Wall clock time and date at job start Tue Mar 31 2020 00:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32995 * 119.99854 * 2 1 4 4 C 1.47098 * 120.00190 * 172.63532 * 3 2 1 5 5 O 1.21613 * 119.99620 * 2.64278 * 4 3 2 6 6 N 1.34771 * 120.00141 * 182.64782 * 4 3 2 7 7 C 1.46498 * 120.00268 * 359.97438 * 6 4 3 8 8 C 1.46507 * 120.00179 * 179.97438 * 6 4 3 9 9 C 1.52998 * 109.46936 * 94.53983 * 8 6 4 10 10 H 1.09006 * 112.96181 * 64.76920 * 9 8 6 11 11 C 1.53942 * 113.77528 * 293.09024 * 9 8 6 12 12 C 1.53949 * 86.29012 * 222.09224 * 11 9 8 13 13 N 1.47577 * 113.77039 * 196.44247 * 9 8 6 14 14 C 1.36940 * 134.49446 * 318.94066 * 13 9 8 15 15 H 1.08000 * 119.99591 * 5.85707 * 14 13 9 16 16 C 1.38815 * 120.00271 * 185.85810 * 14 13 9 17 17 N 1.31618 * 119.99746 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47015 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47206 * 119.99578 * 18 16 14 21 21 H 1.48500 * 109.46825 * 240.00068 * 18 16 14 22 22 C 1.50687 * 120.00004 * 179.97438 * 2 1 3 23 23 C 1.53003 * 117.50038 * 356.06844 * 22 2 1 24 24 C 1.53004 * 60.00034 * 252.50638 * 23 22 2 25 25 H 1.08998 * 109.47632 * 270.00339 * 1 2 3 26 26 H 1.09007 * 109.47335 * 29.99898 * 1 2 3 27 27 H 1.09001 * 109.47261 * 150.00114 * 1 2 3 28 28 H 1.08006 * 120.00217 * 352.63141 * 3 2 1 29 29 H 1.09002 * 109.47155 * 87.77079 * 7 6 4 30 30 H 1.08997 * 109.47351 * 207.77661 * 7 6 4 31 31 H 1.09004 * 109.46970 * 327.77431 * 7 6 4 32 32 H 1.08992 * 109.47274 * 214.54876 * 8 6 4 33 33 H 1.09006 * 109.46917 * 334.54927 * 8 6 4 34 34 H 1.08999 * 113.73717 * 336.43777 * 11 9 8 35 35 H 1.09000 * 113.74321 * 107.63495 * 11 9 8 36 36 H 1.09000 * 113.76570 * 137.90500 * 12 11 9 37 37 H 1.09001 * 113.76768 * 269.18838 * 12 11 9 38 38 H 0.97001 * 119.99569 * 180.02562 * 17 16 14 39 39 H 1.09006 * 115.54921 * 141.77227 * 22 2 1 40 40 H 1.08995 * 117.50060 * 359.97438 * 23 22 2 41 41 H 1.09007 * 117.49902 * 145.02284 * 23 22 2 42 42 H 1.09004 * 117.49858 * 252.51296 * 24 23 22 43 43 H 1.08996 * 117.52223 * 107.47427 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6338 1.1571 0.1633 5 8 4.2398 0.1063 0.2501 6 7 4.3017 2.3265 0.2168 7 6 3.5718 3.5924 0.1119 8 6 5.7576 2.3319 0.3800 9 6 6.4244 2.4218 -0.9940 10 1 6.2153 3.3603 -1.5076 11 6 6.2112 1.1741 -1.8702 12 6 7.6942 1.3160 -2.2581 13 7 7.8534 2.0533 -0.9870 14 6 8.9031 2.2965 -0.1419 15 1 8.7339 2.8009 0.7980 16 6 10.1846 1.8946 -0.4931 17 7 10.3906 1.2794 -1.6383 18 14 11.6165 2.2270 0.6595 19 1 11.1233 2.9275 1.8724 20 1 12.2452 0.9402 1.0517 21 1 12.6193 3.0782 -0.0298 22 6 2.2604 -1.3050 0.0006 23 6 1.4411 -2.5938 0.0942 24 6 2.2614 -2.1197 1.2957 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6386 2.0833 -0.1200 29 1 3.2420 3.9049 1.1027 30 1 4.2259 4.3550 -0.3107 31 1 2.7043 3.4591 -0.5346 32 1 6.0524 3.1900 0.9839 33 1 6.0709 1.4134 0.8764 34 1 5.9909 0.2709 -1.3013 35 1 5.5217 1.3328 -2.6994 36 1 8.2329 0.3689 -2.2884 37 1 7.8598 1.9280 -3.1448 38 1 11.2860 0.9982 -1.8835 39 1 3.1646 -1.3261 -0.6080 40 1 0.3572 -2.4977 0.1558 41 1 1.8061 -3.4631 -0.4528 42 1 3.1660 -2.6771 1.5389 43 1 1.7174 -1.7115 2.1474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230947439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:34 Heat of formation + Delta-G solvation = 50.704567 kcal Electronic energy + Delta-G solvation = -22150.031583 eV Core-core repulsion = 19005.019140 eV Total energy + Delta-G solvation = -3145.012443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.12600 -39.62164 -38.47677 -36.28811 -34.38454 -34.14349 -30.46574 -29.85625 -28.53482 -27.24636 -25.32912 -24.76781 -23.56170 -23.12890 -21.10731 -20.62189 -19.07236 -18.66103 -18.02916 -17.25226 -16.92993 -16.51272 -16.05414 -15.81748 -15.48361 -15.12426 -14.41265 -14.34501 -13.98633 -13.91677 -13.73639 -13.69419 -13.37523 -13.12893 -12.98233 -12.88769 -12.57386 -12.47656 -12.43544 -12.24235 -12.08528 -11.83755 -11.62515 -11.57205 -11.28881 -11.17850 -10.87604 -10.29843 -9.87340 -9.44441 -8.87988 -7.90709 -5.23575 0.45243 1.42957 1.45204 1.55013 2.12187 2.41828 2.49955 3.08264 3.30228 3.41988 3.66370 3.79045 3.91987 4.08142 4.14606 4.24035 4.30303 4.33972 4.37070 4.47832 4.51023 4.68633 4.72011 4.75184 4.83516 4.86297 4.90228 4.97995 4.99615 5.00873 5.08109 5.15137 5.21775 5.27380 5.33443 5.49418 5.50334 5.61627 5.68650 5.79426 5.93182 6.63291 6.90715 7.41276 7.60964 8.58421 9.27993 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.004123 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.872401 B = 6788.856700 C = 7184.058900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.000 4.000 3 C -0.235 4.235 4 C 0.530 3.470 5 O -0.572 6.572 6 N -0.610 5.610 7 C 0.074 3.926 8 C 0.133 3.867 9 C 0.137 3.863 10 H 0.057 0.943 11 C -0.130 4.130 12 C 0.160 3.840 13 N -0.629 5.629 14 C -0.228 4.228 15 H 0.086 0.914 16 C -0.072 4.072 17 N -0.958 5.958 18 Si 0.979 3.021 19 H -0.262 1.262 20 H -0.295 1.295 21 H -0.291 1.291 22 C -0.137 4.137 23 C -0.165 4.165 24 C -0.166 4.166 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.021 0.979 38 H 0.247 0.753 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.341 1.130 3.615 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.002 4.002 3 C -0.256 4.256 4 C 0.323 3.677 5 O -0.453 6.453 6 N -0.342 5.342 7 C -0.067 4.067 8 C 0.008 3.992 9 C 0.030 3.970 10 H 0.074 0.926 11 C -0.168 4.168 12 C 0.034 3.966 13 N -0.356 5.356 14 C -0.356 4.356 15 H 0.104 0.896 16 C -0.264 4.264 17 N -0.607 5.607 18 Si 0.807 3.193 19 H -0.186 1.186 20 H -0.222 1.222 21 H -0.217 1.217 22 C -0.155 4.155 23 C -0.202 4.202 24 C -0.203 4.203 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.179 0.821 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.039 0.961 38 H 0.056 0.944 39 H 0.115 0.885 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.710 0.635 3.785 25.006 hybrid contribution 1.888 0.131 0.223 1.905 sum -22.822 0.766 4.009 23.184 Atomic orbital electron populations 1.21086 0.88005 1.04790 1.04005 1.22153 0.97088 0.92178 0.88800 1.22565 0.91359 1.00281 1.11371 1.19259 0.89391 0.82867 0.76170 1.90753 1.70986 1.32091 1.51494 1.47769 1.06332 1.07574 1.72576 1.22066 0.97642 0.84011 1.03029 1.21268 0.79612 1.01647 0.96638 1.22639 0.83639 0.95829 0.94903 0.92572 1.23487 0.95961 0.98432 0.98910 1.22063 0.91973 0.94489 0.88047 1.46352 1.05007 1.60904 1.23318 1.19459 0.86161 1.31709 0.98277 0.89586 1.25683 0.99851 1.01900 0.99004 1.70051 1.20643 1.45973 1.24028 0.85003 0.79085 0.76973 0.78263 1.18598 1.22232 1.21749 1.21365 1.00693 0.90442 1.03021 1.23233 0.99327 0.96850 1.00799 1.22784 1.02144 1.03193 0.92174 0.88996 0.89110 0.89835 0.82085 0.91091 0.90700 0.88646 0.90638 0.92899 0.91319 0.91252 0.95342 0.96148 0.94416 0.88525 0.85991 0.88685 0.90507 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.44 71.24 0.67 -0.62 16 2 C 0.00 -0.01 5.80 -17.62 -0.10 -0.11 16 3 C -0.24 -5.05 8.83 23.43 0.21 -4.85 16 4 C 0.53 16.53 7.19 86.57 0.62 17.15 16 5 O -0.57 -22.78 11.13 -4.07 -0.05 -22.82 16 6 N -0.61 -17.80 2.81 -851.07 -2.40 -20.20 16 7 C 0.07 1.34 10.13 127.77 1.29 2.64 16 8 C 0.13 5.03 5.37 86.38 0.46 5.49 16 9 C 0.14 5.84 4.56 45.09 0.21 6.04 16 10 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 11 C -0.13 -5.66 7.24 31.25 0.23 -5.43 16 12 C 0.16 8.46 7.39 86.44 0.64 9.10 16 13 N -0.63 -34.37 3.58 -690.91 -2.47 -36.85 16 14 C -0.23 -13.33 10.51 84.03 0.88 -12.45 16 15 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 16 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 17 N -0.96 -61.15 11.56 21.65 0.25 -60.90 16 18 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 22 C -0.14 -3.44 4.24 -11.54 -0.05 -3.49 16 23 C -0.17 -3.05 9.77 30.60 0.30 -2.75 16 24 C -0.17 -3.87 10.23 30.60 0.31 -3.56 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 0.65 8.06 -2.38 -0.02 0.63 16 27 H 0.08 0.74 6.48 -2.39 -0.02 0.73 16 28 H 0.16 2.20 6.22 -2.91 -0.02 2.18 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 31 H 0.10 1.22 6.19 -2.39 -0.01 1.20 16 32 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 33 H 0.05 2.41 7.29 -2.38 -0.02 2.39 16 34 H 0.07 3.28 6.58 -2.39 -0.02 3.26 16 35 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.03 1.68 7.45 -2.39 -0.02 1.66 16 37 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.10 3.25 6.36 -2.38 -0.02 3.23 16 40 H 0.12 1.54 6.38 -2.39 -0.02 1.52 16 41 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -77.00 344.61 4.49 -72.51 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.98 Total: 15.18 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 6.14 Total: 3.33 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -4.62 Total: -117.94 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -77.00 4.49 -72.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230947439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.212 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds