Wall clock time and date at job start Tue Mar 31 2020 00:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32993 * 120.00115 * 2 1 4 4 C 1.47103 * 119.99656 * 353.98839 * 3 2 1 5 5 O 1.21616 * 120.00343 * 4.99961 * 4 3 2 6 6 N 1.34774 * 119.99648 * 185.00032 * 4 3 2 7 7 C 1.46494 * 120.00311 * 354.93871 * 6 4 3 8 8 C 1.46501 * 119.99993 * 174.93422 * 6 4 3 9 9 C 1.53000 * 109.47410 * 275.33411 * 8 6 4 10 10 H 1.09003 * 112.96049 * 67.04971 * 9 8 6 11 11 C 1.53946 * 113.77066 * 295.36671 * 9 8 6 12 12 C 1.53942 * 86.28902 * 222.09113 * 11 9 8 13 13 N 1.47579 * 113.76964 * 198.72010 * 9 8 6 14 14 C 1.36937 * 134.49538 * 318.93888 * 13 9 8 15 15 H 1.07996 * 119.99878 * 5.34346 * 14 13 9 16 16 C 1.38816 * 119.99772 * 185.34385 * 14 13 9 17 17 N 1.31618 * 120.00298 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99935 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47193 * 89.99270 * 18 16 14 20 20 H 1.48494 * 109.47145 * 209.99897 * 18 16 14 21 21 H 1.48504 * 109.46849 * 329.99648 * 18 16 14 22 22 C 1.50697 * 119.99914 * 180.02562 * 2 1 3 23 23 C 1.53001 * 117.49899 * 14.72195 * 22 2 1 24 24 C 1.52999 * 60.00071 * 252.50704 * 23 22 2 25 25 H 1.09005 * 109.46836 * 65.18431 * 1 2 3 26 26 H 1.09000 * 109.46783 * 185.18172 * 1 2 3 27 27 H 1.08993 * 109.47136 * 305.18149 * 1 2 3 28 28 H 1.07998 * 120.00146 * 173.98898 * 3 2 1 29 29 H 1.09001 * 109.47351 * 89.99663 * 7 6 4 30 30 H 1.09005 * 109.47328 * 330.00074 * 7 6 4 31 31 H 1.09001 * 109.47436 * 210.00010 * 7 6 4 32 32 H 1.09001 * 109.47051 * 35.33446 * 8 6 4 33 33 H 1.09006 * 109.47442 * 155.33035 * 8 6 4 34 34 H 1.08992 * 113.73966 * 336.43937 * 11 9 8 35 35 H 1.08996 * 113.73613 * 107.63861 * 11 9 8 36 36 H 1.09001 * 113.76657 * 137.91143 * 12 11 9 37 37 H 1.09003 * 113.77076 * 269.19376 * 12 11 9 38 38 H 0.96999 * 119.99915 * 180.02562 * 17 16 14 39 39 H 1.09001 * 115.55124 * 160.42974 * 22 2 1 40 40 H 1.08995 * 117.50054 * 0.02562 * 23 22 2 41 41 H 1.09007 * 117.49843 * 145.02261 * 23 22 2 42 42 H 1.08996 * 117.50439 * 252.50683 * 24 23 22 43 43 H 1.09005 * 117.49523 * 107.48454 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4426 2.4222 -0.1334 5 8 0.2265 2.4261 -0.1522 6 7 2.1218 3.5818 -0.2348 7 6 3.5806 3.5903 -0.1011 8 6 1.4014 4.8338 -0.4789 9 6 1.1655 5.0020 -1.9812 10 1 0.4781 4.2611 -2.3893 11 6 2.4601 5.1640 -2.7983 12 6 1.7115 6.2588 -3.5798 13 7 0.8537 6.3875 -2.3829 14 6 0.0812 7.3884 -1.8571 15 1 -0.3954 7.2550 -0.8972 16 6 -0.0892 8.5745 -2.5578 17 7 0.4920 8.7373 -3.7274 18 14 -1.1424 9.9403 -1.8402 19 1 -0.2942 10.8385 -1.0161 20 1 -1.7624 10.7185 -2.9425 21 1 -2.2080 9.3494 -0.9912 22 6 2.2605 -1.3051 -0.0006 23 6 1.4770 -2.5730 -0.3460 24 6 1.9213 -2.3172 1.0955 25 1 -0.3633 0.4313 -0.9328 26 1 -0.3633 -1.0235 0.0928 27 1 -0.3633 0.5921 0.8399 28 1 3.2476 1.1543 0.0979 29 1 4.0362 3.4488 -1.0812 30 1 3.8894 2.7829 0.5629 31 1 3.9019 4.5454 0.3145 32 1 0.4425 4.8081 0.0388 33 1 1.9922 5.6713 -0.1078 34 1 3.3024 5.5381 -2.2164 35 1 2.7128 4.2895 -3.3978 36 1 2.3156 7.1424 -3.7858 37 1 1.1853 5.8887 -4.4597 38 1 0.3732 9.5663 -4.2168 39 1 3.2981 -1.2488 -0.3300 40 1 0.4167 -2.4632 -0.5733 41 1 1.9990 -3.3512 -0.9030 42 1 2.7355 -2.9270 1.4870 43 1 1.1531 -2.0391 1.8170 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230947451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:45 Heat of formation + Delta-G solvation = 67.238283 kcal Electronic energy + Delta-G solvation = -21774.939315 eV Core-core repulsion = 18630.643828 eV Total energy + Delta-G solvation = -3144.295487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.90347 -38.33262 -37.57790 -35.12394 -33.23537 -32.08594 -29.02959 -27.81160 -27.56221 -26.08032 -24.11129 -23.26154 -22.68295 -22.12280 -19.60365 -18.93365 -18.11005 -17.12068 -16.56747 -16.20077 -15.45838 -15.20179 -14.82128 -14.50571 -14.07452 -13.71171 -13.22207 -13.17081 -13.07548 -12.54315 -12.50350 -12.22581 -12.15742 -11.93002 -11.70541 -11.34443 -11.31621 -11.15310 -10.99968 -10.75795 -10.71704 -10.69882 -10.39122 -9.81823 -9.69131 -9.47457 -9.26800 -9.00071 -8.73253 -8.17847 -6.79566 -5.70718 -3.01913 1.34142 3.25539 3.42363 3.43754 3.48710 3.50754 3.70784 4.28273 4.53273 4.55664 4.65391 4.76354 4.93801 5.03660 5.22513 5.28973 5.34173 5.48431 5.49805 5.55575 5.60156 5.64363 5.76775 5.79588 5.80278 5.88086 5.88793 6.05375 6.07289 6.25063 6.35665 6.44333 6.48844 6.51774 6.76147 6.79577 6.92844 7.32301 7.49315 7.64058 7.73512 8.04887 8.50309 9.11747 9.77953 10.69047 11.47229 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032644 B = 0.003479 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.544628 B = 8046.241928 C = 8305.977289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.009 4.009 3 C -0.224 4.224 4 C 0.542 3.458 5 O -0.540 6.540 6 N -0.606 5.606 7 C 0.081 3.919 8 C 0.120 3.880 9 C 0.130 3.870 10 H 0.045 0.955 11 C -0.158 4.158 12 C 0.165 3.835 13 N -0.603 5.603 14 C -0.220 4.220 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.131 4.131 23 C -0.173 4.173 24 C -0.168 4.168 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.026 0.974 38 H 0.253 0.747 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.219 -20.211 8.038 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.010 4.010 3 C -0.244 4.244 4 C 0.333 3.667 5 O -0.419 6.419 6 N -0.338 5.338 7 C -0.062 4.062 8 C -0.004 4.004 9 C 0.023 3.977 10 H 0.063 0.937 11 C -0.196 4.196 12 C 0.040 3.960 13 N -0.329 5.329 14 C -0.348 4.348 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.739 3.261 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.149 4.149 23 C -0.210 4.210 24 C -0.205 4.205 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.144 0.856 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.425 -19.838 8.026 22.652 hybrid contribution -0.428 0.880 0.165 0.993 sum 6.997 -18.958 8.191 21.805 Atomic orbital electron populations 1.21073 0.90739 1.00870 1.04692 1.21768 0.96173 0.92266 0.90832 1.22427 1.00208 0.92033 1.09773 1.18464 0.87204 0.84037 0.77021 1.90778 1.13661 1.86903 1.50576 1.47674 1.07300 1.07708 1.71146 1.21815 0.80241 1.02693 1.01458 1.21753 0.97230 0.83506 0.97873 1.22506 0.93836 0.88985 0.92420 0.93735 1.23747 0.97100 0.99110 0.99658 1.22133 0.89885 0.94575 0.89440 1.46115 1.54990 1.06825 1.24984 1.19033 1.22685 0.92092 1.00989 0.90330 1.24789 1.00799 0.98350 0.96537 1.69834 1.47325 1.25917 1.13843 0.86165 0.80085 0.82054 0.77765 1.21615 1.21708 1.20664 1.21274 0.99633 0.88455 1.05507 1.23087 1.01305 0.98179 0.98388 1.22978 1.03817 1.01604 0.92063 0.89704 0.93002 0.89839 0.85648 0.92545 0.91526 0.91035 0.90767 0.90055 0.91048 0.93461 0.91575 0.95592 0.93750 0.86756 0.87877 0.88314 0.88318 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.02 36.01 0.29 -1.15 16 2 C -0.01 -0.10 5.82 -101.17 -0.59 -0.69 16 3 C -0.22 -2.73 8.85 -37.81 -0.33 -3.07 16 4 C 0.54 8.71 7.54 -12.67 -0.10 8.61 16 5 O -0.54 -10.46 12.74 5.26 0.07 -10.40 16 6 N -0.61 -9.35 2.77 -182.98 -0.51 -9.86 16 7 C 0.08 0.90 9.69 59.84 0.58 1.48 16 8 C 0.12 2.27 5.36 -4.04 -0.02 2.25 16 9 C 0.13 2.84 4.54 -66.86 -0.30 2.54 16 10 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.16 -3.08 7.35 -25.79 -0.19 -3.26 16 12 C 0.16 4.03 7.40 -2.85 -0.02 4.01 16 13 N -0.60 -15.91 3.58 -169.71 -0.61 -16.52 16 14 C -0.22 -6.33 10.51 -15.06 -0.16 -6.48 16 15 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.92 -28.01 11.55 55.49 0.64 -27.37 16 18 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.13 -1.10 6.01 -91.77 -0.55 -1.66 16 23 C -0.17 -1.25 9.78 -26.73 -0.26 -1.51 16 24 C -0.17 -1.18 10.07 -26.73 -0.27 -1.45 16 25 H 0.08 1.21 7.33 -51.93 -0.38 0.83 16 26 H 0.05 0.50 5.73 -51.93 -0.30 0.20 16 27 H 0.08 1.15 7.13 -51.93 -0.37 0.78 16 28 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 29 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 30 H 0.07 0.58 6.26 -51.93 -0.33 0.25 16 31 H 0.07 0.75 7.86 -51.93 -0.41 0.35 16 32 H 0.07 1.55 7.52 -51.93 -0.39 1.16 16 33 H 0.08 1.53 7.83 -51.93 -0.41 1.12 16 34 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.74 7.43 -51.93 -0.39 1.35 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 0.77 6.26 -51.93 -0.32 0.44 16 41 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -33.32 346.90 -9.19 -42.51 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.96 Total: -0.55 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.02 Total: -0.72 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.47 Total: -53.75 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.32 -9.19 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230947451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.746 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds