Wall clock time and date at job start Tue Mar 31 2020 00:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32995 * 119.99854 * 2 1 4 4 C 1.47098 * 120.00190 * 172.63532 * 3 2 1 5 5 O 1.21613 * 119.99620 * 2.64278 * 4 3 2 6 6 N 1.34771 * 120.00141 * 182.64782 * 4 3 2 7 7 C 1.46498 * 120.00268 * 359.97438 * 6 4 3 8 8 C 1.46507 * 120.00179 * 179.97438 * 6 4 3 9 9 C 1.52998 * 109.46936 * 94.53983 * 8 6 4 10 10 H 1.09006 * 112.96181 * 64.76920 * 9 8 6 11 11 C 1.53942 * 113.77528 * 293.09024 * 9 8 6 12 12 C 1.53949 * 86.29012 * 222.09224 * 11 9 8 13 13 N 1.47577 * 113.77039 * 196.44247 * 9 8 6 14 14 C 1.36940 * 134.49446 * 318.94066 * 13 9 8 15 15 H 1.08000 * 119.99591 * 5.85707 * 14 13 9 16 16 C 1.38815 * 120.00271 * 185.85810 * 14 13 9 17 17 N 1.31618 * 119.99746 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47015 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47206 * 119.99578 * 18 16 14 21 21 H 1.48500 * 109.46825 * 240.00068 * 18 16 14 22 22 C 1.50687 * 120.00004 * 179.97438 * 2 1 3 23 23 C 1.53003 * 117.50038 * 356.06844 * 22 2 1 24 24 C 1.53004 * 60.00034 * 252.50638 * 23 22 2 25 25 H 1.08998 * 109.47632 * 270.00339 * 1 2 3 26 26 H 1.09007 * 109.47335 * 29.99898 * 1 2 3 27 27 H 1.09001 * 109.47261 * 150.00114 * 1 2 3 28 28 H 1.08006 * 120.00217 * 352.63141 * 3 2 1 29 29 H 1.09002 * 109.47155 * 87.77079 * 7 6 4 30 30 H 1.08997 * 109.47351 * 207.77661 * 7 6 4 31 31 H 1.09004 * 109.46970 * 327.77431 * 7 6 4 32 32 H 1.08992 * 109.47274 * 214.54876 * 8 6 4 33 33 H 1.09006 * 109.46917 * 334.54927 * 8 6 4 34 34 H 1.08999 * 113.73717 * 336.43777 * 11 9 8 35 35 H 1.09000 * 113.74321 * 107.63495 * 11 9 8 36 36 H 1.09000 * 113.76570 * 137.90500 * 12 11 9 37 37 H 1.09001 * 113.76768 * 269.18838 * 12 11 9 38 38 H 0.97001 * 119.99569 * 180.02562 * 17 16 14 39 39 H 1.09006 * 115.54921 * 141.77227 * 22 2 1 40 40 H 1.08995 * 117.50060 * 359.97438 * 23 22 2 41 41 H 1.09007 * 117.49902 * 145.02284 * 23 22 2 42 42 H 1.09004 * 117.49858 * 252.51296 * 24 23 22 43 43 H 1.08996 * 117.52223 * 107.47427 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6338 1.1571 0.1633 5 8 4.2398 0.1063 0.2501 6 7 4.3017 2.3265 0.2168 7 6 3.5718 3.5924 0.1119 8 6 5.7576 2.3319 0.3800 9 6 6.4244 2.4218 -0.9940 10 1 6.2153 3.3603 -1.5076 11 6 6.2112 1.1741 -1.8702 12 6 7.6942 1.3160 -2.2581 13 7 7.8534 2.0533 -0.9870 14 6 8.9031 2.2965 -0.1419 15 1 8.7339 2.8009 0.7980 16 6 10.1846 1.8946 -0.4931 17 7 10.3906 1.2794 -1.6383 18 14 11.6165 2.2270 0.6595 19 1 11.1233 2.9275 1.8724 20 1 12.2452 0.9402 1.0517 21 1 12.6193 3.0782 -0.0298 22 6 2.2604 -1.3050 0.0006 23 6 1.4411 -2.5938 0.0942 24 6 2.2614 -2.1197 1.2957 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6386 2.0833 -0.1200 29 1 3.2420 3.9049 1.1027 30 1 4.2259 4.3550 -0.3107 31 1 2.7043 3.4591 -0.5346 32 1 6.0524 3.1900 0.9839 33 1 6.0709 1.4134 0.8764 34 1 5.9909 0.2709 -1.3013 35 1 5.5217 1.3328 -2.6994 36 1 8.2329 0.3689 -2.2884 37 1 7.8598 1.9280 -3.1448 38 1 11.2860 0.9982 -1.8835 39 1 3.1646 -1.3261 -0.6080 40 1 0.3572 -2.4977 0.1558 41 1 1.8061 -3.4631 -0.4528 42 1 3.1660 -2.6771 1.5389 43 1 1.7174 -1.7115 2.1474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230947439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:36 Heat of formation + Delta-G solvation = 70.556390 kcal Electronic energy + Delta-G solvation = -22149.170743 eV Core-core repulsion = 19005.019140 eV Total energy + Delta-G solvation = -3144.151603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.89845 -38.11272 -37.21732 -35.01723 -33.43742 -32.06747 -29.17781 -27.73085 -27.61095 -26.18159 -23.59782 -23.15938 -22.36466 -22.04868 -19.76821 -18.86621 -18.07343 -17.04209 -16.51072 -16.06340 -15.35473 -15.16767 -14.57526 -14.31262 -13.99729 -13.70002 -13.36653 -13.28949 -12.86963 -12.80103 -12.51889 -12.41330 -12.14830 -11.79626 -11.56531 -11.32264 -11.26300 -10.96336 -10.81523 -10.70779 -10.61392 -10.34761 -10.30496 -9.78512 -9.61150 -9.40730 -9.13322 -8.91082 -8.70921 -8.15590 -6.76051 -5.68333 -2.99503 1.37597 3.32918 3.43834 3.48970 3.51465 3.53050 3.97851 4.50558 4.53682 4.66522 4.94927 5.04371 5.07303 5.15644 5.26814 5.30925 5.37376 5.43916 5.48782 5.56678 5.56972 5.68958 5.70828 5.74739 5.87953 5.98400 6.07718 6.13069 6.20029 6.31435 6.32193 6.48543 6.56647 6.66672 6.86253 6.87732 6.93078 7.37363 7.59380 7.69401 7.77839 8.07419 8.58488 9.13189 9.80009 10.72202 11.49666 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.004123 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.872401 B = 6788.856700 C = 7184.058900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.011 4.011 3 C -0.223 4.223 4 C 0.542 3.458 5 O -0.526 6.526 6 N -0.609 5.609 7 C 0.081 3.919 8 C 0.117 3.883 9 C 0.129 3.871 10 H 0.039 0.961 11 C -0.157 4.157 12 C 0.164 3.836 13 N -0.601 5.601 14 C -0.220 4.220 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.113 4.113 23 C -0.193 4.193 24 C -0.155 4.155 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.252 0.748 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.014 -0.394 2.826 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.013 4.013 3 C -0.243 4.243 4 C 0.333 3.667 5 O -0.405 6.405 6 N -0.342 5.342 7 C -0.063 4.063 8 C -0.006 4.006 9 C 0.021 3.979 10 H 0.056 0.944 11 C -0.195 4.195 12 C 0.039 3.961 13 N -0.327 5.327 14 C -0.348 4.348 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.567 5.567 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.219 1.219 22 C -0.131 4.131 23 C -0.230 4.230 24 C -0.192 4.192 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.155 0.845 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.320 -0.933 2.985 21.549 hybrid contribution 0.915 0.670 0.485 1.233 sum -20.406 -0.263 3.470 20.700 Atomic orbital electron populations 1.21001 0.91400 1.03251 1.02631 1.21796 0.94979 0.93534 0.91022 1.22516 0.93974 0.98338 1.09507 1.18456 0.87620 0.83516 0.77102 1.90751 1.69738 1.30445 1.49532 1.47705 1.07993 1.05726 1.72767 1.21762 0.97179 0.86305 1.01059 1.21766 0.76920 1.03225 0.98677 1.22497 0.86500 0.95573 0.93329 0.94409 1.23804 0.98321 0.98882 0.98486 1.22138 0.89656 0.96198 0.88100 1.46015 1.03175 1.60240 1.23285 1.19034 0.85330 1.32791 0.97647 0.90394 1.24789 0.97047 1.01438 0.97178 1.69855 1.20542 1.44324 1.21974 0.86098 0.82781 0.77466 0.79752 1.20507 1.21765 1.21850 1.21472 1.00748 0.87960 1.02879 1.23141 0.98158 0.98525 1.03137 1.22777 1.02055 1.02882 0.91490 0.90576 0.91139 0.90828 0.85615 0.93083 0.90966 0.91409 0.91726 0.89022 0.89536 0.94097 0.91748 0.95724 0.93810 0.84523 0.88921 0.88763 0.88520 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.44 36.01 0.34 -0.61 16 2 C -0.01 -0.13 5.80 -101.17 -0.59 -0.71 16 3 C -0.22 -2.67 8.83 -37.81 -0.33 -3.01 16 4 C 0.54 8.61 7.19 -12.67 -0.09 8.51 16 5 O -0.53 -10.04 11.13 5.27 0.06 -9.98 16 6 N -0.61 -9.30 2.81 -182.98 -0.52 -9.82 16 7 C 0.08 0.87 10.13 59.85 0.61 1.47 16 8 C 0.12 2.22 5.37 -4.04 -0.02 2.20 16 9 C 0.13 2.77 4.56 -66.87 -0.31 2.46 16 10 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.16 -3.36 7.24 -25.79 -0.19 -3.55 16 12 C 0.16 4.18 7.39 -2.85 -0.02 4.16 16 13 N -0.60 -16.03 3.58 -169.73 -0.61 -16.64 16 14 C -0.22 -6.33 10.51 -15.06 -0.16 -6.49 16 15 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 17 N -0.92 -28.31 11.56 55.49 0.64 -27.67 16 18 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 C -0.11 -1.43 4.24 -91.77 -0.39 -1.82 16 23 C -0.19 -1.94 9.77 -26.73 -0.26 -2.20 16 24 C -0.15 -1.82 10.23 -26.73 -0.27 -2.09 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.44 8.06 -51.92 -0.42 0.02 16 27 H 0.07 0.50 6.48 -51.93 -0.34 0.16 16 28 H 0.13 1.15 6.22 -52.48 -0.33 0.83 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.07 0.59 6.19 -51.93 -0.32 0.27 16 32 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 33 H 0.09 2.01 7.29 -51.93 -0.38 1.63 16 34 H 0.09 1.97 6.58 -51.93 -0.34 1.63 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.79 7.45 -51.93 -0.39 1.41 16 37 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.14 2.15 6.36 -51.93 -0.33 1.82 16 40 H 0.09 0.76 6.38 -51.93 -0.33 0.43 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -33.37 344.61 -8.97 -42.34 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.94 Total: 0.85 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.78 Total: -2.00 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.48 Total: -54.13 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.06 Total: -9.98 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.37 -8.97 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230947439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.892 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds