Wall clock time and date at job start Tue Mar 31 2020 00:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32993 * 120.00115 * 2 1 4 4 C 1.47103 * 119.99656 * 353.98839 * 3 2 1 5 5 O 1.21616 * 120.00343 * 4.99961 * 4 3 2 6 6 N 1.34774 * 119.99648 * 185.00032 * 4 3 2 7 7 C 1.46494 * 120.00311 * 354.93871 * 6 4 3 8 8 C 1.46501 * 119.99993 * 174.93422 * 6 4 3 9 9 C 1.53000 * 109.47410 * 275.33411 * 8 6 4 10 10 H 1.09003 * 112.96049 * 67.04971 * 9 8 6 11 11 C 1.53946 * 113.77066 * 295.36671 * 9 8 6 12 12 C 1.53942 * 86.28902 * 222.09113 * 11 9 8 13 13 N 1.47579 * 113.76964 * 198.72010 * 9 8 6 14 14 C 1.36937 * 134.49538 * 318.93888 * 13 9 8 15 15 H 1.07996 * 119.99878 * 5.34346 * 14 13 9 16 16 C 1.38816 * 119.99772 * 185.34385 * 14 13 9 17 17 N 1.31618 * 120.00298 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99935 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47193 * 89.99270 * 18 16 14 20 20 H 1.48494 * 109.47145 * 209.99897 * 18 16 14 21 21 H 1.48504 * 109.46849 * 329.99648 * 18 16 14 22 22 C 1.50697 * 119.99914 * 180.02562 * 2 1 3 23 23 C 1.53001 * 117.49899 * 14.72195 * 22 2 1 24 24 C 1.52999 * 60.00071 * 252.50704 * 23 22 2 25 25 H 1.09005 * 109.46836 * 65.18431 * 1 2 3 26 26 H 1.09000 * 109.46783 * 185.18172 * 1 2 3 27 27 H 1.08993 * 109.47136 * 305.18149 * 1 2 3 28 28 H 1.07998 * 120.00146 * 173.98898 * 3 2 1 29 29 H 1.09001 * 109.47351 * 89.99663 * 7 6 4 30 30 H 1.09005 * 109.47328 * 330.00074 * 7 6 4 31 31 H 1.09001 * 109.47436 * 210.00010 * 7 6 4 32 32 H 1.09001 * 109.47051 * 35.33446 * 8 6 4 33 33 H 1.09006 * 109.47442 * 155.33035 * 8 6 4 34 34 H 1.08992 * 113.73966 * 336.43937 * 11 9 8 35 35 H 1.08996 * 113.73613 * 107.63861 * 11 9 8 36 36 H 1.09001 * 113.76657 * 137.91143 * 12 11 9 37 37 H 1.09003 * 113.77076 * 269.19376 * 12 11 9 38 38 H 0.96999 * 119.99915 * 180.02562 * 17 16 14 39 39 H 1.09001 * 115.55124 * 160.42974 * 22 2 1 40 40 H 1.08995 * 117.50054 * 0.02562 * 23 22 2 41 41 H 1.09007 * 117.49843 * 145.02261 * 23 22 2 42 42 H 1.08996 * 117.50439 * 252.50683 * 24 23 22 43 43 H 1.09005 * 117.49523 * 107.48454 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4426 2.4222 -0.1334 5 8 0.2265 2.4261 -0.1522 6 7 2.1218 3.5818 -0.2348 7 6 3.5806 3.5903 -0.1011 8 6 1.4014 4.8338 -0.4789 9 6 1.1655 5.0020 -1.9812 10 1 0.4781 4.2611 -2.3893 11 6 2.4601 5.1640 -2.7983 12 6 1.7115 6.2588 -3.5798 13 7 0.8537 6.3875 -2.3829 14 6 0.0812 7.3884 -1.8571 15 1 -0.3954 7.2550 -0.8972 16 6 -0.0892 8.5745 -2.5578 17 7 0.4920 8.7373 -3.7274 18 14 -1.1424 9.9403 -1.8402 19 1 -0.2942 10.8385 -1.0161 20 1 -1.7624 10.7185 -2.9425 21 1 -2.2080 9.3494 -0.9912 22 6 2.2605 -1.3051 -0.0006 23 6 1.4770 -2.5730 -0.3460 24 6 1.9213 -2.3172 1.0955 25 1 -0.3633 0.4313 -0.9328 26 1 -0.3633 -1.0235 0.0928 27 1 -0.3633 0.5921 0.8399 28 1 3.2476 1.1543 0.0979 29 1 4.0362 3.4488 -1.0812 30 1 3.8894 2.7829 0.5629 31 1 3.9019 4.5454 0.3145 32 1 0.4425 4.8081 0.0388 33 1 1.9922 5.6713 -0.1078 34 1 3.3024 5.5381 -2.2164 35 1 2.7128 4.2895 -3.3978 36 1 2.3156 7.1424 -3.7858 37 1 1.1853 5.8887 -4.4597 38 1 0.3732 9.5663 -4.2168 39 1 3.2981 -1.2488 -0.3300 40 1 0.4167 -2.4632 -0.5733 41 1 1.9990 -3.3512 -0.9030 42 1 2.7355 -2.9270 1.4870 43 1 1.1531 -2.0391 1.8170 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230947451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:44 Heat of formation + Delta-G solvation = 47.704227 kcal Electronic energy + Delta-G solvation = -21775.786376 eV Core-core repulsion = 18630.643828 eV Total energy + Delta-G solvation = -3145.142548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.14892 -39.67754 -38.73355 -36.43105 -34.28665 -34.09043 -30.43090 -29.86218 -28.62716 -27.18487 -25.40106 -25.14205 -23.55385 -23.18042 -21.06139 -20.43170 -19.09502 -18.69873 -18.02869 -17.29166 -16.96726 -16.52320 -16.26720 -15.88978 -15.39524 -15.36754 -14.58657 -14.33648 -14.12106 -13.88814 -13.73410 -13.58141 -13.39762 -13.32456 -12.95721 -12.76382 -12.61042 -12.43438 -12.33171 -12.26185 -12.05933 -11.86024 -11.83154 -11.57632 -11.31640 -11.29107 -10.87206 -10.52427 -9.94130 -9.47488 -8.90617 -7.92322 -5.25207 0.37548 1.42714 1.45308 1.53824 2.03920 2.33290 2.48571 3.06325 3.28329 3.40562 3.54564 3.85044 3.88859 3.98994 4.03621 4.15183 4.22265 4.28544 4.31375 4.43776 4.53779 4.66055 4.69184 4.78029 4.83338 4.85515 4.91831 4.95457 5.00893 5.03145 5.05526 5.14045 5.17152 5.21740 5.28915 5.47672 5.54258 5.55168 5.62012 5.71941 5.93029 6.55822 6.91477 7.28648 7.59559 8.56642 9.25468 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032644 B = 0.003479 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.544628 B = 8046.241928 C = 8305.977289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.000 4.000 3 C -0.232 4.232 4 C 0.531 3.469 5 O -0.587 6.587 6 N -0.605 5.605 7 C 0.073 3.927 8 C 0.137 3.863 9 C 0.130 3.870 10 H 0.021 0.979 11 C -0.119 4.119 12 C 0.157 3.843 13 N -0.629 5.629 14 C -0.233 4.233 15 H 0.078 0.922 16 C -0.066 4.066 17 N -0.954 5.954 18 Si 0.977 3.023 19 H -0.280 1.280 20 H -0.294 1.294 21 H -0.274 1.274 22 C -0.141 4.141 23 C -0.172 4.172 24 C -0.158 4.158 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.160 0.840 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.009 0.991 38 H 0.249 0.751 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.378 -22.210 9.269 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.002 4.002 3 C -0.252 4.252 4 C 0.324 3.676 5 O -0.470 6.470 6 N -0.337 5.337 7 C -0.068 4.068 8 C 0.012 3.988 9 C 0.023 3.977 10 H 0.038 0.962 11 C -0.157 4.157 12 C 0.031 3.969 13 N -0.356 5.356 14 C -0.361 4.361 15 H 0.096 0.904 16 C -0.259 4.259 17 N -0.602 5.602 18 Si 0.805 3.195 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.199 1.199 22 C -0.159 4.159 23 C -0.209 4.209 24 C -0.195 4.195 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.178 0.822 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.058 0.942 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.628 -21.872 9.280 25.636 hybrid contribution -1.156 1.398 -0.218 1.827 sum 8.472 -20.474 9.062 23.939 Atomic orbital electron populations 1.20974 0.92193 1.01605 1.02404 1.22022 0.95503 0.93791 0.88923 1.22440 1.01520 0.89957 1.11310 1.19230 0.86956 0.85351 0.76075 1.90763 1.15904 1.87622 1.52687 1.47728 1.09107 1.06128 1.70718 1.22138 0.77087 1.04481 1.03135 1.21274 0.96609 0.85637 0.95265 1.22569 0.94405 0.86101 0.94632 0.96182 1.23483 0.96085 0.98077 0.98096 1.22121 0.90175 0.95454 0.89100 1.46520 1.54913 1.08306 1.25845 1.19370 1.22567 0.93037 1.01151 0.90411 1.25626 1.02364 1.00777 0.97117 1.70012 1.48770 1.26318 1.15149 0.85109 0.78492 0.78979 0.76947 1.20637 1.22001 1.19899 1.21334 1.00267 0.87076 1.07209 1.23187 1.01018 0.97755 0.98914 1.23072 1.04130 1.00592 0.91722 0.92349 0.90637 0.91998 0.82213 0.91198 0.88441 0.90311 0.93735 0.89630 0.88796 0.90412 0.93881 0.97344 0.94214 0.84869 0.88576 0.86554 0.86274 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.02 71.24 0.57 -2.28 16 2 C 0.00 -0.01 5.82 -17.61 -0.10 -0.11 16 3 C -0.23 -5.17 8.85 23.43 0.21 -4.96 16 4 C 0.53 16.84 7.54 86.57 0.65 17.49 16 5 O -0.59 -23.73 12.74 -4.08 -0.05 -23.78 16 6 N -0.61 -17.92 2.77 -851.06 -2.36 -20.28 16 7 C 0.07 1.37 9.69 127.77 1.24 2.61 16 8 C 0.14 5.23 5.36 86.38 0.46 5.69 16 9 C 0.13 5.73 4.54 45.09 0.20 5.93 16 10 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 11 C -0.12 -4.49 7.35 31.25 0.23 -4.26 16 12 C 0.16 7.82 7.40 86.43 0.64 8.46 16 13 N -0.63 -34.00 3.58 -690.84 -2.47 -36.47 16 14 C -0.23 -13.69 10.51 84.03 0.88 -12.81 16 15 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 16 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 17 N -0.95 -59.41 11.55 21.65 0.25 -59.16 16 18 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 22 C -0.14 -1.92 6.01 -11.54 -0.07 -1.99 16 23 C -0.17 -1.97 9.78 30.59 0.30 -1.67 16 24 C -0.16 -1.70 10.07 30.59 0.31 -1.40 16 25 H 0.06 1.76 7.33 -2.38 -0.02 1.74 16 26 H 0.07 1.43 5.73 -2.39 -0.01 1.41 16 27 H 0.06 1.79 7.13 -2.39 -0.02 1.78 16 28 H 0.16 2.37 6.30 -2.91 -0.02 2.35 16 29 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 30 H 0.10 1.25 6.26 -2.38 -0.01 1.23 16 31 H 0.08 1.39 7.86 -2.39 -0.02 1.37 16 32 H 0.04 1.94 7.52 -2.39 -0.02 1.93 16 33 H 0.09 3.18 7.83 -2.38 -0.02 3.16 16 34 H 0.09 3.14 8.05 -2.39 -0.02 3.12 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.04 2.32 7.43 -2.39 -0.02 2.31 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 38 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.10 1.23 6.26 -2.39 -0.01 1.22 16 41 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -75.92 346.90 4.37 -71.55 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.98 Total: 11.37 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.99 Total: 7.26 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -4.58 Total: -115.91 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -75.92 4.37 -71.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230947451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.252 kcal (2) G-P(sol) polarization free energy of solvation -75.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds