Wall clock time and date at job start Tue Mar 31 2020 00:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32991 * 119.99586 * 2 1 4 4 C 1.47105 * 120.00485 * 352.35878 * 3 2 1 5 5 O 1.21617 * 119.99315 * 354.45230 * 4 3 2 6 6 N 1.34776 * 120.00426 * 174.44971 * 4 3 2 7 7 C 1.46498 * 119.99843 * 179.97438 * 6 4 3 8 8 C 1.53076 * 109.45097 * 84.79222 * 7 6 4 9 9 C 1.53194 * 109.29684 * 181.23988 * 8 7 6 10 10 N 1.46920 * 108.89227 * 305.57904 * 9 8 7 11 11 C 1.36940 * 120.63050 * 233.51275 * 10 9 8 12 12 H 1.08004 * 119.99713 * 147.61712 * 11 10 9 13 13 C 1.38806 * 120.00092 * 327.62419 * 11 10 9 14 14 N 1.31611 * 120.00463 * 168.01521 * 13 11 10 15 15 Si 1.86801 * 119.99765 * 348.01316 * 13 11 10 16 16 H 1.48492 * 109.47456 * 88.99576 * 15 13 11 17 17 H 1.48500 * 109.47101 * 208.99496 * 15 13 11 18 18 H 1.48505 * 109.47293 * 328.99218 * 15 13 11 19 19 C 1.46932 * 118.74290 * 53.53318 * 10 9 8 20 20 C 1.53037 * 109.46074 * 204.99746 * 7 6 4 21 21 C 1.50693 * 120.00255 * 179.97438 * 2 1 3 22 22 C 1.53002 * 117.49866 * 8.62652 * 21 2 1 23 23 C 1.52997 * 117.50180 * 300.00256 * 21 2 1 24 24 H 1.09004 * 109.47265 * 86.17187 * 1 2 3 25 25 H 1.09005 * 109.46974 * 206.17001 * 1 2 3 26 26 H 1.08996 * 109.47278 * 326.16357 * 1 2 3 27 27 H 1.08007 * 120.00124 * 172.36548 * 3 2 1 28 28 H 0.97003 * 119.99737 * 359.97438 * 6 4 3 29 29 H 1.08996 * 109.46491 * 324.97400 * 7 6 4 30 30 H 1.09000 * 109.39306 * 61.36213 * 8 7 6 31 31 H 1.09000 * 109.62042 * 301.25954 * 8 7 6 32 32 H 1.08997 * 109.58926 * 185.71750 * 9 8 7 33 33 H 1.08998 * 109.58064 * 65.43340 * 9 8 7 34 34 H 0.96999 * 120.00946 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.57957 * 66.17908 * 19 10 9 36 36 H 1.08996 * 109.59260 * 186.46174 * 19 10 9 37 37 H 1.09007 * 109.49700 * 58.66575 * 20 7 6 38 38 H 1.08999 * 109.50272 * 298.57540 * 20 7 6 39 39 H 1.09002 * 115.54982 * 154.33108 * 21 2 1 40 40 H 1.09000 * 117.50068 * 359.97438 * 22 21 2 41 41 H 1.09003 * 117.50053 * 145.01910 * 22 21 2 42 42 H 1.09003 * 117.50132 * 214.97739 * 23 21 2 43 43 H 1.08996 * 117.50019 * 359.97201 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4462 2.4201 -0.1694 5 8 0.2541 2.4110 -0.4100 6 7 2.1023 3.5921 -0.0579 7 6 1.3795 4.8551 -0.2271 8 6 0.7319 5.2538 1.1013 9 6 -0.0484 6.5586 0.9127 10 7 0.8514 7.5736 0.3482 11 6 0.9970 8.7922 0.9557 12 1 1.9444 9.3088 0.9096 13 6 -0.0728 9.3634 1.6309 14 7 0.1214 10.4074 2.4085 15 14 -1.7883 8.6504 1.4359 16 1 -2.0035 7.5923 2.4553 17 1 -2.7954 9.7263 1.6191 18 1 -1.9301 8.0658 0.0781 19 6 1.5917 7.2567 -0.8808 20 6 2.3565 5.9460 -0.6714 21 6 2.2605 -1.3050 0.0006 22 6 1.4518 -2.5878 -0.2024 23 6 2.0262 -2.2556 1.1762 24 1 -0.3634 0.0686 -1.0254 25 1 -0.3633 -0.9224 0.4533 26 1 -0.3633 0.8536 0.5722 27 1 3.2448 1.1560 0.1243 28 1 3.0530 3.5993 0.1345 29 1 0.6047 4.7316 -0.9837 30 1 1.5078 5.3994 1.8529 31 1 0.0518 4.4670 1.4277 32 1 -0.4267 6.9007 1.8759 33 1 -0.8824 6.3901 0.2314 34 1 -0.6263 10.8068 2.8800 35 1 0.8926 7.1434 -1.7094 36 1 2.2936 8.0605 -1.1022 37 1 2.8326 5.6494 -1.6061 38 1 3.1175 6.0875 0.0960 39 1 3.2632 -1.2691 -0.4254 40 1 0.3746 -2.4879 -0.3359 41 1 1.9223 -3.3962 -0.7622 42 1 2.8745 -2.8455 1.5235 43 1 1.3273 -1.9370 1.9496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226325783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:48 Heat of formation + Delta-G solvation = 3.792124 kcal Electronic energy + Delta-G solvation = -21712.139249 eV Core-core repulsion = 18565.092530 eV Total energy + Delta-G solvation = -3147.046719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.11858 -39.48980 -38.62155 -36.10605 -34.13180 -34.03036 -32.00603 -31.87755 -28.78378 -26.88391 -25.06678 -24.44802 -23.42041 -23.19138 -21.50318 -21.19533 -19.48231 -18.81456 -17.93398 -17.58727 -16.98474 -16.30824 -16.09087 -15.96541 -15.55262 -15.40203 -14.90447 -14.73979 -14.48725 -14.17326 -14.07403 -13.87118 -13.64409 -13.44492 -12.88052 -12.72090 -12.60518 -12.45454 -12.23762 -12.19763 -12.00170 -11.83870 -11.73608 -11.51065 -11.43345 -11.32408 -10.81693 -10.53310 -10.12130 -9.70219 -8.90787 -8.18446 -5.58467 0.35722 1.27038 1.37390 1.45978 2.25849 2.30894 2.37885 3.02216 3.07892 3.28255 3.58466 3.79282 3.88658 3.93568 3.97242 4.12897 4.18126 4.22427 4.29386 4.32947 4.45217 4.65711 4.66525 4.69082 4.75452 4.81971 4.85176 4.92899 5.00108 5.01100 5.06794 5.12254 5.13965 5.15776 5.25988 5.40587 5.52194 5.57926 5.60704 5.88473 6.12450 6.68988 6.89373 7.35357 7.57820 8.01154 9.01236 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034637 B = 0.003461 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.184308 B = 8088.820846 C = 8475.718469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.001 3.999 3 C -0.234 4.234 4 C 0.536 3.464 5 O -0.581 6.581 6 N -0.710 5.710 7 C 0.161 3.839 8 C -0.129 4.129 9 C 0.122 3.878 10 N -0.621 5.621 11 C -0.246 4.246 12 H 0.058 0.942 13 C -0.032 4.032 14 N -0.960 5.960 15 Si 0.949 3.051 16 H -0.279 1.279 17 H -0.310 1.310 18 H -0.262 1.262 19 C 0.144 3.856 20 C -0.125 4.125 21 C -0.142 4.142 22 C -0.170 4.170 23 C -0.162 4.162 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.155 0.845 28 H 0.414 0.586 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.132 0.868 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 -27.046 -6.109 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.001 4.001 3 C -0.255 4.255 4 C 0.327 3.673 5 O -0.464 6.464 6 N -0.361 5.361 7 C 0.055 3.945 8 C -0.169 4.169 9 C -0.004 4.004 10 N -0.346 5.346 11 C -0.375 4.375 12 H 0.076 0.924 13 C -0.227 4.227 14 N -0.606 5.606 15 Si 0.779 3.221 16 H -0.206 1.206 17 H -0.238 1.238 18 H -0.187 1.187 19 C 0.019 3.981 20 C -0.164 4.164 21 C -0.160 4.160 22 C -0.206 4.206 23 C -0.199 4.199 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.172 0.828 28 H 0.250 0.750 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.116 0.884 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.385 -26.914 -6.207 28.349 hybrid contribution -0.669 0.577 0.441 0.988 sum 5.716 -26.337 -5.765 27.559 Atomic orbital electron populations 1.21102 0.91964 1.02311 1.02685 1.21990 0.95660 0.93590 0.88878 1.22361 1.01501 0.90362 1.11269 1.19090 0.86708 0.85287 0.76207 1.90748 1.16863 1.88169 1.50573 1.45927 1.13343 1.04715 1.72071 1.20643 0.94665 0.83083 0.96062 1.22222 0.99858 0.96415 0.98427 1.21352 0.92838 0.89398 0.96788 1.44496 1.51635 1.11839 1.26640 1.18889 0.95757 0.94974 1.27917 0.92406 1.25994 1.01194 0.96537 0.99001 1.69876 1.32265 1.26083 1.32407 0.85925 0.81000 0.76136 0.79016 1.20600 1.23845 1.18701 1.21099 0.94323 0.95793 0.86887 1.22145 0.97670 0.94011 1.02585 1.21336 1.00742 0.87730 1.06212 1.23166 1.00353 0.97272 0.99849 1.23070 1.04116 1.01300 0.91419 0.91263 0.90886 0.91603 0.82752 0.74975 0.91578 0.91820 0.92551 0.93170 0.95535 0.92903 0.94966 0.91309 0.88622 0.91032 0.85067 0.88437 0.86653 0.86529 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 7.89 71.24 0.56 -2.14 16 2 C 0.00 0.01 5.81 -17.62 -0.10 -0.09 16 3 C -0.23 -4.59 9.67 23.43 0.23 -4.36 16 4 C 0.54 14.50 7.58 86.57 0.66 15.16 16 5 O -0.58 -20.21 12.94 -4.09 -0.05 -20.26 16 6 N -0.71 -17.45 5.07 -445.96 -2.26 -19.72 16 7 C 0.16 4.98 2.41 45.03 0.11 5.09 16 8 C -0.13 -4.75 5.66 30.68 0.17 -4.58 16 9 C 0.12 5.46 4.14 86.36 0.36 5.82 16 10 N -0.62 -29.50 2.74 -699.10 -1.92 -31.42 16 11 C -0.25 -14.01 10.06 84.03 0.85 -13.17 16 12 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 13 C -0.03 -1.94 5.35 84.86 0.45 -1.48 16 14 N -0.96 -61.13 13.97 21.65 0.30 -60.83 16 15 Si 0.95 48.60 24.25 68.60 1.66 50.26 16 16 H -0.28 -13.72 6.57 99.48 0.65 -13.07 16 17 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 18 H -0.26 -12.99 6.34 99.48 0.63 -12.36 16 19 C 0.14 5.40 6.52 86.36 0.56 5.96 16 20 C -0.12 -3.58 5.55 30.67 0.17 -3.41 16 21 C -0.14 -1.78 6.01 -11.54 -0.07 -1.85 16 22 C -0.17 -1.74 9.77 30.60 0.30 -1.44 16 23 C -0.16 -1.67 10.09 30.59 0.31 -1.36 16 24 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 25 H 0.07 1.24 6.39 -2.38 -0.02 1.23 16 26 H 0.07 1.84 6.03 -2.39 -0.01 1.82 16 27 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 28 H 0.41 7.41 8.59 -92.71 -0.80 6.61 16 29 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 2.47 4.49 -2.39 -0.01 2.46 16 33 H 0.03 1.21 6.78 -2.39 -0.02 1.19 16 34 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 37 H 0.10 2.14 8.14 -2.38 -0.02 2.13 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 1.09 6.46 -2.39 -0.02 1.08 16 41 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -71.81 335.51 2.36 -69.45 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.07 Total: 14.37 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 4.55 Total: -1.86 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.88 Total: -111.96 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.05 Total: -20.26 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.66 Total: 50.26 kcal Total: -71.81 2.36 -69.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226325783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.247 kcal (2) G-P(sol) polarization free energy of solvation -71.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds