Wall clock time and date at job start Tue Mar 31 2020 00:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32999 * 119.99947 * 2 1 4 4 C 1.47102 * 119.99845 * 172.83035 * 3 2 1 5 5 O 1.21616 * 120.00290 * 358.03446 * 4 3 2 6 6 N 1.34771 * 119.99985 * 178.03947 * 4 3 2 7 7 C 1.46500 * 120.00102 * 5.38468 * 6 4 3 8 8 C 1.46504 * 120.00454 * 185.38390 * 6 4 3 9 9 C 1.53000 * 109.46877 * 99.12918 * 8 6 4 10 10 H 1.09002 * 112.96117 * 48.84096 * 9 8 6 11 11 C 1.53949 * 113.76969 * 180.51129 * 9 8 6 12 12 C 1.53949 * 86.28819 * 137.91318 * 11 9 8 13 13 N 1.47574 * 113.77508 * 277.01200 * 9 8 6 14 14 C 1.36939 * 134.49249 * 41.05832 * 13 9 8 15 15 H 1.07999 * 120.00099 * 238.01826 * 14 13 9 16 16 C 1.38814 * 120.00012 * 58.01500 * 14 13 9 17 17 N 1.31613 * 119.99807 * 186.48566 * 16 14 13 18 18 Si 1.86801 * 119.99858 * 6.47942 * 16 14 13 19 19 H 1.48499 * 109.47022 * 92.78544 * 18 16 14 20 20 H 1.48499 * 109.46938 * 212.78202 * 18 16 14 21 21 H 1.48501 * 109.47108 * 332.78237 * 18 16 14 22 22 C 1.50703 * 120.00425 * 180.02562 * 2 1 3 23 23 C 1.53002 * 117.49486 * 359.69280 * 22 2 1 24 24 C 1.53002 * 117.49571 * 291.03509 * 22 2 1 25 25 H 1.08996 * 109.46984 * 89.99836 * 1 2 3 26 26 H 1.09000 * 109.46866 * 209.99482 * 1 2 3 27 27 H 1.09002 * 109.46903 * 329.99740 * 1 2 3 28 28 H 1.07994 * 119.99869 * 353.10626 * 3 2 1 29 29 H 1.08995 * 109.47474 * 89.99804 * 7 6 4 30 30 H 1.08997 * 109.47498 * 210.00191 * 7 6 4 31 31 H 1.09005 * 109.46945 * 330.00333 * 7 6 4 32 32 H 1.08988 * 109.47431 * 219.13329 * 8 6 4 33 33 H 1.09001 * 109.46676 * 339.13630 * 8 6 4 34 34 H 1.08991 * 113.74555 * 252.25812 * 11 9 8 35 35 H 1.08998 * 113.73838 * 23.46489 * 11 9 8 36 36 H 1.08998 * 113.76757 * 90.69826 * 12 11 9 37 37 H 1.08998 * 113.77247 * 221.98374 * 12 11 9 38 38 H 0.97005 * 119.99912 * 180.02562 * 17 16 14 39 39 H 1.08992 * 115.55306 * 145.36124 * 22 2 1 40 40 H 1.09006 * 117.49725 * 0.02562 * 23 22 2 41 41 H 1.09002 * 117.49916 * 145.02116 * 23 22 2 42 42 H 1.08996 * 117.49450 * 214.97143 * 24 22 2 43 43 H 1.09000 * 117.50109 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6344 1.1568 0.1590 5 8 4.2314 0.1106 0.3263 6 7 4.3125 2.3207 0.1194 7 6 3.5853 3.5898 0.0367 8 6 5.7770 2.3171 0.1592 9 6 6.3261 2.4736 -1.2603 10 1 5.8618 3.2939 -1.8077 11 6 7.8638 2.4699 -1.3347 12 6 7.7017 1.5758 -2.5774 13 7 6.3864 1.2086 -2.0178 14 6 5.5555 0.1279 -2.1488 15 1 5.9108 -0.8601 -1.8961 16 6 4.2566 0.3025 -2.6064 17 7 3.4189 -0.7125 -2.6118 18 14 3.6979 1.9781 -3.2143 19 1 3.8994 2.0643 -4.6830 20 1 2.2583 2.1637 -2.9005 21 1 4.4916 3.0384 -2.5426 22 6 2.2606 -1.3051 -0.0006 23 6 1.4385 -2.5955 0.0061 24 6 2.1920 -2.1610 1.2658 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6378 2.0837 -0.1123 29 1 3.3772 3.9556 1.0421 30 1 4.1910 4.3215 -0.4980 31 1 2.6465 3.4365 -0.4957 32 1 6.1258 3.1444 0.7770 33 1 6.1266 1.3752 0.5821 34 1 8.2951 3.4473 -1.5506 35 1 8.3427 1.9708 -0.4924 36 1 7.6414 2.1311 -3.5134 37 1 8.4100 0.7484 -2.6187 38 1 2.5113 -0.5906 -2.9319 39 1 3.1963 -1.3074 -0.5595 40 1 0.3526 -2.5004 0.0105 41 1 1.8337 -3.4468 -0.5481 42 1 3.0825 -2.7267 1.5397 43 1 1.6021 -1.7799 2.0995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230947449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:39 Heat of formation + Delta-G solvation = 72.493796 kcal Electronic energy + Delta-G solvation = -23978.137926 eV Core-core repulsion = 20834.070335 eV Total energy + Delta-G solvation = -3144.067591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88663 -39.52369 -38.29376 -36.00594 -34.27259 -34.10329 -30.55866 -29.96332 -28.44655 -27.18120 -24.83725 -24.61820 -23.35142 -23.04390 -21.05592 -20.67472 -18.89092 -18.37934 -17.89061 -17.26107 -16.90796 -16.42559 -15.94720 -15.52295 -15.23944 -15.01691 -14.55154 -14.25024 -14.09022 -13.96372 -13.75876 -13.56310 -13.44802 -13.07281 -13.04380 -12.97572 -12.54185 -12.38403 -12.26871 -12.05706 -11.79605 -11.70558 -11.47428 -11.39304 -11.21245 -10.98679 -10.42063 -9.84952 -9.60464 -9.14916 -8.20279 -7.89599 -5.59965 0.68040 1.33131 1.39025 1.49020 2.40490 2.54172 2.81542 3.23100 3.28472 3.35954 3.80423 3.93747 4.01012 4.21799 4.30680 4.33928 4.38770 4.47553 4.50691 4.53087 4.57136 4.69556 4.71952 4.79578 4.81294 4.82573 4.90415 4.93240 4.98857 5.04977 5.08833 5.10647 5.22687 5.33572 5.61339 5.66391 5.72968 6.02836 6.09577 6.31619 6.43727 6.77614 6.88016 7.65970 7.82938 8.64739 9.21809 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.008214 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.554548 B = 3407.790308 C = 3543.792559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.002 4.002 3 C -0.252 4.252 4 C 0.541 3.459 5 O -0.528 6.528 6 N -0.626 5.626 7 C 0.076 3.924 8 C 0.129 3.871 9 C 0.100 3.900 10 H 0.059 0.941 11 C -0.118 4.118 12 C 0.092 3.908 13 N -0.632 5.632 14 C -0.222 4.222 15 H 0.005 0.995 16 C 0.032 3.968 17 N -0.904 5.904 18 Si 0.899 3.101 19 H -0.321 1.321 20 H -0.292 1.292 21 H -0.212 1.212 22 C -0.130 4.130 23 C -0.178 4.178 24 C -0.164 4.164 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.134 0.866 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.255 0.745 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 9.899 7.408 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.003 4.003 3 C -0.272 4.272 4 C 0.333 3.667 5 O -0.405 6.405 6 N -0.361 5.361 7 C -0.067 4.067 8 C 0.006 3.994 9 C -0.005 4.005 10 H 0.077 0.923 11 C -0.157 4.157 12 C -0.032 4.032 13 N -0.362 5.362 14 C -0.352 4.352 15 H 0.023 0.977 16 C -0.169 4.169 17 N -0.545 5.545 18 Si 0.729 3.271 19 H -0.251 1.251 20 H -0.218 1.218 21 H -0.136 1.136 22 C -0.148 4.148 23 C -0.214 4.214 24 C -0.201 4.201 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.152 0.848 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.159 0.841 40 H 0.130 0.870 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.789 9.097 7.475 12.369 hybrid contribution -0.376 0.154 -1.045 1.122 sum -4.165 9.252 6.430 12.012 Atomic orbital electron populations 1.21037 0.89300 1.04282 1.03135 1.22084 0.96372 0.93233 0.88656 1.22520 0.93611 0.98994 1.12103 1.18534 0.88167 0.83229 0.76799 1.90737 1.70621 1.31512 1.47607 1.47665 1.06722 1.06491 1.75247 1.21934 0.96915 0.85166 1.02650 1.21520 0.79360 1.01991 0.96565 1.23408 0.94880 0.89698 0.92512 0.92346 1.23365 0.94581 0.99950 0.97783 1.22939 0.88552 0.95953 0.95726 1.46270 1.21540 1.17004 1.51338 1.17643 0.93138 0.85312 1.39065 0.97721 1.26156 0.96942 0.98314 0.95458 1.69808 1.05218 1.31624 1.47811 0.86624 0.77624 0.85991 0.76825 1.25081 1.21837 1.13557 1.21971 1.02757 0.88286 1.01747 1.23000 0.98929 0.98625 1.00874 1.22735 1.01918 1.03745 0.91702 0.90657 0.89646 0.89303 0.84827 0.90354 0.90267 0.92313 0.88199 0.92622 0.88845 0.89908 0.94325 0.94119 0.93564 0.84054 0.87012 0.90481 0.90772 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 9.54 71.24 0.68 -2.67 16 2 C 0.00 -0.07 5.80 -17.61 -0.10 -0.17 16 3 C -0.25 -10.01 8.19 23.43 0.19 -9.81 16 4 C 0.54 24.32 4.43 86.57 0.38 24.70 16 5 O -0.53 -28.34 10.56 -4.08 -0.04 -28.38 16 6 N -0.63 -23.83 1.96 -851.08 -1.66 -25.50 16 7 C 0.08 2.11 9.07 127.77 1.16 3.27 16 8 C 0.13 4.78 5.42 86.38 0.47 5.25 16 9 C 0.10 3.89 3.02 45.09 0.14 4.03 16 10 H 0.06 2.28 5.60 -2.39 -0.01 2.26 16 11 C -0.12 -3.75 7.86 31.26 0.25 -3.51 16 12 C 0.09 3.70 8.93 86.48 0.77 4.48 16 13 N -0.63 -31.12 2.58 -694.09 -1.79 -32.91 16 14 C -0.22 -13.23 8.94 84.03 0.75 -12.48 16 15 H 0.01 0.37 8.06 -2.91 -0.02 0.35 16 16 C 0.03 1.83 3.49 84.86 0.30 2.13 16 17 N -0.90 -54.00 11.11 21.65 0.24 -53.76 16 18 Si 0.90 44.74 24.27 68.60 1.66 46.41 16 19 H -0.32 -17.06 7.11 99.48 0.71 -16.36 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 21 H -0.21 -9.30 3.66 99.48 0.36 -8.94 16 22 C -0.13 -5.73 3.72 -11.54 -0.04 -5.77 16 23 C -0.18 -6.50 9.81 30.62 0.30 -6.20 16 24 C -0.16 -6.15 10.24 30.62 0.31 -5.84 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.08 2.06 6.29 -2.39 -0.02 2.04 16 27 H 0.09 1.98 8.07 -2.39 -0.02 1.96 16 28 H 0.13 4.48 6.14 -2.91 -0.02 4.46 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 1.94 7.92 -2.39 -0.02 1.92 16 31 H 0.06 1.68 5.76 -2.38 -0.01 1.67 16 32 H 0.10 2.77 8.13 -2.39 -0.02 2.75 16 33 H 0.06 2.49 7.12 -2.39 -0.02 2.47 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.08 2.54 8.10 -2.39 -0.02 2.53 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 39 H 0.14 7.96 3.95 -2.39 -0.01 7.95 16 40 H 0.11 3.34 6.26 -2.38 -0.01 3.33 16 41 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -74.24 321.63 4.61 -69.63 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.65 Total: 27.09 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 5.55 Total: -2.59 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -3.22 Total: -112.16 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.04 Total: -28.38 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.66 Total: 46.41 kcal Total: -74.24 4.61 -69.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230947449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.129 kcal (2) G-P(sol) polarization free energy of solvation -74.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds