142 0.858 28 H 0.230 0.770 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.024 -23.749 -5.254 24.837 hybrid contribution -0.294 -0.327 0.182 0.476 sum 4.730 -24.076 -5.072 25.055 Atomic orbital electron populations 1.21191 0.90778 1.02602 1.03637 1.21758 0.96172 0.92252 0.90479 1.22331 1.00245 0.92077 1.09976 1.18495 0.87011 0.84220 0.77127 1.90753 1.15023 1.87607 1.48832 1.46166 1.12652 1.05962 1.72292 1.20960 0.94599 0.81512 0.98185 1.22384 1.00245 0.98576 0.96800 1.21404 0.92502 0.88083 0.98179 1.44363 1.50949 1.12835 1.25079 1.18913 0.97021 0.93917 1.29101 0.89770 1.25393 0.97830 0.95768 0.98519 1.69754 1.31438 1.24039 1.30579 0.86850 0.85160 0.76863 0.78702 1.21545 1.23290 1.19345 1.20868 0.94242 0.93686 0.88621 1.22327 0.98474 0.96598 1.00641 1.21282 1.00139 0.88847 1.04811 1.23066 1.00542 0.97623 0.99682 1.22988 1.03716 1.01987 0.91734 0.90293 0.92808 0.88772 0.85798 0.77008 0.89987 0.91775 0.92428 0.90860 0.95315 0.92728 0.95723 0.91354 0.92172 0.91450 0.86673 0.87975 0.88314 0.88248 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 7.89 36.01 0.28 -1.13 16 2 C 0.00 -0.05 5.81 -101.17 -0.59 -0.64 16 3 C -0.23 -2.49 9.67 -37.81 -0.37 -2.86 16 4 C 0.54 7.78 7.58 -12.66 -0.10 7.69 16 5 O -0.54 -9.53 12.94 5.26 0.07 -9.47 16 6 N -0.72 -9.76 5.07 -54.93 -0.28 -10.04 16 7 C 0.15 2.49 2.41 -67.87 -0.16 2.33 16 8 C -0.14 -2.65 5.66 -26.59 -0.15 -2.80 16 9 C 0.12 2.81 4.14 -3.71 -0.02 2.80 16 10 N -0.61 -14.57 2.74 -172.32 -0.47 -15.04 16 11 C -0.26 -7.34 10.06 -15.06 -0.15 -7.49 16 12 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 13 C 0.02 0.70 5.35 -17.44 -0.09 0.60 16 14 N -0.91 -28.37 13.97 55.49 0.78 -27.59 16 15 Si 0.89 23.11 24.25 -169.99 -4.12 18.99 16 16 H -0.29 -7.23 6.57 56.52 0.37 -6.85 16 17 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 18 H -0.27 -6.83 6.34 56.52 0.36 -6.48 16 19 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 20 C -0.14 -2.22 5.55 -26.61 -0.15 -2.36 16 21 C -0.13 -1.04 6.01 -91.78 -0.55 -1.59 16 22 C -0.17 -1.14 9.77 -26.73 -0.26 -1.40 16 23 C -0.17 -1.12 10.09 -26.73 -0.27 -1.39 16 24 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 25 H 0.05 0.49 6.39 -51.93 -0.33 0.16 16 26 H 0.09 1.30 6.03 -51.93 -0.31 0.99 16 27 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 28 H 0.40 4.23 8.59 -40.82 -0.35 3.88 16 29 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.81 4.49 -51.93 -0.23 1.57 16 33 H 0.03 0.66 6.78 -51.93 -0.35 0.31 16 34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 37 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.69 6.46 -51.93 -0.34 0.35 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -32.44 335.51 -8.57 -41.01 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.00 Total: 2.38 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.59 Total: -5.29 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.02 Total: -52.68 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.12 Total: 18.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.44 -8.57 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226325783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.739 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds