Wall clock time and date at job start Mon Mar 30 2020 23:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47118 * 120.00058 * 2 1 4 4 C 1.50699 * 120.00162 * 354.61418 * 3 2 1 5 5 C 1.32869 * 119.99911 * 174.61542 * 3 2 1 6 6 C 1.50701 * 120.00400 * 5.96916 * 5 3 2 7 7 C 1.50691 * 109.47257 * 126.18505 * 6 5 3 8 8 O 1.21278 * 120.00471 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99735 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99752 * 180.02562 * 9 7 6 11 11 C 1.53047 * 109.45738 * 275.02633 * 10 9 7 12 12 C 1.53196 * 109.31271 * 178.60550 * 11 10 9 13 13 N 1.46930 * 108.76428 * 54.65243 * 12 11 10 14 14 C 1.36936 * 120.62527 * 126.36572 * 13 12 11 15 15 H 1.08003 * 119.99579 * 203.74952 * 14 13 12 16 16 C 1.38814 * 120.00394 * 23.75243 * 14 13 12 17 17 N 1.31615 * 120.00278 * 27.89521 * 16 14 13 18 18 Si 1.86802 * 119.99886 * 207.90159 * 16 14 13 19 19 H 1.48503 * 109.46997 * 94.98835 * 18 16 14 20 20 H 1.48492 * 109.47074 * 214.98956 * 18 16 14 21 21 H 1.48504 * 109.47138 * 334.99211 * 18 16 14 22 22 C 1.46925 * 118.74046 * 306.38227 * 13 12 11 23 23 C 1.53039 * 109.46152 * 154.97663 * 10 9 7 24 24 H 1.07999 * 119.99798 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00223 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.00257 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47297 * 270.00563 * 4 3 2 28 28 H 1.09004 * 109.47010 * 29.99987 * 4 3 2 29 29 H 1.08997 * 109.47231 * 150.00289 * 4 3 2 30 30 H 1.08001 * 120.00009 * 186.24347 * 5 3 2 31 31 H 1.08995 * 109.47092 * 246.19037 * 6 5 3 32 32 H 1.08998 * 109.46575 * 6.18402 * 6 5 3 33 33 H 0.96995 * 119.99984 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.46519 * 34.99803 * 10 9 7 35 35 H 1.09005 * 109.49664 * 298.56679 * 11 10 9 36 36 H 1.08998 * 109.49960 * 58.66224 * 11 10 9 37 37 H 1.08999 * 109.59611 * 294.86319 * 12 11 10 38 38 H 1.08993 * 109.70220 * 174.50445 * 12 11 10 39 39 H 0.96992 * 120.00632 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.58846 * 293.82715 * 22 13 12 41 41 H 1.08990 * 109.70340 * 173.46680 * 22 13 12 42 42 H 1.09005 * 109.49016 * 301.33117 * 23 10 9 43 43 H 1.08992 * 109.50220 * 61.39098 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3158 2.5763 -0.1225 5 6 3.3886 1.2766 0.1080 6 6 4.1482 -0.0249 0.0950 7 6 5.2156 0.0270 -0.9675 8 8 5.3470 1.0229 -1.6470 9 7 6.0243 -1.0335 -1.1626 10 6 7.0623 -0.9828 -2.1951 11 6 6.4589 -1.3795 -3.5445 12 6 7.5386 -1.2918 -4.6277 13 7 8.6878 -2.1099 -4.2169 14 6 9.1893 -3.0757 -5.0482 15 1 9.7453 -3.9057 -4.6379 16 6 8.9832 -2.9878 -6.4181 17 7 8.8253 -1.8109 -6.9858 18 14 8.9297 -4.5400 -7.4560 19 1 7.5193 -4.9714 -7.6291 20 1 9.5306 -4.2670 -8.7862 21 1 9.6966 -5.6157 -6.7778 22 6 9.2884 -1.8725 -2.8972 23 6 8.1889 -1.9534 -1.8335 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8687 -0.9353 0.0004 27 1 1.2188 2.8420 -1.1752 28 1 0.3245 2.4684 0.3178 29 1 1.8627 3.3603 0.4012 30 1 3.9203 2.2111 0.2095 31 1 4.6119 -0.1847 1.0684 32 1 3.4617 -0.8440 -0.1192 33 1 5.9194 -1.8299 -0.6189 34 1 7.4616 0.0293 -2.2594 35 1 6.0818 -2.4007 -3.4883 36 1 5.6411 -0.7022 -3.7906 37 1 7.8525 -0.2549 -4.7479 38 1 7.1429 -1.6655 -5.5721 39 1 8.6808 -1.7495 -7.9429 40 1 9.7449 -0.8830 -2.8762 41 1 10.0468 -2.6292 -2.6971 42 1 8.6026 -1.6845 -0.8615 43 1 7.7953 -2.9690 -1.7930 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228701922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:11 Heat of formation + Delta-G solvation = -10.101147 kcal Electronic energy + Delta-G solvation = -21467.406606 eV Core-core repulsion = 18319.757429 eV Total energy + Delta-G solvation = -3147.649177 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99836 -39.08956 -37.76915 -35.98249 -33.98306 -32.94527 -31.81102 -31.39499 -30.52173 -27.26764 -26.09554 -23.96286 -23.69135 -22.67299 -21.44402 -20.91257 -18.88488 -18.46468 -17.92242 -17.27883 -16.77373 -16.67636 -15.88044 -15.60654 -15.44857 -15.39369 -14.86515 -14.60101 -14.33073 -14.20402 -14.09451 -13.45004 -13.28742 -13.20924 -13.14109 -12.90388 -12.61469 -12.60295 -12.43388 -12.15061 -12.05127 -11.86429 -11.53217 -11.51737 -11.41168 -11.30815 -10.81532 -10.54452 -9.98432 -9.11012 -8.82296 -7.92704 -5.27668 0.45735 1.46397 1.49139 1.58308 1.70617 2.04361 2.41303 2.51497 3.20625 3.62535 3.74545 3.83373 3.95207 4.02021 4.05513 4.22567 4.32506 4.44486 4.46900 4.60669 4.63525 4.69710 4.76392 4.78023 4.80143 4.87446 4.94380 5.04392 5.06698 5.11644 5.16471 5.28485 5.40085 5.50613 5.56889 5.60322 5.61002 5.67604 5.83090 6.05472 6.32456 6.66553 7.08901 7.36434 7.82732 8.35008 9.15250 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026250 B = 0.003312 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.425451 B = 8450.877477 C = 8847.923760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.147 4.147 3 C -0.113 4.113 4 C -0.119 4.119 5 C -0.141 4.141 6 C -0.106 4.106 7 C 0.508 3.492 8 O -0.590 6.590 9 N -0.712 5.712 10 C 0.161 3.839 11 C -0.129 4.129 12 C 0.181 3.819 13 N -0.608 5.608 14 C -0.266 4.266 15 H 0.076 0.924 16 C -0.051 4.051 17 N -0.931 5.931 18 Si 0.961 3.039 19 H -0.288 1.288 20 H -0.299 1.299 21 H -0.263 1.263 22 C 0.140 3.860 23 C -0.120 4.120 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.416 0.584 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.043 0.957 37 H -0.012 1.012 38 H 0.050 0.950 39 H 0.250 0.750 40 H 0.010 0.990 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 0.882 19.473 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.113 4.113 4 C -0.175 4.175 5 C -0.159 4.159 6 C -0.145 4.145 7 C 0.296 3.704 8 O -0.470 6.470 9 N -0.363 5.363 10 C 0.056 3.944 11 C -0.169 4.169 12 C 0.054 3.946 13 N -0.332 5.332 14 C -0.395 4.395 15 H 0.093 0.907 16 C -0.247 4.247 17 N -0.577 5.577 18 Si 0.789 3.211 19 H -0.215 1.215 20 H -0.226 1.226 21 H -0.187 1.187 22 C 0.014 3.986 23 C -0.160 4.160 24 H 0.125 0.875 25 H 0.134 0.866 26 H 0.145 0.855 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.253 0.747 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.006 0.994 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.208 1.608 18.859 23.667 hybrid contribution 0.230 -0.514 -1.128 1.260 sum -13.977 1.094 17.732 22.605 Atomic orbital electron populations 1.24681 0.95472 1.03123 0.97802 1.22125 0.95979 0.96249 1.02138 1.20820 0.94119 0.95502 1.00824 1.20849 1.00727 0.93839 1.02124 1.22817 0.94180 0.97879 1.01040 1.20851 0.96030 0.98734 0.98854 1.21315 0.82324 0.82213 0.84517 1.90701 1.71935 1.34057 1.50288 1.46053 1.34259 1.18302 1.37725 1.20622 0.88025 0.99160 0.86642 1.22273 0.97963 1.00519 0.96156 1.20446 0.86714 0.91854 0.95549 1.44428 1.32359 1.41068 1.15326 1.19550 1.32109 0.99974 0.87915 0.90679 1.25690 1.02360 0.98778 0.97902 1.70321 1.53458 1.23886 1.09986 0.85350 0.77649 0.80401 0.77728 1.21482 1.22576 1.18700 1.21046 0.94511 0.98175 0.84841 1.22123 0.95319 0.99253 0.99281 0.87512 0.86598 0.85470 0.91827 0.90215 0.91354 0.87696 0.84989 0.86068 0.74657 0.92801 0.91785 0.93835 0.99367 0.93193 0.94149 0.97216 0.91316 0.88924 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 14.14 66.64 0.94 -1.36 16 2 C -0.15 -2.37 9.31 23.43 0.22 -2.15 16 3 C -0.11 -2.16 5.98 -18.71 -0.11 -2.27 16 4 C -0.12 -1.96 9.61 71.24 0.68 -1.28 16 5 C -0.14 -2.98 8.43 24.51 0.21 -2.78 16 6 C -0.11 -1.87 5.94 29.10 0.17 -1.70 16 7 C 0.51 13.98 7.79 87.65 0.68 14.67 16 8 O -0.59 -22.75 15.70 -3.02 -0.05 -22.79 16 9 N -0.71 -17.72 5.08 -442.41 -2.25 -19.97 16 10 C 0.16 5.40 2.42 45.02 0.11 5.51 16 11 C -0.13 -5.21 5.65 30.68 0.17 -5.04 16 12 C 0.18 9.23 5.43 86.36 0.47 9.70 16 13 N -0.61 -30.76 3.00 -699.11 -2.10 -32.86 16 14 C -0.27 -14.62 9.55 84.03 0.80 -13.81 16 15 H 0.08 3.95 7.95 -2.91 -0.02 3.93 16 16 C -0.05 -2.91 4.64 84.86 0.39 -2.52 16 17 N -0.93 -56.88 11.63 21.65 0.25 -56.63 16 18 Si 0.96 45.05 29.64 68.60 2.03 47.08 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.14 5.62 6.51 86.36 0.56 6.19 16 23 C -0.12 -3.63 5.55 30.67 0.17 -3.46 16 24 H 0.11 1.26 6.06 -2.91 -0.02 1.24 16 25 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 26 H 0.13 1.70 5.83 -2.91 -0.02 1.69 16 27 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.08 1.01 6.25 -2.39 -0.01 1.00 16 29 H 0.07 1.06 8.06 -2.39 -0.02 1.04 16 30 H 0.10 2.47 8.04 -2.91 -0.02 2.45 16 31 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.12 1.66 5.33 -2.39 -0.01 1.65 16 33 H 0.42 6.93 8.60 -92.71 -0.80 6.14 16 34 H 0.05 2.14 7.58 -2.39 -0.02 2.13 16 35 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.05 2.86 6.08 -2.39 -0.01 2.84 16 39 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.07 2.60 7.92 -2.39 -0.02 2.58 16 42 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -73.32 346.51 3.56 -69.76 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.19 Total: 15.71 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.48 Total: -0.30 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.10 Total: -109.46 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -73.32 3.56 -69.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228701922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.660 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds