Wall clock time and date at job start Tue Mar 31 2020 00:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32999 * 119.99947 * 2 1 4 4 C 1.47102 * 119.99845 * 172.83035 * 3 2 1 5 5 O 1.21616 * 120.00290 * 358.03446 * 4 3 2 6 6 N 1.34771 * 119.99985 * 178.03947 * 4 3 2 7 7 C 1.46500 * 120.00102 * 5.38468 * 6 4 3 8 8 C 1.46504 * 120.00454 * 185.38390 * 6 4 3 9 9 C 1.53000 * 109.46877 * 99.12918 * 8 6 4 10 10 H 1.09002 * 112.96117 * 48.84096 * 9 8 6 11 11 C 1.53949 * 113.76969 * 180.51129 * 9 8 6 12 12 C 1.53949 * 86.28819 * 137.91318 * 11 9 8 13 13 N 1.47574 * 113.77508 * 277.01200 * 9 8 6 14 14 C 1.36939 * 134.49249 * 41.05832 * 13 9 8 15 15 H 1.07999 * 120.00099 * 238.01826 * 14 13 9 16 16 C 1.38814 * 120.00012 * 58.01500 * 14 13 9 17 17 N 1.31613 * 119.99807 * 186.48566 * 16 14 13 18 18 Si 1.86801 * 119.99858 * 6.47942 * 16 14 13 19 19 H 1.48499 * 109.47022 * 92.78544 * 18 16 14 20 20 H 1.48499 * 109.46938 * 212.78202 * 18 16 14 21 21 H 1.48501 * 109.47108 * 332.78237 * 18 16 14 22 22 C 1.50703 * 120.00425 * 180.02562 * 2 1 3 23 23 C 1.53002 * 117.49486 * 359.69280 * 22 2 1 24 24 C 1.53002 * 117.49571 * 291.03509 * 22 2 1 25 25 H 1.08996 * 109.46984 * 89.99836 * 1 2 3 26 26 H 1.09000 * 109.46866 * 209.99482 * 1 2 3 27 27 H 1.09002 * 109.46903 * 329.99740 * 1 2 3 28 28 H 1.07994 * 119.99869 * 353.10626 * 3 2 1 29 29 H 1.08995 * 109.47474 * 89.99804 * 7 6 4 30 30 H 1.08997 * 109.47498 * 210.00191 * 7 6 4 31 31 H 1.09005 * 109.46945 * 330.00333 * 7 6 4 32 32 H 1.08988 * 109.47431 * 219.13329 * 8 6 4 33 33 H 1.09001 * 109.46676 * 339.13630 * 8 6 4 34 34 H 1.08991 * 113.74555 * 252.25812 * 11 9 8 35 35 H 1.08998 * 113.73838 * 23.46489 * 11 9 8 36 36 H 1.08998 * 113.76757 * 90.69826 * 12 11 9 37 37 H 1.08998 * 113.77247 * 221.98374 * 12 11 9 38 38 H 0.97005 * 119.99912 * 180.02562 * 17 16 14 39 39 H 1.08992 * 115.55306 * 145.36124 * 22 2 1 40 40 H 1.09006 * 117.49725 * 0.02562 * 23 22 2 41 41 H 1.09002 * 117.49916 * 145.02116 * 23 22 2 42 42 H 1.08996 * 117.49450 * 214.97143 * 24 22 2 43 43 H 1.09000 * 117.50109 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6344 1.1568 0.1590 5 8 4.2314 0.1106 0.3263 6 7 4.3125 2.3207 0.1194 7 6 3.5853 3.5898 0.0367 8 6 5.7770 2.3171 0.1592 9 6 6.3261 2.4736 -1.2603 10 1 5.8618 3.2939 -1.8077 11 6 7.8638 2.4699 -1.3347 12 6 7.7017 1.5758 -2.5774 13 7 6.3864 1.2086 -2.0178 14 6 5.5555 0.1279 -2.1488 15 1 5.9108 -0.8601 -1.8961 16 6 4.2566 0.3025 -2.6064 17 7 3.4189 -0.7125 -2.6118 18 14 3.6979 1.9781 -3.2143 19 1 3.8994 2.0643 -4.6830 20 1 2.2583 2.1637 -2.9005 21 1 4.4916 3.0384 -2.5426 22 6 2.2606 -1.3051 -0.0006 23 6 1.4385 -2.5955 0.0061 24 6 2.1920 -2.1610 1.2658 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6378 2.0837 -0.1123 29 1 3.3772 3.9556 1.0421 30 1 4.1910 4.3215 -0.4980 31 1 2.6465 3.4365 -0.4957 32 1 6.1258 3.1444 0.7770 33 1 6.1266 1.3752 0.5821 34 1 8.2951 3.4473 -1.5506 35 1 8.3427 1.9708 -0.4924 36 1 7.6414 2.1311 -3.5134 37 1 8.4100 0.7484 -2.6187 38 1 2.5113 -0.5906 -2.9319 39 1 3.1963 -1.3074 -0.5595 40 1 0.3526 -2.5004 0.0105 41 1 1.8337 -3.4468 -0.5481 42 1 3.0825 -2.7267 1.5397 43 1 1.6021 -1.7799 2.0995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230947449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:40 Heat of formation + Delta-G solvation = 91.373653 kcal Electronic energy + Delta-G solvation = -23977.319234 eV Core-core repulsion = 20834.070335 eV Total energy + Delta-G solvation = -3143.248899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.29666 -37.89562 -36.74817 -34.42131 -32.69057 -32.14485 -28.96717 -28.18332 -27.08329 -25.78445 -23.22367 -22.78723 -21.80497 -21.54940 -19.30959 -19.12781 -17.34297 -16.55546 -16.28412 -15.58487 -15.15921 -14.88419 -14.38447 -13.93583 -13.47877 -13.30118 -12.99745 -12.77831 -12.63356 -12.34124 -12.16306 -12.09641 -11.84726 -11.65591 -11.60777 -11.29993 -10.80544 -10.77569 -10.66063 -10.53284 -10.12724 -10.01011 -9.87143 -9.65178 -9.44949 -9.37090 -8.49337 -8.06828 -8.04100 -7.63392 -6.26110 -5.80566 -3.47050 2.18983 3.38197 3.48337 3.51709 3.87071 4.39240 4.63293 4.79684 4.96834 5.25140 5.34672 5.38048 5.49697 5.58067 5.64193 5.73802 5.79783 5.81881 5.88142 5.93078 5.96071 6.01352 6.08172 6.15301 6.20422 6.25818 6.29433 6.37249 6.41103 6.53071 6.56148 6.68815 6.81032 6.81630 7.09588 7.17500 7.22166 7.50329 7.91744 8.14379 8.39293 8.48485 8.97387 9.41164 9.81083 10.67198 11.31064 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.008214 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.554548 B = 3407.790308 C = 3543.792559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.002 4.002 3 C -0.229 4.229 4 C 0.552 3.448 5 O -0.480 6.480 6 N -0.621 5.621 7 C 0.084 3.916 8 C 0.127 3.873 9 C 0.103 3.897 10 H 0.057 0.943 11 C -0.148 4.148 12 C 0.102 3.898 13 N -0.604 5.604 14 C -0.220 4.220 15 H 0.070 0.930 16 C 0.061 3.939 17 N -0.882 5.882 18 Si 0.853 3.147 19 H -0.300 1.300 20 H -0.297 1.297 21 H -0.243 1.243 22 C -0.098 4.098 23 C -0.194 4.194 24 C -0.175 4.175 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.029 0.971 37 H 0.046 0.954 38 H 0.259 0.741 39 H 0.191 0.809 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 6.569 6.461 9.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.004 4.004 3 C -0.250 4.250 4 C 0.342 3.658 5 O -0.354 6.354 6 N -0.356 5.356 7 C -0.060 4.060 8 C 0.004 3.996 9 C -0.003 4.003 10 H 0.074 0.926 11 C -0.187 4.187 12 C -0.022 4.022 13 N -0.333 5.333 14 C -0.349 4.349 15 H 0.088 0.912 16 C -0.141 4.141 17 N -0.522 5.522 18 Si 0.684 3.316 19 H -0.228 1.228 20 H -0.224 1.224 21 H -0.169 1.169 22 C -0.115 4.115 23 C -0.231 4.231 24 C -0.212 4.212 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.208 0.792 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.752 5.717 6.512 9.092 hybrid contribution -0.820 1.288 -0.767 1.709 sum -3.572 7.005 5.745 9.738 Atomic orbital electron populations 1.20975 0.92784 1.02082 1.02394 1.21714 0.94004 0.94443 0.90222 1.22321 0.94474 0.97610 1.10588 1.18059 0.87162 0.83149 0.77424 1.90741 1.69581 1.29689 1.45352 1.47492 1.06408 1.05612 1.76123 1.21661 0.97232 0.86863 1.00291 1.21553 0.79179 1.02134 0.96750 1.23278 0.92389 0.92095 0.92575 0.92637 1.23565 0.96814 0.98636 0.99637 1.22747 0.90607 0.95171 0.93716 1.46065 1.20839 1.16689 1.49685 1.18232 0.92043 0.86057 1.38571 0.91219 1.25842 0.97388 0.95597 0.95314 1.69624 1.05370 1.30033 1.47166 0.87332 0.77324 0.88180 0.78783 1.22776 1.22406 1.16854 1.22273 1.03216 0.85819 1.00174 1.22962 0.97540 1.00758 1.01801 1.22737 1.02096 1.04935 0.91436 0.90942 0.91281 0.92001 0.87313 0.93636 0.91959 0.92005 0.92700 0.88961 0.93147 0.90571 0.95311 0.93605 0.93038 0.79221 0.90133 0.89204 0.89352 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.54 36.00 0.34 -1.58 16 2 C 0.00 -0.04 5.80 -101.16 -0.59 -0.63 16 3 C -0.23 -4.68 8.19 -37.80 -0.31 -4.99 16 4 C 0.55 12.37 4.43 -12.67 -0.06 12.31 16 5 O -0.48 -12.28 10.56 5.26 0.06 -12.22 16 6 N -0.62 -12.36 1.96 -182.98 -0.36 -12.71 16 7 C 0.08 1.33 9.07 59.85 0.54 1.87 16 8 C 0.13 2.47 5.42 -4.04 -0.02 2.45 16 9 C 0.10 2.11 3.02 -66.87 -0.20 1.91 16 10 H 0.06 1.20 5.60 -51.93 -0.29 0.91 16 11 C -0.15 -2.58 7.86 -25.80 -0.20 -2.79 16 12 C 0.10 2.10 8.93 -2.97 -0.03 2.07 16 13 N -0.60 -14.74 2.58 -170.74 -0.44 -15.18 16 14 C -0.22 -6.23 8.94 -15.06 -0.13 -6.37 16 15 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 16 C 0.06 1.70 3.49 -17.43 -0.06 1.64 16 17 N -0.88 -25.11 11.11 55.49 0.62 -24.49 16 18 Si 0.85 21.73 24.27 -169.99 -4.13 17.61 16 19 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 20 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 21 H -0.24 -5.74 3.66 56.52 0.21 -5.53 16 22 C -0.10 -2.10 3.72 -91.77 -0.34 -2.44 16 23 C -0.19 -3.55 9.81 -26.69 -0.26 -3.82 16 24 C -0.17 -3.25 10.24 -26.69 -0.27 -3.53 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 0.96 6.29 -51.93 -0.33 0.63 16 27 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 28 H 0.11 1.96 6.14 -52.49 -0.32 1.64 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 31 H 0.06 1.00 5.76 -51.93 -0.30 0.70 16 32 H 0.05 0.87 8.13 -51.94 -0.42 0.45 16 33 H 0.09 2.03 7.12 -51.93 -0.37 1.66 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.19 5.02 3.95 -51.93 -0.20 4.81 16 40 H 0.08 1.29 6.26 -51.93 -0.33 0.97 16 41 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 42 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -31.02 321.63 -7.94 -38.96 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.95 Total: 7.08 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -1.59 Total: -3.89 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.18 Total: -52.39 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.06 Total: -12.22 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.13 Total: 17.61 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.02 -7.94 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230947449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.336 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds